Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_008293.1
Length=135454
Score E
Sequences producing significant alignments: (Bits) Value
seq49 147 2e-30
seq652 120 3e-22
seq203 96.9 3e-15
seq91 96.9 3e-15
seq116 87.8 2e-12
>seq49
Length=4798478
Score = 147 bits (162), Expect = 2e-30
Identities = 173/232 (75%), Gaps = 8/232 (3%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| | || || ||| | ||||| | ||||| ||| ||
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113
|||||| ||||| |||| |||| |||| ||| ||||| ||||| ||||| || |
Sbjct 2840917 TGACACCATCGACAACGTCA---AAGCGAAAATTCAG-GACAAGGAAGGCATTCCCCCGG 2840972
Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173
| || ||| || ||||||||||||| ||||| ||||||||| | | ||| ||| ||||
Sbjct 2840973 ATCAGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATT 2841032
Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|||| || || ||||| ||||| || || || || || | || || |||||
Sbjct 2841033 ACAACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTGCGCCTGAGGGGAGG 2841084
Score = 147 bits (162), Expect = 2e-30
Identities = 173/231 (75%), Gaps = 6/231 (3%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
||||||||| ||||| ||||| | || || ||| | ||||| | ||||| ||| ||
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
|||||||||||| || || ||||||||| ||| ||||||||||| ||||| || ||
Sbjct 2869973 TGACACTATCGA--CAATGTCAAAGCAAAAATTCA-GGACAAAGAAGGCATTCCCCCGGA 2870029
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
|| ||| || |||||||||| || ||||| ||||||||| | | ||| ||| |||||
Sbjct 2870030 TCAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTA 2870089
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || ||||| || || || || || || || | || || |||||
Sbjct 2870090 TAACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 2870140
Score = 125 bits (138), Expect = 6e-24
Identities = 165/229 (72%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| | ||||| || |||| || | || |||||| ||
Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || || ||||| |||||| ||||||||||||||||| || |||||
Sbjct 2869746 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACCAG 2869805
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|||||| | |||||||| || || ||| | || |||| || || | | || |||||
Sbjct 2869806 CAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACAAC 2869865
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| ||||| |||||||| || || || || || | | ||||||||||
Sbjct 2869866 ATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTTTGAGAGGAGGAA 2869914
Score = 122 bits (134), Expect = 8e-23
Identities = 158/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| |||||| |||| || || | ||||| | ||||| ||| ||
Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145
Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114
||||| || || |||| |||| || | || ||||| ||||| ||||| || ||
Sbjct 2841146 GACACGATTGATAATGTCA---AAGCGAAGATACAG-GACAAGGAAGGCATTCCCCCAGA 2841201
Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174
||| |||||| | |||||||| || ||||| | || |||| || || ||| ||||||
Sbjct 2841202 CCAGCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTA 2841261
Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|||||||||||| || || ||||| ||| | || ||
Sbjct 2841262 CAATATTCAAAAGGAGTCGACGCTCCATCTTGTCCT 2841297
Score = 98.7 bits (108), Expect = 9e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| | || || || | || || | || || ||| ||
Sbjct 2840630 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACAATTACTCTGGAGGTCGAGAGTTCC 2840689
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
|| || || || ||||| |||||| |||||||||||||| || || |||||
Sbjct 2840690 GATACCATTGACAATGTGAAGGCTAAAATCCAGGACAAAGAAGGGATCCCCCCAGACCAG 2840749
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|||||| | || ||||| ||||| || | || |||| | || | | || |||||
Sbjct 2840750 CAGCGGTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACGCTTGCAGACTACAAC 2840809
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|| ||||| |||||||| || || || || || | || ||||||||||
Sbjct 2840810 ATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTCTCAGAGGAGGAA 2840858
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| ||||||| || | ||||| | ||||||||| ||
Sbjct 2841314 ATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACTATCACTTTGGAAGTGGAGAGTTCA 2841373
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| || || || || || |||||||||||
Sbjct 2841374 GACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 2841433
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||| || || | ||||| | | ||| ||| || || ||
Sbjct 2841434 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAAGACGGGAGGACTTTGGCTGACTATAAC 2841493
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| || || ||||| || || ||
Sbjct 2841494 ATCCAGAAAGAGTCGACTCTACACTTGGTCCT 2841525
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || ||||| ||||| |||| || || ||||||| | ||||||||| ||
Sbjct 2847302 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTTTGGAAGTGGAGAGTTCA 2847361
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| || || ||||| || ||| || || || || || |||||||||||
Sbjct 2847362 GACACCATTGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 2847421
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||| || | || |||||||| || || | ||||| | | ||| ||| || || ||
Sbjct 2847422 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAAGACGGGAGGACTTTGGCTGACTATAAC 2847481
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| || || ||||| || || ||
Sbjct 2847482 ATCCAGAAAGAGTCGACTCTACACTTGGTCCT 2847513
Score = 82.4 bits (90), Expect = 7e-11
Identities = 110/153 (72%), Gaps = 0/153 (0%)
Strand=Plus/Plus
Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134
||||| |||||| |||||||||||||| || || ||||| |||||| | || ||||
Sbjct 2846694 TGAAGGCTAAAATCCAGGACAAAGAAGGGATCCCCCCAGACCAGCAGCGGTTGATCTTTG 2846753
Query 25135 CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCA 25194
| | ||| || | || |||| | || | | || ||||| || ||||| ||||| |
Sbjct 2846754 CTGCCAAGCAGCTCGAGGATGGCAGGACGCTCGCGGACTACAACATCCAAAAGGAATCTA 2846813
Query 25195 CGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
| || || || || || | || ||||||||||
Sbjct 2846814 CCCTTCACTTGGTCCTCCGTCTCAGAGGAGGAA 2846846
>seq652
Length=2384379
Score = 120 bits (132), Expect = 3e-22
Identities = 166/230 (72%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | || || || |||| || |||| || || ||
Sbjct 464830 ATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATAACCCTCGAGGTCGAAAGTTCG 464889
Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||||||||| | || ||||| |||||| ||||| || || || || || |||||
Sbjct 464890 GACACTATCGA-TAACGTGAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCCAGACCA 464948
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | |||||||| ||||| ||| | || |||| | || | | || |||||
Sbjct 464949 GCAGAGGTTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACGCTCGCAGACTACAA 465008
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227
|||||||| |||||||| || || || ||||| | || || |||||||
Sbjct 465009 CATTCAAAAGGAATCCACCCTTCACTTGGTGCTCCGTCTGAGGGGAGGAA 465058
Score = 114 bits (126), Expect = 1e-20
Identities = 153/213 (72%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057
|||||| || ||||| |||||| ||||||| || ||||||| | || |||||| ||
Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572
Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117
||||| ||||| ||||| ||| ||| ||||| || || || || || |||||
Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 465632
Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177
||| || | ||||||||||| || ||| | ||||| | | || ||| |||||| ||
Sbjct 465633 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATAA 465692
Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
|| || ||||| || || || || || || ||
Sbjct 465693 CATCCAGAAAGAGTCAACTCTGCACTTGGTCCT 465725
>seq203
Length=8626763
Score = 96.9 bits (106), Expect = 3e-15
Identities = 151/214 (71%), Gaps = 4/214 (2%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
|||||||| ||||| ||||| | || || || | || || | ||||| ||| |||
Sbjct 5730158 ATGCAAATCTTTGTGAAGACCCTCACTGGGAAGACAATTACCCTAGAAGTTGAGAGCTCT 5730217
Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116
||||| || || || || ||| || ||| ||||| || || |||||||| ||||
Sbjct 5730218 GACACCATTGA--CAATGTCAAGGCTAAGATCCAAGACAAGGAGGGTATTCCACCGGACC 5730275
Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176
| ||| || | |||||||| || || || | ||||||| | || | | || ||||
Sbjct 5730276 AGCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAAGATGGCAGGACGCTTGCGGACTACA 5730335
Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210
| || || ||||||||||| || || || |||||
Sbjct 5730336 ACATCCAGAAAGAATCCACACTCCACTTGGTGCT 5730369
>seq91
Length=4251426
Score = 96.9 bits (106), Expect = 3e-15
Identities = 103/136 (76%), Gaps = 0/136 (0%)
Strand=Plus/Minus
Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151
||||| ||||| ||||| || ||||||||||| | |||||||| || || ||||| |||
Sbjct 285908 GACAAGGAAGGTATTCCTCCGGACCAACAGCGATTGATTTTTGCTGGTAAGCAATTGGAA 285849
Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211
|||| || ||| | | || || || || ||||| || || || || ||| | ||| |
Sbjct 285848 GATGGACGAACTCTTGCAGACTATAACATCCAAAAGGAGTCGACTCTTCATCTGGTGTTG 285789
Query 25212 AGGCTAAGAGGAGGAA 25227
||||| || |||||||
Sbjct 285788 AGGCTCAGGGGAGGAA 285773
>seq116
Length=10441785
Score = 87.8 bits (96), Expect = 2e-12
Identities = 141/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || | ||||| | || |||||| ||
Sbjct 4711842 ATGCAGATCTTCGTGAAGACCCTGACCGGGAAGACGATCACGCTGGAGGTGGAGAGCTCG 4711783
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| ||||| || || ||||| || ||||| || || || ||
Sbjct 4711782 GACACGATCGACAATGTGAAGGCGAAGATACAGGACAAGGAGGGGATCCCGCCGGATCAG 4711723
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
|||||| | || || ||||| || || | || || | |||||| | | ||||||||||
Sbjct 4711722 CAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGTCGCACCCTCGCCGATTACAAT 4711663
Query 25179 ATTCAAAAAGAATCCACGCTACA 25201
|| || || || || || || ||
Sbjct 4711662 ATCCAGAAGGAGTCTACCCTGCA 4711640
Score = 86.0 bits (94), Expect = 5e-12
Identities = 155/227 (68%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058
||||| || || || ||||| ||||||| || ||||||| |||| || ||| ||
Sbjct 4726289 ATGCAGATCTTCGTCAAGACCCTGACCGGGAAGACCATCACGCTCGAGGTCGAGAGCTCC 4726348
Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118
||||| ||||| | ||| |||||| ||||| || || || || || || ||
Sbjct 4726349 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCGGATCAG 4726408
Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178
||||| | || || || || || || | || || | | | || | | ||||||||||
Sbjct 4726409 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGTAGGACCCTCGCCGATTACAAT 4726468
Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225
|| || || || || ||||| || | || || ||||| | |||||
Sbjct 4726469 ATCCAGAAGGAGTCGACGCTCCACCTCGTTCTGAGGCTCCGTGGAGG 4726515
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 433135891614440
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