Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq161 150 4e-31 >seq161 Length=5110746 Score = 150 bits (166), Expect = 4e-31 Identities = 308/455 (68%), Gaps = 6/455 (1%) Strand=Plus/Plus Query 243286 TCATTTGCTGAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGT 243345 || || || ||||| ||| |||||| | ||||| || || || | || ||||| ||| Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294 Query 243346 TTCTGCGCCATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAAC 243405 |||||||||||||| ||||| ||| || | ||||| || ||| | || ||| Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354 Query 243406 GAGTTCATCAGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAG 243465 ||| ||||| || ||||||||||| ||| | |||| || | || || | Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCACTGCGACTTCGCCTGCCTGCTCTACTCGCTG 1384414 Query 243466 CTCCAGAACAAGCTACCATTCGA--AACGG-TCAAACAAATCATCACAGAAGCAGTTGAA 243522 || ||| |||| | ||| | ||| | ||| | || || || || Sbjct 1384415 CTGAAGAGGAAGC---CGAGCGAGGAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTGGAC 1384471 Query 243523 AACGAAAAGGAATTCATTTGCGACGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAA 243582 | ||| | ||| ||| | |||||||| | || ||| || | || |||||| || Sbjct 1384472 ATCGAGAGGGAGTTCGTCTGCGACGCGCTCCCGTGCGCCCTGGTGGGGATGAACCGGGAC 1384531 Query 243583 CTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAG 243642 |||||||| ||||||||||| ||||| |||||||| | || ||| || | || | | Sbjct 1384532 CTCATGGGCCAGTACATCGAGTTCGTCGCCGACCGTCTCCTCGGCGCCCTCGACTACGGG 1384591 Query 243643 AAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAA 243702 || |||||| | | ||||||||| | || ||||||||||| ||||| || ||||| Sbjct 1384592 AAGATGTACAGCGTCCCGAACCCCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAG 1384651 Query 243703 ACTAACTTCTTCGAAAAGCGTGTCAGTGATTATCA 243737 || ||||||||||| ||||| ||| | || || || Sbjct 1384652 ACCAACTTCTTCGAGAAGCGGGTCGGGGAGTACCA 1384686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102365983475600