Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq161 437 2e-117
>seq161
Length=5110746
Score = 437 bits (484), Expect = 2e-117
Identities = 621/864 (72%), Gaps = 12/864 (1%)
Strand=Plus/Plus
Query 42285 ATCGAGCACCAGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCC 42344
||| || ||| | | |||||| |||||||||||||| || |||| ||||||||||
Sbjct 1383833 ATCCAGTACCCGCAGATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCC 1383892
Query 42345 GAGGAGATTGACCTGGCCAAGGACA-CGGCCGGCTGGGAGTCACTGTCTGAGAACGAAAA 42403
|||||| ||||||| || ||||| | | | |||||| || || | || ||||
Sbjct 1383893 GAGGAGGTTGACCTCTCCCAGGACCTCCGTCA-CTGGGACTCCCTCACCGACGACGAGCG 1383951
Query 42404 GTTTTTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAA 42463
||| ||| |||| || ||||||||||||||||| |||||||| ||| |||||
Sbjct 1383952 CCACTTCGTCACCCACATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAA 1384011
Query 42464 CCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTT 42523
||| ||| | | |||||||| ||||| ||| || ||||| ||| ||||||||||||
Sbjct 1384012 CCTCGCCGTCCGCTTCATGAAGGAGGTCCAGCTCTCCGAGGCCCGCGCCTTCTACGGCTT 1384071
Query 42524 CCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACAT 42583
|||||| ||||| |||||| | ||||| ||| ||||| | || ||| | || ||| |
Sbjct 1384072 CCAGATCGCCATCGAGAACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACGT 1384131
Query 42584 CCTGGATCCCGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAA 42643
| ||| ||| |||| || | || ||| || | || || | ||| | ||
Sbjct 1384132 CAAGGACTCCGCCGAGAAGGACCGCCTCTTCCGCGCGGTCGACACCGTCCCCGCCGTCGC 1384191
Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703
|||||||||||||| ||| |||| |||| | |||| | |||| |||| |
Sbjct 1384192 TCGCAAGGCGGACTGGGCCCTCCGCTGGGTCGACGGCGCCGAGTCC---TTCGCCGAGCG 1384248
Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763
|| | ||||| || ||||||||||||||||||||| ||| ||| | |||||||
Sbjct 1384249 CCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGTTTCTGCGCCATCTT 1384308
Query 42764 CTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA 42822
|||||||||| || || || ||||| || ||||||||||||||||| |||||| |
Sbjct 1384309 CTGGCTCAAGAAGCGCGGCCTC-ATGCCGGGGCTCACCTTCTCGAACGAGCTCATCTCCC 1384367
Query 42823 GGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACA 42882
|||||||||| || || | ||||| |||||||| || | |||| | || | | |
Sbjct 1384368 GGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTGCTCTACTCG---CTGCTGAAGAGGA 1384424
Query 42883 AGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGT 42942
|||| |||||||||| |||| ||| | ||||||||||| ||||||| |||||
Sbjct 1384425 AGCCGAGCGAGGAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTGGACATCGAGAGGGAGT 1384484
Query 42943 TCCTCACGCAGTCGCTGCCCGTG-TCCCTGGTCGGCATGAACCACGACCTCATGTGCAAG 43001
|| || | |||| |||||| ||||||| || ||||||| ||||||||| || ||
Sbjct 1384485 TCGTCTGCGACGCGCT-CCCGTGCGCCCTGGTGGGGATGAACCGGGACCTCATGGGCCAG 1384543
Query 43002 TACATCCAGTACGTCGCCGACCATCTCCTGTGCCAGATGGGTCTCAGCCGCCTCTACAAC 43061
|||||| ||| ||||||||||| |||||| || | | | | | |||| |
Sbjct 1384544 TACATCGAGTTCGTCGCCGACCGTCTCCTCGGCGCCCTCGACTACGGGAAGATGTACAGC 1384603
Query 43062 ACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGACCAACTTTTTC 43121
||| ||||||||||| |||||| ||||||| || |||| ||||||||||| |||
Sbjct 1384604 GTCCCGAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTC 1384663
Query 43122 GAGAAGCGCGTCGCCGACTACCAG 43145
|||||||| |||| || ||||||
Sbjct 1384664 GAGAAGCGGGTCGGGGAGTACCAG 1384687
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 943909808965760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |