Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq161 437 2e-117 >seq161 Length=5110746 Score = 437 bits (484), Expect = 2e-117 Identities = 621/864 (72%), Gaps = 12/864 (1%) Strand=Plus/Plus Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344 ||| || ||| | | |||||| |||||||||||||| || |||| |||||||||| Sbjct 1383833 ATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCC 1383892 Query 42345 GAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403 |||||| ||||||| || ||||| | | | |||||| || || | || |||| Sbjct 1383893 GAGGAGGTTGACCTCTCCCAGGACCTCCGTCA-CTGGGACTCCCTCACCGACGACGAGCG 1383951 Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463 ||| ||| |||| || ||||||||||||||||| |||||||| ||| ||||| Sbjct 1383952 CCACTTCGTCACCCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAA 1384011 Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523 ||| ||| | | |||||||| ||||| ||| || ||||| ||| |||||||||||| Sbjct 1384012 CCTCGCCGTCCGCTTCATGAAGGAGGTCCAGCTCTCCGAGGCCCGCGCCTTCTACGGCTT 1384071 Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583 |||||| ||||| |||||| | ||||| ||| ||||| | || ||| | || ||| | Sbjct 1384072 CCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACGT 1384131 Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643 | ||| ||| |||| || | || ||| || | || || | ||| | || Sbjct 1384132 CAAGGACTCCGCCGAGAAGGACCGCCTCTTCCGCGCGGTCGACACCGTCCCCGCCGTCGC 1384191 Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 |||||||||||||| ||| |||| |||| | |||| | |||| |||| | Sbjct 1384192 TCGCAAGGCGGACTGGGCCCTCCGCTGGGTCGACGGCGCCGAGTCC---TTCGCCGAGCG 1384248 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 || | ||||| || ||||||||||||||||||||| ||| ||| | ||||||| Sbjct 1384249 CCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGTTTCTGCGCCATCTT 1384308 Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822 |||||||||| || || || ||||| || ||||||||||||||||| |||||| | Sbjct 1384309 CTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGGCTCACCTTCTCGAACGAGCTCATCTCCC 1384367 Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882 |||||||||| || || | ||||| |||||||| || | |||| | || | | | Sbjct 1384368 GGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTGCTCTACTCG---CTGCTGAAGAGGA 1384424 Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942 |||| |||||||||| |||| ||| | ||||||||||| ||||||| ||||| Sbjct 1384425 AGCCGAGCGAGGAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTGGACATCGAGAGGGAGT 1384484 Query 42943 TCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001 || || | |||| |||||| ||||||| || ||||||| ||||||||| || || Sbjct 1384485 TCGTCTGCGACGCGCT-CCCGTGCGCCCTGGTGGGGATGAACCGGGACCTCATGGGCCAG 1384543 Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061 |||||| ||| ||||||||||| |||||| || | | | | | |||| | Sbjct 1384544 TACATCGAGTTCGTCGCCGACCGTCTCCTCGGCGCCCTCGACTACGGGAAGATGTACAGC 1384603 Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121 ||| ||||||||||| |||||| ||||||| || |||| ||||||||||| ||| Sbjct 1384604 GTCCCGAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTC 1384663 Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145 |||||||| |||| || |||||| Sbjct 1384664 GAGAAGCGGGTCGGGGAGTACCAG 1384687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 943909808965760