Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_008725.1 Length=111953 Score E Sequences producing significant alignments: (Bits) Value seq203 98.7 7e-16 seq49 86.0 4e-12 >seq203 Length=8626763 Score = 98.7 bits (108), Expect = 7e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 |||||||| ||| | ||||| | |||||||| || || ||| | || |||| | | Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | || | || ||||||| || || || || | ||| |||| Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCCGGACCAG 5730049 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| ||||||||||||||||| || || |||||| ||| |||||||||| || Sbjct 5730050 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAAC 5730109 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 ||||||||||| ||||| || || |||| | ||| | | ||||| Sbjct 5730110 ATTCAGAAGGAGTCTACCCTCCACTTGGTGCTCCGTCTCAGGGGAGG 5730156 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || || | || || | || || || ||||| || ||||| |||| | | Sbjct 5730386 ATGCAGATTTTCGTGAAGACGCTTACCGGGAAGACCATAACTTTGGAAGTGGAAAGCTCG 5730445 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || || | | | || ||||| |||||| || || |||||| | || |||| Sbjct 5730446 GACACCATTGACAATGTTAAGGCGAAAATTCAAGACAAGGAGGGTATTCCCCCGGACCAG 5730505 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 |||||||||||||| |||||||| || || |||||| | ||| | || || || || Sbjct 5730506 CAGAGACTTATCTTCGCTGGCAAGCAGCTTGAAGATGGCAGGACTCTTGCAGACTATAAC 5730565 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTT 22051 || ||||| || |||||||| || |||| | ||||| Sbjct 5730566 ATCCAGAAAGAGTCTACTCTCCACTTGGTGCTCCGTTT 5730603 >seq49 Length=4798478 Score = 86.0 bits (94), Expect = 4e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 21834 ATGCAAATATTTATTAAAACATTAACGGGCAAAACCATTACCGTGGAAACGGAAGCCGCA 21893 ||||| || ||| | || || | || ||||| ||||||||| | || ||| | | Sbjct 2845980 ATGCAGATCTTTGTGAAGACCCTCACCGGCAAGACCATTACCCTCGAGGTTGAAAGCTCG 2846039 Query 21894 GAAACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAGGGTGTACCTGTAAACCAA 21953 || ||| | | || | ||| || ||| || |||||||| | ||| |||| Sbjct 2846040 GACACGATTGATAATGTCAAGGCCAAGATTCAAGACAAAGAGGGAATCCCTCCTGACCAG 2846099 Query 21954 CAGAGACTTATCTTTGCTGGCAAACAACTAGAAGATTTAAAAACTATGGCCGATTACAAT 22013 ||||| || |||||||||||||| || || || ||| || |||| |||||||| Sbjct 2846100 CAGAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACCCTGGCTGATTACAAC 2846159 Query 22014 ATTCAGAAGGAATCTACTCTTCATATGGTATTACGTTTACGAGGAGG 22060 || || |||||||| || |||||| |||| | ||| | |||| || Sbjct 2846160 ATCCAAAAGGAATCCACCCTTCATTTGGTGCTTCGTCTGAGAGGTGG 2846206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357966031637104