Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq49 147 2e-30 seq652 120 3e-22 seq203 96.9 3e-15 seq91 96.9 3e-15 seq116 87.8 2e-12 >seq49 Length=4798478 Score = 147 bits (162), Expect = 2e-30 Identities = 173/232 (75%), Gaps = 8/232 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || || ||| | ||||| | ||||| ||| || Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916 Query 25058 TGACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 |||||| ||||| |||| |||| |||| ||| ||||| ||||| ||||| || | Sbjct 2840917 TGACACCATCGACAACGTCA---AAGCGAAAATTCAG-GACAAGGAAGGCATTCCCCCGG 2840972 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 | || ||| || ||||||||||||| ||||| ||||||||| | | ||| ||| |||| Sbjct 2840973 ATCAGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATT 2841032 Query 25174 ACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 |||| || || ||||| ||||| || || || || || | || || ||||| Sbjct 2841033 ACAACATCCAGAAAGAGTCCACTCTTCACTTGGTTCTGCGCCTGAGGGGAGG 2841084 Score = 147 bits (162), Expect = 2e-30 Identities = 173/231 (75%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 ||||||||| ||||| ||||| | || || ||| | ||||| | ||||| ||| || Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 25058 TGACACTATCGAGTCACTG---AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 |||||||||||| || || ||||||||| ||| ||||||||||| ||||| || || Sbjct 2869973 TGACACTATCGA--CAATGTCAAAGCAAAAATTCA-GGACAAAGAAGGCATTCCCCCGGA 2870029 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 || ||| || |||||||||| || ||||| ||||||||| | | ||| ||| ||||| Sbjct 2870030 TCAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTA 2870089 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || ||||| || || || || || || || | || || ||||| Sbjct 2870090 TAACATCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 2870140 Score = 125 bits (138), Expect = 6e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| | ||||| || |||| || | || |||||| || Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| |||||| ||||||||||||||||| || ||||| Sbjct 2869746 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACCAG 2869805 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | |||||||| || || ||| | || |||| || || | | || ||||| Sbjct 2869806 CAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACAAC 2869865 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| |||||||| || || || || || | | |||||||||| Sbjct 2869866 ATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTTTGAGAGGAGGAA 2869914 Score = 122 bits (134), Expect = 8e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| |||||| |||| || || | ||||| | ||||| ||| || Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145 Query 25059 GACACTATCGA----GTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGA 25114 ||||| || || |||| |||| || | || ||||| ||||| ||||| || || Sbjct 2841146 GACACGATTGATAATGTCA---AAGCGAAGATACAG-GACAAGGAAGGCATTCCCCCAGA 2841201 Query 25115 CCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTA 25174 ||| |||||| | |||||||| || ||||| | || |||| || || ||| |||||| Sbjct 2841202 CCAGCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTA 2841261 Query 25175 CAATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 |||||||||||| || || ||||| ||| | || || Sbjct 2841262 CAATATTCAAAAGGAGTCGACGCTCCATCTTGTCCT 2841297 Score = 98.7 bits (108), Expect = 9e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| | || || || | || || | || || ||| || Sbjct 2840630 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACAATTACTCTGGAGGTCGAGAGTTCC 2840689 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 || || || || ||||| |||||| |||||||||||||| || || ||||| Sbjct 2840690 GATACCATTGACAATGTGAAGGCTAAAATCCAGGACAAAGAAGGGATCCCCCCAGACCAG 2840749 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || ||||| ||||| || | || |||| | || | | || ||||| Sbjct 2840750 CAGCGGTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACGCTTGCAGACTACAAC 2840809 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || ||||| |||||||| || || || || || | || |||||||||| Sbjct 2840810 ATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTCTCAGAGGAGGAA 2840858 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| ||||||| || | ||||| | ||||||||| || Sbjct 2841314 ATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACTATCACTTTGGAAGTGGAGAGTTCA 2841373 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| || || || || || ||||||||||| Sbjct 2841374 GACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 2841433 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||| | | ||| ||| || || || Sbjct 2841434 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAAGACGGGAGGACTTTGGCTGACTATAAC 2841493 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || ||||| || || || Sbjct 2841494 ATCCAGAAAGAGTCGACTCTACACTTGGTCCT 2841525 Score = 95.1 bits (104), Expect = 1e-14 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || ||||| ||||| |||| || || ||||||| | ||||||||| || Sbjct 2847302 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTTTGGAAGTGGAGAGTTCA 2847361 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || || ||||| || ||| || || || || || ||||||||||| Sbjct 2847362 GACACCATTGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 2847421 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||| || | || |||||||| || || | ||||| | | ||| ||| || || || Sbjct 2847422 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAAGACGGGAGGACTTTGGCTGACTATAAC 2847481 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || ||||| || || || Sbjct 2847482 ATCCAGAAAGAGTCGACTCTACACTTGGTCCT 2847513 Score = 82.4 bits (90), Expect = 7e-11 Identities = 110/153 (72%), Gaps = 0/153 (0%) Strand=Plus/Plus Query 25075 TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTG 25134 ||||| |||||| |||||||||||||| || || ||||| |||||| | || |||| Sbjct 2846694 TGAAGGCTAAAATCCAGGACAAAGAAGGGATCCCCCCAGACCAGCAGCGGTTGATCTTTG 2846753 Query 25135 CCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCA 25194 | | ||| || | || |||| | || | | || ||||| || ||||| ||||| | Sbjct 2846754 CTGCCAAGCAGCTCGAGGATGGCAGGACGCTCGCGGACTACAACATCCAAAAGGAATCTA 2846813 Query 25195 CGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 | || || || || || | || |||||||||| Sbjct 2846814 CCCTTCACTTGGTCCTCCGTCTCAGAGGAGGAA 2846846 >seq652 Length=2384379 Score = 120 bits (132), Expect = 3e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || |||| || |||| || || || Sbjct 464830 ATGCAAATCTTTGTGAAGACCCTCACTGGCAAGACCATAACCCTCGAGGTCGAAAGTTCG 464889 Query 25059 GACACTATCGAGTCAC-TGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||||||||| | || ||||| |||||| ||||| || || || || || ||||| Sbjct 464890 GACACTATCGA-TAACGTGAAGGCGAAAATCCAGGACAAGGAGGGAATCCCCCCAGACCA 464948 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | |||||||| ||||| ||| | || |||| | || | | || ||||| Sbjct 464949 GCAGAGGTTGATTTTTGCTGGCAAGCAACTCGAGGATGGCAGGACGCTCGCAGACTACAA 465008 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 |||||||| |||||||| || || || ||||| | || || ||||||| Sbjct 465009 CATTCAAAAGGAATCCACCCTTCACTTGGTGCTCCGTCTGAGGGGAGGAA 465058 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| |||||| ||||||| || ||||||| | || |||||| || Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572 Query 25058 TGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 ||||| ||||| ||||| ||| ||| ||||| || || || || || ||||| Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 465632 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 ||| || | ||||||||||| || ||| | ||||| | | || ||| |||||| || Sbjct 465633 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATAA 465692 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 || || ||||| || || || || || || || Sbjct 465693 CATCCAGAAAGAGTCAACTCTGCACTTGGTCCT 465725 >seq203 Length=8626763 Score = 96.9 bits (106), Expect = 3e-15 Identities = 151/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 |||||||| ||||| ||||| | || || || | || || | ||||| ||| ||| Sbjct 5730158 ATGCAAATCTTTGTGAAGACCCTCACTGGGAAGACAATTACCCTAGAAGTTGAGAGCTCT 5730217 Query 25059 GACACTATCGAGTCACTG--AAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||||| || || || || ||| || ||| ||||| || || |||||||| |||| Sbjct 5730218 GACACCATTGA--CAATGTCAAGGCTAAGATCCAAGACAAGGAGGGTATTCCACCGGACC 5730275 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | |||||||| || || || | ||||||| | || | | || |||| Sbjct 5730276 AGCAGAGGCTCATTTTTGCAGGAAAGCAGCTTGAAGATGGCAGGACGCTTGCGGACTACA 5730335 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || ||||||||||| || || || ||||| Sbjct 5730336 ACATCCAGAAAGAATCCACACTCCACTTGGTGCT 5730369 >seq91 Length=4251426 Score = 96.9 bits (106), Expect = 3e-15 Identities = 103/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 25092 GACAAAGAAGGGATTCCACCTGACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAA 25151 ||||| ||||| ||||| || ||||||||||| | |||||||| || || ||||| ||| Sbjct 285908 GACAAGGAAGGTATTCCTCCGGACCAACAGCGATTGATTTTTGCTGGTAAGCAATTGGAA 285849 Query 25152 GATGATCGCACTGTGGGCGATTACAATATTCAAAAAGAATCCACGCTACATTTAGTGCTA 25211 |||| || ||| | | || || || || ||||| || || || || ||| | ||| | Sbjct 285848 GATGGACGAACTCTTGCAGACTATAACATCCAAAAGGAGTCGACTCTTCATCTGGTGTTG 285789 Query 25212 AGGCTAAGAGGAGGAA 25227 ||||| || ||||||| Sbjct 285788 AGGCTCAGGGGAGGAA 285773 >seq116 Length=10441785 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || | ||||| | || |||||| || Sbjct 4711842 ATGCAGATCTTCGTGAAGACCCTGACCGGGAAGACGATCACGCTGGAGGTGGAGAGCTCG 4711783 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| ||||| || || ||||| || ||||| || || || || Sbjct 4711782 GACACGATCGACAATGTGAAGGCGAAGATACAGGACAAGGAGGGGATCCCGCCGGATCAG 4711723 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 |||||| | || || ||||| || || | || || | |||||| | | |||||||||| Sbjct 4711722 CAGCGGCTCATCTTCGCCGGGAAGCAGCTGGAGGACGGTCGCACCCTCGCCGATTACAAT 4711663 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 4711662 ATCCAGAAGGAGTCTACCCTGCA 4711640 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| ||||||| || ||||||| |||| || ||| || Sbjct 4726289 ATGCAGATCTTCGTCAAGACCCTGACCGGGAAGACCATCACGCTCGAGGTCGAGAGCTCC 4726348 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| ||||| | ||| |||||| ||||| || || || || || || || Sbjct 4726349 GACACGATCGACAACGTCAAGGCCAAAATCCAGGACAAGGAGGGCATCCCGCCGGATCAG 4726408 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || || || || || | || || | | | || | | |||||||||| Sbjct 4726409 CAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAGGACGGTAGGACCCTCGCCGATTACAAT 4726468 Query 25179 ATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 || || || || || ||||| || | || || ||||| | ||||| Sbjct 4726469 ATCCAGAAGGAGTCGACGCTCCACCTCGTTCTGAGGCTCCGTGGAGG 4726515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433135891614440