Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq161 158 1e-33 seq49 96.9 4e-15 >seq161 Length=5110746 Score = 158 bits (174), Expect = 1e-33 Identities = 313/456 (69%), Gaps = 12/456 (3%) Strand=Plus/Minus Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817 ||| ||||| |||||||||||||||||||| |||||||| | || ||| |||||| Sbjct 1384684 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCAT 1384625 Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876 | || || |||||| | | | || | | | | | | |||||||| Sbjct 1384624 CCAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCC-GAGGAGAC 1384566 Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936 | || | |||| |||| ||||||| ||| || |||||| || | ||| | Sbjct 1384565 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGC 1384506 Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996 | ||||||||||| ||| |||| || |||| || |||||||| || |||||||| | Sbjct 1384505 ACGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCC 1384446 Query 125997 GAATGGTGTCCACCCCAGGT---CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053 | | ||| | | || || || ||| | | || || || ||| || | Sbjct 1384445 GCACCCGCTCCTCGCTCGGCTTCCTCTTCAGCAGCGAGTAGAGCAGG--CA-GGCGAAGT 1384389 Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113 | |||||| |||||||| ||||||||||| || ||||||||| || || ||||||| Sbjct 1384388 CGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGA 1384329 Query 126114 GACCCCGCTTCTTCAACCAGAAAAT--CGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171 | || |||||||| | |||||| || |||| ||| || || ||||||||||| ||||| Sbjct 1384328 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTG--CCGGAGAAGAAGATGCCCTC 1384271 Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207 || || ||||| || | ||| ||||| || ||||| Sbjct 1384270 GACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235 >seq49 Length=4798478 Score = 96.9 bits (106), Expect = 4e-15 Identities = 189/277 (68%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935 ||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913 Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995 | ||| || | | ||| | || || || ||||| ||||| || || || || || Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973 Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054 || || |||| || || ||||| | || | ||||| |||||||| |||| Sbjct 1563974 AGG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCA 1564032 Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114 |||||| |||||||| | || || | ||| || ||| || || | ||||| | Sbjct 1564033 CAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAG 1564092 Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151 | | || | || | ||||||||||| ||||| || Sbjct 1564093 CCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597081983318080