Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_011423.1 Length=111724 Score E Sequences producing significant alignments: (Bits) Value seq203 89.7 4e-13 seq49 84.2 2e-11 >seq203 Length=8626763 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027 || || || |||||||| || || || ||||| |||||| | ||| | ||||| Sbjct 5730138 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCCATCTTCA 5730079 Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087 | || |||||||| | || | | ||| ||||| || || ||||||||||| | Sbjct 5730078 AGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGA 5730019 Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147 ||||| ||||||| | || || || ||| |||| || || | ||| || || || Sbjct 5730018 ATTTTTGCTTTTACATTATCGATTGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTG 5729959 Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || ||||| ||||| |||||||| Sbjct 5729958 CCCGTAAGGGTTTTCACAAAGATTTGCAT 5729930 >seq49 Length=4798478 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007 ||||||||| || | | || ||||||||||| || || ||||| ||||||||||| Sbjct 2846208 TGCCACCTCTCAGACGAAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAG 2846149 Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067 || | | | | || || | || |||||||| | || | | ||| ||||| | Sbjct 2846148 CCAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAG 2846089 Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127 | ||||| || ||||| ||| ||| || ||| | || || || || |||| | Sbjct 2846088 GGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCAA 2846029 Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 | || | ||||||||| || || || || || || ||||| || ||||| Sbjct 2846028 CCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || ||||| || ||||||||||| | | | || | ||||| Sbjct 2841067 AACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTC 2841008 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || ||||| || || | || | | ||| || || ||||| ||||||||||| Sbjct 2841007 TAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 2840948 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| || | || || || || | || || || || || || ||||| Sbjct 2840947 AATTTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTT 2840888 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 2840887 CCCAGTAAGGGTCTTCACAAAAATTTGCAT 2840858 Score = 82.4 bits (90), Expect = 5e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026 ||| || ||||| || || || || || ||||||||||| | | | || | ||||| Sbjct 2847055 AACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTC 2846996 Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086 || ||||| ||||| | || | | ||| || || ||||| ||||||||||| Sbjct 2846995 TAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 2846936 Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146 |||||| ||| || | || || || || | || || || || || || ||||| Sbjct 2846935 AATTTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTT 2846876 Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176 || || || || || |||||||||||||| Sbjct 2846875 CCCAGTAAGGGTCTTCACAAAAATTTGCAT 2846846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357233556511160