Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_009503.1 Length=124121 Score E Sequences producing significant alignments: (Bits) Value seq652 93.3 3e-14 seq116 93.3 3e-14 seq49 93.3 3e-14 >seq652 Length=2384379 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| || ||||||| ||||| ||| ||||| ||||||||||| |||| | Sbjct 465056 CCTCCCCTCAGACGGAGCACCAAGTGAAGGGTGGATTCCTTTTGAATGTTGTAGTCTG-C 464998 Query 33961 AATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 | ||| || | || || | ||||||||| ||||| |||| | |||||| || | Sbjct 464997 GAGCGTCCTGC-CATCCTCGAGTTGCTTGCCAGCAAAAATCAACCTCTGCTGGTCTGGGG 464939 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGATTCGC 34078 | | | ||| |||||| ||||| ||| | | | | | | || | | |||| Sbjct 464938 GGATTCCCTCCTTGTCCTGGATTTTCGCCTTCACGTTATCGATAGTGTCCGAACTTTCGA 464879 Query 34079 ATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 |||| ||||| || || || || || || ||||||||||||||||| Sbjct 464878 CCTCGAGGGTTATGGTCTTGCCAGTGAGGGTCTTCACAAAGATTTGCAT 464830 >seq116 Length=10441785 Score = 93.3 bits (102), Expect = 3e-14 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 33900 ACCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGC 33959 |||||| | |||| ||| || || || |||||| ||||||||| ||||||||||| | Sbjct 4711843 ACCTCCGCGGAGCCTCAGGACGAGGTGGAGCGTGGACTCCTTCTGGATGTTGTAATC-GG 4711901 Query 33960 CAATTGTC--GCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACC 34017 | | ||| || |||| || | ||||| ||||| || ||||| |||||||||||| | Sbjct 4711902 CGAGGGTCCTGC-CGTCCTCGAGCTGCTTTCCGGCGAAGATCAGACGCTGCTGATCCGGC 4711960 Query 34018 GGCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTCACACTATCAGTAGAT-TC 34076 || | || ||| |||||| || || ||| | | | | | || | || | || Sbjct 4711961 GGGATGCCCTCCTTGTCCTGGATCTTGGCCTTGACGTTATCGATCGTGTCCG-AGCTCTC 4712019 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCAT 34127 | |||| ||| || ||||| ||||| || || || || ||||| ||||| Sbjct 4712020 GACCTCGAGCGTGATGGTTTTGCCGGTCAGGGTCTTGACGAAGATCTGCAT 4712070 Score = 86.0 bits (94), Expect = 5e-12 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| | |||| ||||| || ||||||||| ||||||||| |||||||| || || Sbjct 4712300 CCTCCACGGAGCCTGAGCACGAGGTGAAGCGTGGACTCCTTCTGGATGTTGTAGTCGGCG 4712359 Query 33961 AATTGTCGCTCGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCGGC 34020 | || |||| || | ||||||||||| || || |||||||||||||| || Sbjct 4712360 AGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGATCGGGAGGG 4712419 Query 34021 ACGCTCTCTTTGTCC 34035 | || ||| |||||| Sbjct 4712420 ATGCCCTCCTTGTCC 4712434 >seq49 Length=4798478 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||||| ||||| ||||| |||| ||||| ||| ||| ||||| ||||||||||| ||| Sbjct 2841084 CCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGCC 2841025 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | || || |||||||| || || | |||||||||| | Sbjct 2841024 AA-AGTC-CTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGG 2840967 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TC 34076 | | || || |||||| | | |||| |||| | || | | |||| || | || Sbjct 2840966 GAATGCCTTCCTTGTCC-TGAATTTTCGCTTTGACGTTGTCGATGGTGTCAG-AGCTCTC 2840909 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || |||||||| || || || || |||||||| ||||||||| Sbjct 2840908 AACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857 Score = 93.3 bits (102), Expect = 3e-14 Identities = 165/232 (71%), Gaps = 8/232 (3%) Strand=Plus/Minus Query 33901 CCTCCTCTCAGCCGCAGCACCAGATGAAGCGTGCTCTCCTTCTGAATGTTGTAATCTGCC 33960 ||| | ||||| ||||| |||| ||||| ||| ||||||||| ||||||||||| ||| Sbjct 2847072 CCTGCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCC 2847013 Query 33961 AATTGTCGCT--CGTCGTCCAATTGCTTGCCGGCAAATATCAGGCGCTGCTGATCCACCG 34018 || ||| || | || || | || || || ||||| || || | |||||||||| | Sbjct 2847012 AA-AGTC-CTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGG 2846955 Query 34019 GCACGCTCTCTTTGTCCATAATTTTTTGCTTAATGGAACTC-ACACTATCAGTAGAT-TC 34076 | | || || |||||| | | ||||||||| | || | | |||| || | || Sbjct 2846954 GAATGCCTTCCTTGTCC-TGAATTTTTGCTTTGACGTTGTCGATGGTGTCAG-AGCTCTC 2846897 Query 34077 GCATTCGACCGTTATTGTTTTTCCGGTTAGTGTTTTCACAAAGATTTGCATT 34128 ||| | || |||||||| || || || || |||||||| ||||||||| Sbjct 2846896 AACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCATT 2846845 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396886369333552