Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_008603.1
Length=321240
Score E
Sequences producing significant alignments: (Bits) Value
seq161 165 2e-35
seq652 134 3e-26
seq130 93.3 9e-14
seq606 87.8 4e-12
seq116 87.8 4e-12
seq87 87.8 4e-12
seq86 87.8 4e-12
seq77 87.8 4e-12
seq49 87.8 4e-12
seq24 87.8 4e-12
seq85 86.0 1e-11
>seq161
Length=5110746
Score = 165 bits (182), Expect = 2e-35
Identities = 553/852 (65%), Gaps = 23/852 (3%)
Strand=Plus/Minus
Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622
|||||||| || | ||| |||| ||| ||||| |||||||| ||||||||||||| | |
Sbjct 1384665 TCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTTCGGG 1384606
Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682
| ||||| ||| | | | || || ||| || ||||| || || ||||| |
Sbjct 1384605 ACGCTGTACATCTTCCCGTAGTCGAGGGCGCCGAGGAGACGGTCGGCGACGAACTCGATG 1384546
Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742
||||| ||||| || || |||||| || | || || || | || || |||| |
Sbjct 1384545 TACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGCACGGGAGCGCGTCGCAGACG 1384486
Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802
|| ||| | ||| || | || ||||| ||| || || |||| | || | ||
Sbjct 1384485 AACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCCGCACCCGCTCCTCGCTCGGC 1384426
Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862
|| ||| |||| ||||| || || | | || | ||| || |||||||| ||
Sbjct 1384425 TTCCTCTTCAGCAGCGAGTAGAGCAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCCCGG 1384366
Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922
||||| |||||| || | || || ||||| | || || ||| |||||||||||
Sbjct 1384365 GAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAG 1384306
Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982
|| ||||| || || ||||| | | |||||||| || | | || | ||||||
Sbjct 1384305 ATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGAGGAGGCGC 1384246
Query 251983 TCAGCAAACGACTTG--TCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAA 252040
|| || || |||| | || |||| | | ||||| | ||||| | |
Sbjct 1384245 TCGGCGAAGGACTCGGCGCCGTCGAC--CCAGCGGAGGGCCCAGTCCGCCTTGCGAGCGA 1384188
Query 252041 CCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGA 252100
| ||||||| || |||| || ||||| || | |||||| ||||| || |
Sbjct 1384187 CGGCGGGGACGGTGTCGACCGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGT 1384128
Query 252101 GCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAG 252160
| || || ||||| ||||||||| || |||||| ||| || |||||| |
Sbjct 1384127 AGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGC 1384068
Query 252161 CATAGAATAGACGCGCG----GAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATG 252216
| |||| || |||| | | || | | ||| ||| | ||| | || | |
Sbjct 1384067 CGTAGA--AGGCGCGGGCCTCGGAGAGCTG--GACCTCCTTCATGAAGCGGACGGCGAGG 1384012
Query 252217 TTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGA 252276
||||| | || ||||| ||| | | || |||||| | || ||| ||| ||||||
Sbjct 1384011 TTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGATGTGGGTGACGAAGTGG 1383952
Query 252277 CGCTCATCGTCGTTGAGCTTGTCACGCCAGT--CGGCAATGTCCTGATTCAGAGG--AAC 252332
||||| |||||| |||| ||| ||||| ||| | |||||| ||||| |||
Sbjct 1383951 CGCTCGTCGTCGGTGAGGGAGTC---CCAGTGACGG--AGGTCCTG--GGAGAGGTCAAC 1383899
Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTA 252392
|| || | |||||||| | || | | |||||||||||||| | | | | |||||
Sbjct 1383898 CTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTA 1383839
Query 252393 CTTGATTGGGAA 252404
|| ||| |||||
Sbjct 1383838 CTGGATAGGGAA 1383827
>seq652
Length=2384379
Score = 134 bits (148), Expect = 3e-26
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628
|| ||||| | |||| ||||||||||||||| || | || || || || | ||
Sbjct 1151763 TCAATTCCTTCCATGGTTGATGGCCTCAAGCCAGGTCAAAGGAAAATTCTTTTCTGCTCA 1151822
Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688
||||| |||| | || ||||| ||| | || |||||||||||||||||||||||
Sbjct 1151823 TTCAAAAGGAATTTCGTCAAAGAAGCGAAGATTGCCCAGTTTTCTGGTTATGTATCCGAG 1151882
Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748
||| | |||||||||||||| || ||||| || |||| | || ||||| |||
Sbjct 1151883 CATTCAGCATACCATCACGGTGAACAAAGTCTTGCTAGTACCATAATCGGAATGGCTCAG 1151942
Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802
|| ||||| ||||| |||||||| ||| | || | || || || || ||||||
Sbjct 1151943 GATTATGTAGGCAGCAACAACATTAACCTTCTCATGCCGAATGGCCAATTTGGT 1151996
Score = 131 bits (144), Expect = 3e-25
Identities = 171/235 (73%), Gaps = 4/235 (2%)
Strand=Plus/Minus
Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGC- 218627
|| ||||| | |||| ||||||||||||||| || | || || ||||| | ||
Sbjct 2373734 TCGATTCCTTCCATGGTTGATGGCCTCAAGCCAGGTCAAAGGAAAAT--TCTTTACTGCT 2373677
Query 218628 -ATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686
||| || |||| | || ||||| ||||| || ||||||||||||||||||||||
Sbjct 2373676 CATTTAAAAGGAATTTTGTCAAAGAAGCAAAGGTTGCCCAGTTTTCTGGTTATGTATCCG 2373617
Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746
| ||| | |||||||| || ||||| ||||| || |||| | || |||||||
Sbjct 2373616 AGCATTCAGCATACCATCATGGCGAGCAAAGTCTTGCTAGTACCATAATTGGAATGGCAC 2373557
Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801
|||| ||||| ||||| |||||||| ||| | || | || || || || |||||
Sbjct 2373556 AGGATTATGTAGGCAGCAACAACATTAACCTTCTCATGCCGAATGGCCAATTTGG 2373502
>seq130
Length=2958318
Score = 93.3 bits (102), Expect = 9e-14
Identities = 69/81 (85%), Gaps = 0/81 (0%)
Strand=Plus/Minus
Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559
|| |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||
Sbjct 2081576 GAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 2081517
Query 142560 GAGCCCCACATCGGGCAGAAG 142580
||||||||| |||| ||||
Sbjct 2081516 GAGCCCCACGGTGGGCGGAAG 2081496
>seq606
Length=848835
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 242641 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 242582
Query 142563 CCCCAC 142568
||||||
Sbjct 242581 CCCCAC 242576
>seq116
Length=10441785
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 786628 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 786687
Query 142563 CCCCAC 142568
||||||
Sbjct 786688 CCCCAC 786693
>seq87
Length=12262769
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 1997973 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1997914
Query 142563 CCCCAC 142568
||||||
Sbjct 1997913 CCCCAC 1997908
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Minus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 10261704 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10261645
Query 142563 CCCCAC 142568
||||||
Sbjct 10261644 CCCCAC 10261639
>seq86
Length=7715951
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 4527336 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4527395
Query 142563 CCCCAC 142568
||||||
Sbjct 4527396 CCCCAC 4527401
>seq77
Length=8408033
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 5720123 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5720182
Query 142563 CCCCAC 142568
||||||
Sbjct 5720183 CCCCAC 5720188
>seq49
Length=4798478
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 4742026 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4742085
Query 142563 CCCCAC 142568
||||||
Sbjct 4742086 CCCCAC 4742091
>seq24
Length=10012559
Score = 87.8 bits (96), Expect = 4e-12
Identities = 59/66 (89%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562
|||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||
Sbjct 6286958 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6287017
Query 142563 CCCCAC 142568
||||||
Sbjct 6287018 CCCCAC 6287023
>seq85
Length=5226098
Score = 86.0 bits (94), Expect = 1e-11
Identities = 58/65 (89%), Gaps = 0/65 (0%)
Strand=Plus/Minus
Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563
||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||||
Sbjct 4097270 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4097211
Query 142564 CCCAC 142568
|||||
Sbjct 4097210 CCCAC 4097206
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1027357758672216
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |