Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_011423.1
Length=111724
Score E
Sequences producing significant alignments: (Bits) Value
seq203 89.7 4e-13
seq49 84.2 2e-11
>seq203
Length=8626763
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 14968 ACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTCT 15027
|| || || |||||||| || || || ||||| |||||| | ||| | |||||
Sbjct 5730138 ACCAAGTGGAGGGTAGACTCCTTCTGAATGTTATAATCGGCCAAGGTTCGGCCATCTTCA 5730079
Query 15028 AATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACAA 15087
| || |||||||| | || | | ||| ||||| || || ||||||||||| |
Sbjct 5730078 AGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGAGGGATCCCTTCCTTGTCTTGA 5730019
Query 15088 ATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTTA 15147
||||| ||||||| | || || || ||| |||| || || | ||| || || ||
Sbjct 5730018 ATTTTTGCTTTTACATTATCGATTGTGTCGGAGCTTTCCACCTCAAGGGTGATTGTCTTG 5729959
Query 15148 CCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || ||||| ||||| ||||||||
Sbjct 5729958 CCCGTAAGGGTTTTCACAAAGATTTGCAT 5729930
>seq49
Length=4798478
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Minus
Query 14948 TGCCACCTCGCAATCTTAAAACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGC 15007
||||||||| || | | || ||||||||||| || || ||||| |||||||||||
Sbjct 2846208 TGCCACCTCTCAGACGAAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCAG 2846149
Query 15008 TGAGAATTCTCGCGTCTTCTAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTG 15067
|| | | | | || || | || |||||||| | || | | ||| ||||| |
Sbjct 2846148 CCAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGAG 2846089
Query 15068 GAATTCCTTCCTTGTCACAAATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTA 15127
| ||||| || ||||| ||| ||| || ||| | || || || || |||| |
Sbjct 2846088 GGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCAA 2846029
Query 15128 CGTCTAAGGTAATGGTTTTACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
| || | ||||||||| || || || || || || ||||| || |||||
Sbjct 2846028 CCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || ||||| || || ||||| || ||||||||||| | | | || | |||||
Sbjct 2841067 AACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTC 2841008
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
|| ||||| || || | || | | ||| || || ||||| |||||||||||
Sbjct 2841007 TAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 2840948
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|||||| ||| || | || || || || | || || || || || || |||||
Sbjct 2840947 AATTTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTT 2840888
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||||||||||||
Sbjct 2840887 CCCAGTAAGGGTCTTCACAAAAATTTGCAT 2840858
Score = 82.4 bits (90), Expect = 5e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 14967 AACTAAATGAAGGGTAGAATCTTTTTGTATGTTGTAATCGCTGAGAATTCTCGCGTCTTC 15026
||| || ||||| || || || || || ||||||||||| | | | || | |||||
Sbjct 2847055 AACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCATCTTC 2846996
Query 15027 TAATTGTTTGCCAGCGTATATCAAACGCTGTTGGTCGTTTGGAATTCCTTCCTTGTCACA 15086
|| ||||| ||||| | || | | ||| || || ||||| |||||||||||
Sbjct 2846995 TAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTGTCCTG 2846936
Query 15087 AATTTTGCTTTTTACAATTTCTATAGTATCGCTATTTTCTACGTCTAAGGTAATGGTTTT 15146
|||||| ||| || | || || || || | || || || || || || |||||
Sbjct 2846935 AATTTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGATTGTTTT 2846876
Query 15147 ACCTGTCAGAGTTTTTACAAAAATTTGCAT 15176
|| || || || || ||||||||||||||
Sbjct 2846875 CCCAGTAAGGGTCTTCACAAAAATTTGCAT 2846846
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 357233556511160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |