Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq161 158 1e-33
seq49 96.9 4e-15
>seq161
Length=5110746
Score = 158 bits (174), Expect = 1e-33
Identities = 313/456 (69%), Gaps = 12/456 (3%)
Strand=Plus/Minus
Query 125758 GTAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCAT 125817
||| ||||| |||||||||||||||||||| |||||||| | || ||| ||||||
Sbjct 1384684 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCAT 1384625
Query 125818 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 125876
| || || |||||| | | | || | | | | | | ||||||||
Sbjct 1384624 CCAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCC-GAGGAGAC 1384566
Query 125877 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 125936
| || | |||| |||| ||||||| ||| || |||||| || | ||| |
Sbjct 1384565 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGC 1384506
Query 125937 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCACGATGGCGT 125996
| ||||||||||| ||| |||| || |||| || |||||||| || |||||||| |
Sbjct 1384505 ACGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCC 1384446
Query 125997 GAATGGTGTCCACCCCAGGT---CTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACT 126053
| | ||| | | || || || ||| | | || || || ||| || |
Sbjct 1384445 GCACCCGCTCCTCGCTCGGCTTCCTCTTCAGCAGCGAGTAGAGCAGG--CA-GGCGAAGT 1384389
Query 126054 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGA 126113
| |||||| |||||||| ||||||||||| || ||||||||| || || |||||||
Sbjct 1384388 CGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGA 1384329
Query 126114 GACCCCGCTTCTTCAACCAGAAAAT--CGCACAAAATGAACCCGAGAAGAAGATTCCCTC 126171
| || |||||||| | |||||| || |||| ||| || || ||||||||||| |||||
Sbjct 1384328 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTG--CCGGAGAAGAAGATGCCCTC 1384271
Query 126172 CACACACGCGAACGCAAAGAGACGCTCAGCAAAGGA 126207
|| || ||||| || | ||| ||||| || |||||
Sbjct 1384270 GACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235
>seq49
Length=4798478
Score = 96.9 bits (106), Expect = 4e-15
Identities = 189/277 (68%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 10876 AAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGG 10935
||| ||||||||||||||||| || |||||||| ||||| || | ||||||||| |
Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913
Query 10936 CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACA 10995
| ||| || | | ||| | || || || ||||| ||||| || || || || ||
Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973
Query 10996 CGGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCA 11054
|| || |||| || || ||||| | || | ||||| |||||||| ||||
Sbjct 1563974 AGG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCA 1564032
Query 11055 CAAACATTTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCG 11114
|||||| |||||||| | || || | ||| || ||| || || | ||||| |
Sbjct 1564033 CAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAG 1564092
Query 11115 CGATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCAGG 11151
| | || | || | ||||||||||| ||||| ||
Sbjct 1564093 CCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597081983318080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |