Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_008518.1
Length=174059
Score E
Sequences producing significant alignments: (Bits) Value
seq49 93.3 5e-14
seq80 91.5 2e-13
seq109 89.7 6e-13
seq87 87.8 2e-12
seq85 87.8 2e-12
seq31095 86.0 7e-12
seq86 86.0 7e-12
seq22 84.2 2e-11
seq5792 82.4 8e-11
seq3 82.4 8e-11
>seq49
Length=4798478
Score = 93.3 bits (102), Expect = 5e-14
Identities = 77/93 (83%), Gaps = 6/93 (6%)
Strand=Plus/Minus
Query 126263 ACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GG 126318
||||||||| ||||||||||||||||||||||||| | ||| |||||| |||| |
Sbjct 4131850 ACAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGA 4131793
Query 126319 GAGCGTGGGTTCGAACCCCACACCTGACAAATT 126351
| |||||||||| || ||||| ||||||||||
Sbjct 4131792 GGGCGTGGGTTCAAATCCCACTTCTGACAAATT 4131760
>seq80
Length=1461076
Score = 91.5 bits (100), Expect = 2e-13
Identities = 75/90 (83%), Gaps = 6/90 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 365072 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 365129
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351
||||||||| || ||||| ||||||||||
Sbjct 365130 CGTGGGTTCAAATCCCACTTCTGACAAATT 365159
>seq109
Length=8785251
Score = 89.7 bits (98), Expect = 6e-13
Identities = 79/96 (82%), Gaps = 7/96 (7%)
Strand=Plus/Plus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| | ||| || |
Sbjct 1419967 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CTTCGAGAGAGGG 1420024
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATTATTATT 126357
||||||||| || ||||| ||||| ||||||||||
Sbjct 1420025 CGTGGGTTCAAATCCCACTTCTGAC-AATTATTATT 1420059
Score = 82.4 bits (90), Expect = 8e-11
Identities = 79/99 (80%), Gaps = 3/99 (3%)
Strand=Plus/Minus
Query 126253 GCTTCTATTTACAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTC 126312
||||| ||| | | ||| |||||||||||||||||||||||||||||| | ||||||
Sbjct 2000303 GCTTC-ATTAAATGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT-- 2000247
Query 126313 CCTCGGGAGCGTGGGTTCGAACCCCACACCTGACAAATT 126351
|| | |||||||||| || |||||| ||| ||| ||
Sbjct 2000246 CCGAAAGGGCGTGGGTTCAAATCCCACAGCTGTCAACTT 2000208
>seq87
Length=12262769
Score = 87.8 bits (96), Expect = 2e-12
Identities = 73/88 (83%), Gaps = 6/88 (7%)
Strand=Plus/Minus
Query 126264 CAGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA--- 126320
|||||||| ||||||||||||||||||||||||| | ||| |||||| ||||| ||
Sbjct 9354499 CAGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAGAGAG 9354442
Query 126321 -GCGTGGGTTCGAACCCCACACCTGACA 126347
|||||||||| || ||||| ||||||
Sbjct 9354441 GGCGTGGGTTCAAATCCCACTTCTGACA 9354414
>seq85
Length=5226098
Score = 87.8 bits (96), Expect = 2e-12
Identities = 74/90 (82%), Gaps = 6/90 (7%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 267768 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 267711
Query 126322 CGTGGGTTCGAACCCCACACCTGACAAATT 126351
||||||||| || ||||| ||||||| ||
Sbjct 267710 CGTGGGTTCAAATCCCACTTCTGACAATTT 267681
>seq31095
Length=6821297
Score = 86.0 bits (94), Expect = 7e-12
Identities = 72/87 (83%), Gaps = 6/87 (7%)
Strand=Plus/Minus
Query 126266 GTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGA----G 126321
|||||| ||||||||||||||||||||||||| | ||| |||||| ||||| || |
Sbjct 3898310 GTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGTGAGAGGG 3898253
Query 126322 CGTGGGTTCGAACCCCACACCTGACAA 126348
||||||||| || ||||| |||||||
Sbjct 3898252 CGTGGGTTCAAATCCCACTTCTGACAA 3898226
>seq86
Length=7715951
Score = 86.0 bits (94), Expect = 7e-12
Identities = 76/94 (81%), Gaps = 6/94 (6%)
Strand=Plus/Plus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTC----GGGA 126320
||||||| ||||||||||||||||||||||||| | ||| |||||| |||| | |
Sbjct 1310661 AGTCAGGATGGCCGAGTGGTCTAAGGCGCCAGACTCAAGTTCTGGT--CCTCGAAAGAGG 1310718
Query 126321 GCGTGGGTTCGAACCCCACACCTGACAAATTATT 126354
|||||||||| || ||||| ||||||| || ||
Sbjct 1310719 GCGTGGGTTCAAATCCCACTTCTGACAAGTTTTT 1310752
>seq22
Length=3960921
Score = 84.2 bits (92), Expect = 2e-11
Identities = 69/83 (83%), Gaps = 2/83 (2%)
Strand=Plus/Plus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 267397 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 267454
Query 126328 TTCGAACCCCACACCTGACAAAT 126350
||| || |||||| ||| |||||
Sbjct 267455 TTCAAATCCCACAGCTGTCAAAT 267477
>seq5792
Length=708936
Score = 82.4 bits (90), Expect = 8e-11
Identities = 69/84 (82%), Gaps = 2/84 (2%)
Strand=Plus/Minus
Query 126268 CAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGTGGG 126327
||| |||||||||||||||||||||||||||||| | |||||| || | |||||||
Sbjct 353281 CAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGTGGG 353224
Query 126328 TTCGAACCCCACACCTGACAAATT 126351
||| || |||||| ||| ||| ||
Sbjct 353223 TTCAAATCCCACAGCTGTCAACTT 353200
>seq3
Length=5051733
Score = 82.4 bits (90), Expect = 8e-11
Identities = 71/87 (82%), Gaps = 2/87 (2%)
Strand=Plus/Minus
Query 126265 AGTCAGGTTGGCCGAGTGGTCTAAGGCGCCAGATTTAAGATCTGGTTCCCTCGGGAGCGT 126324
|| ||| |||||||||||||||||||||||||||||| | |||||| || | ||||
Sbjct 3618082 AGACAGTTTGGCCGAGTGGTCTAAGGCGCCAGATTTAGGCTCTGGT--CCGAAAGGGCGT 3618025
Query 126325 GGGTTCGAACCCCACACCTGACAAATT 126351
|||||| || |||||| ||| ||| ||
Sbjct 3618024 GGGTTCAAATCCCACAGCTGTCAACTT 3617998
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 556607595394240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |