Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_009899.1
Length=344691
Score E
Sequences producing significant alignments: (Bits) Value
seq161 150 4e-31
>seq161
Length=5110746
Score = 150 bits (166), Expect = 4e-31
Identities = 308/455 (68%), Gaps = 6/455 (1%)
Strand=Plus/Plus
Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345
|| || || ||||| ||| |||||| | ||||| || || || | || ||||| |||
Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294
Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405
|||||||||||||| ||||| ||| || | ||||| || ||| | || |||
Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354
Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465
||| ||||| || ||||||||||| ||| | |||| || | || || |
Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTGCTCTACTCGCTG 1384414
Query 243466 CTCCAGAACAAGCTACCATTCGA--AACGG-TCAAACAAATCATCACAGAAGCAGTTGAA 243522
|| ||| |||| | ||| | ||| | ||| | || || || ||
Sbjct 1384415 CTGAAGAGGAAGC---CGAGCGAGGAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTGGAC 1384471
Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582
| ||| | ||| ||| | |||||||| | || ||| || | || |||||| ||
Sbjct 1384472 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCGTGCGCCCTGGTGGGGATGAACCGGGAC 1384531
Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642
|||||||| ||||||||||| ||||| |||||||| | || ||| || | || | |
Sbjct 1384532 CTCATGGGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGGCGCCCTCGACTACGGG 1384591
Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702
|| |||||| | | ||||||||| | || ||||||||||| ||||| || |||||
Sbjct 1384592 AAGATGTACAGCGTCCCGAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAG 1384651
Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737
|| ||||||||||| ||||| ||| | || || ||
Sbjct 1384652 ACCAACTTCTTCGAGAAGCGGGTCGGGGAGTACCA 1384686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1102365983475600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |