Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq161 165 2e-35 seq652 134 3e-26 seq130 93.3 9e-14 seq606 87.8 4e-12 seq116 87.8 4e-12 seq87 87.8 4e-12 seq86 87.8 4e-12 seq77 87.8 4e-12 seq49 87.8 4e-12 seq24 87.8 4e-12 seq85 86.0 1e-11 >seq161 Length=5110746 Score = 165 bits (182), Expect = 2e-35 Identities = 553/852 (65%), Gaps = 23/852 (3%) Strand=Plus/Minus Query 251563 TCGAAGAAATTAGACTTGCCCTCCAGAGAGATTAGCTCCATGAAGTCGAAGGGGTTTGTG 251622 |||||||| || | ||| |||| ||| ||||| |||||||| ||||||||||||| | | Sbjct 1384665 TCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTTCGGG 1384606 Query 251623 GCATTGTACTGCTTGGGATGGCCAAGTGCTACGAAGATGCGGTCTGCCACAAACTCCAGA 251682 | ||||| ||| | | | || || ||| || ||||| || || ||||| | Sbjct 1384605 ACGCTGTACATCTTCCCGTAGTCGAGGGCGCCGAGGAGACGGTCGGCGACGAACTCGATG 1384546 Query 251683 TACTGTCCCATCAGTTCAGAGTTCATGCCAATCATACGACAAGGAATTGCCTCACAGATG 251742 ||||| ||||| || || |||||| || | || || || | || || |||| | Sbjct 1384545 TACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGCACGGGAGCGCGTCGCAGACG 1384486 Query 251743 AATTCCTTTTCGTTGGCAACTGCCTCCTCCACAATTGCCTTCACCTGTGCCAGAGACAGC 251802 || ||| | ||| || | || ||||| ||| || || |||| | || | || Sbjct 1384485 AACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCCGCACCCGCTCCTCGCTCGGC 1384426 Query 251803 TTGTTCTCCAGCTTTGAGTACAGGAGCTCGCCAAACTGTTGGTGCAGACCCTCGTCGCGA 251862 || ||| |||| ||||| || || | | || | ||| || |||||||| || Sbjct 1384425 TTCCTCTTCAGCAGCGAGTAGAGCAGGCAGGCGAAGTCGCAGTGGAGGCCCTCGTCCCGG 1384366 Query 251863 CTGATGAACTCGTTGGACAGACCCAGGCCAGGCATCACCCCACGGTTCCTGAGCCAGAAG 251922 ||||| |||||| || | || || ||||| | || || ||| ||||||||||| Sbjct 1384365 GAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAG 1384306 Query 251923 ATTGCGCAAAAGGATCCAGAGAACAGCAGACCCTCGACACACACCCATGCAACAAGGCGC 251982 || ||||| || || ||||| | | |||||||| || | | || | |||||| Sbjct 1384305 ATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGAGGAGGCGC 1384246 Query 251983 TCAGCAAACGACTTG--TCCTGCGACAAGAACTTCTGTGCCCATGCTGCCTTCTTTCCAA 252040 || || || |||| | || |||| | | ||||| | ||||| | | Sbjct 1384245 TCGGCGAAGGACTCGGCGCCGTCGAC--CCAGCGGAGGGCCCAGTCCGCCTTGCGAGCGA 1384188 Query 252041 CCGCGGGGATTGTTTCGATTGCATCAAAGAGAGAGTTCCGCTCGGCATCGTCCTCGATGA 252100 | ||||||| || |||| || ||||| || | |||||| ||||| || | Sbjct 1384187 CGGCGGGGACGGTGTCGACCGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGT 1384128 Query 252101 GCGCATCAAGCAGGAGAGAGTACATCTCCGAATGGATGGATTCGTTGAACATCTGGTAAG 252160 | || || ||||| ||||||||| || |||||| ||| || |||||| | Sbjct 1384127 AGGTCTCGAGGAGGAGGCTGTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGC 1384068 Query 252161 CATAGAATAGACGCGCG----GAAGGGTCGGTGACTTCCGTGGAAAAGTTGTTTGCAATG 252216 | |||| || |||| | | || | | ||| ||| | ||| | || | | Sbjct 1384067 CGTAGA--AGGCGCGGGCCTCGGAGAGCTG--GACCTCCTTCATGAAGCGGACGGCGAGG 1384012 Query 252217 TTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCAAGAATGGTCTTGATGAAGTGA 252276 ||||| | || ||||| ||| | | || |||||| | || ||| ||| |||||| Sbjct 1384011 TTCTCGAGGACGATGCCGTCGGAGGCGGCGAAGAAGGCGAGGATGTGGGTGACGAAGTGG 1383952 Query 252277 CGCTCATCGTCGTTGAGCTTGTCACGCCAGT--CGGCAATGTCCTGATTCAGAGG--AAC 252332 ||||| |||||| |||| ||| ||||| ||| | |||||| ||||| ||| Sbjct 1383951 CGCTCGTCGTCGGTGAGGGAGTC---CCAGTGACGG--AGGTCCTG--GGAGAGGTCAAC 1383899 Query 252333 TTCTTCCACCGTCCAGAATGTGGACACCGCCTTCTTGTACATTGCGAACACATCAGGGTA 252392 || || | |||||||| | || | | |||||||||||||| | | | | ||||| Sbjct 1383898 CTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTA 1383839 Query 252393 CTTGATTGGGAA 252404 || ||| ||||| Sbjct 1383838 CTGGATAGGGAA 1383827 >seq652 Length=2384379 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCA 218628 || ||||| | |||| ||||||||||||||| || | || || || || | || Sbjct 1151763 TCAATTCCTTCCATGGTTGATGGCCTCAAGCCAGGTCAAAGGAAAATTCTTTTCTGCTCA 1151822 Query 218629 TTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCGAA 218688 ||||| |||| | || ||||| ||| | || ||||||||||||||||||||||| Sbjct 1151823 TTCAAAAGGAATTTCGTCAAAGAAGCGAAGATTGCCCAGTTTTCTGGTTATGTATCCGAG 1151882 Query 218689 ATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCACAG 218748 ||| | |||||||||||||| || ||||| || |||| | || ||||| ||| Sbjct 1151883 CATTCAGCATACCATCACGGTGAACAAAGTCTTGCTAGTACCATAATCGGAATGGCTCAG 1151942 Query 218749 GACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGGT 218802 || ||||| ||||| |||||||| ||| | || | || || || || |||||| Sbjct 1151943 GATTATGTAGGCAGCAACAACATTAACCTTCTCATGCCGAATGGCCAATTTGGT 1151996 Score = 131 bits (144), Expect = 3e-25 Identities = 171/235 (73%), Gaps = 4/235 (2%) Strand=Plus/Minus Query 218569 TCTATTCCCAGCGTGGTGGATGGCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGC- 218627 || ||||| | |||| ||||||||||||||| || | || || ||||| | || Sbjct 2373734 TCGATTCCTTCCATGGTTGATGGCCTCAAGCCAGGTCAAAGGAAAAT--TCTTTACTGCT 2373677 Query 218628 -ATTCAAGCGGAACCTGGTTCAAGAAATTAAGGTCGCTCAGTTTTCTGGTTATGTATCCG 218686 ||| || |||| | || ||||| ||||| || |||||||||||||||||||||| Sbjct 2373676 CATTTAAAAGGAATTTTGTCAAAGAAGCAAAGGTTGCCCAGTTTTCTGGTTATGTATCCG 2373617 Query 218687 AAATTTCTGGCTACCATCACGGTGAGCAGAGTCTGCAGGGTGCCATTGTAGGCATGGCAC 218746 | ||| | |||||||| || ||||| ||||| || |||| | || ||||||| Sbjct 2373616 AGCATTCAGCATACCATCATGGCGAGCAAAGTCTTGCTAGTACCATAATTGGAATGGCAC 2373557 Query 218747 AGGACTATGTGGGCAGTAACAACATGAACTTGCTGCTCCCCAACGGTCAGTTTGG 218801 |||| ||||| ||||| |||||||| ||| | || | || || || || ||||| Sbjct 2373556 AGGATTATGTAGGCAGCAACAACATTAACCTTCTCATGCCGAATGGCCAATTTGG 2373502 >seq130 Length=2958318 Score = 93.3 bits (102), Expect = 9e-14 Identities = 69/81 (85%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 142500 GATAGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTC 142559 || |||||| ||||||||| |||||||||| || ||||||| || |||||||||||||| Sbjct 2081576 GAAAGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTC 2081517 Query 142560 GAGCCCCACATCGGGCAGAAG 142580 ||||||||| |||| |||| Sbjct 2081516 GAGCCCCACGGTGGGCGGAAG 2081496 >seq606 Length=848835 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 242641 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 242582 Query 142563 CCCCAC 142568 |||||| Sbjct 242581 CCCCAC 242576 >seq116 Length=10441785 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 786628 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 786687 Query 142563 CCCCAC 142568 |||||| Sbjct 786688 CCCCAC 786693 >seq87 Length=12262769 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 1997973 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 1997914 Query 142563 CCCCAC 142568 |||||| Sbjct 1997913 CCCCAC 1997908 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 10261704 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 10261645 Query 142563 CCCCAC 142568 |||||| Sbjct 10261644 CCCCAC 10261639 >seq86 Length=7715951 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4527336 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4527395 Query 142563 CCCCAC 142568 |||||| Sbjct 4527396 CCCCAC 4527401 >seq77 Length=8408033 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 5720123 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 5720182 Query 142563 CCCCAC 142568 |||||| Sbjct 5720183 CCCCAC 5720188 >seq49 Length=4798478 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 4742026 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 4742085 Query 142563 CCCCAC 142568 |||||| Sbjct 4742086 CCCCAC 4742091 >seq24 Length=10012559 Score = 87.8 bits (96), Expect = 4e-12 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 |||||| ||||||||| |||||||||| || ||||||| || ||||||||||||||||| Sbjct 6286958 AGCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 6287017 Query 142563 CCCCAC 142568 |||||| Sbjct 6287018 CCCCAC 6287023 >seq85 Length=5226098 Score = 86.0 bits (94), Expect = 1e-11 Identities = 58/65 (89%), Gaps = 0/65 (0%) Strand=Plus/Minus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 ||||| ||||||||| |||||||||| || ||||||| || |||||||||||||||||| Sbjct 4097270 GCCCGTCTAGCTCAGTTGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 4097211 Query 142564 CCCAC 142568 ||||| Sbjct 4097210 CCCAC 4097206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027357758672216