Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq161 150 2e-31
seq49 98.7 1e-15
>seq161
Length=5110746
Score = 150 bits (166), Expect = 2e-31
Identities = 309/454 (68%), Gaps = 8/454 (2%)
Strand=Plus/Minus
Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290
||| |||||||||||||||||||||||||| |||||||| | || ||| ||||||
Sbjct 1384684 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCAT 1384625
Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 127349
| || || |||||| | | | || | | | | | | ||||||||
Sbjct 1384624 CCAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCC-GAGGAGAC 1384566
Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409
| || | |||| |||| ||||||| ||| || |||||| || | ||| |
Sbjct 1384565 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGC 1384506
Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469
| ||||||||||| ||| |||| || |||| |||||||| || || || ||||| |
Sbjct 1384505 ACGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCC 1384446
Query 127470 GAATAGTGTCCACCCCAGGT---CTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACT 127526
| | ||| | | || || || | | | | || || || || || |
Sbjct 1384445 GCACCCGCTCCTCGCTCGGCTTCCTCTTCAGCAGCGAGTAGAGCAGG--CAG-GCGAAGT 1384389
Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586
| |||||| |||||||| ||||||||||| || ||||||||| || || |||||||
Sbjct 1384388 CGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGA 1384329
Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646
| || |||||||| | |||||| || || || || ||| ||||||||||| ||||| |
Sbjct 1384328 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGA 1384269
Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680
| || ||||| || | || |||||||| |||||
Sbjct 1384268 CGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235
>seq49
Length=4798478
Score = 98.7 bits (108), Expect = 1e-15
Identities = 189/276 (68%), Gaps = 2/276 (1%)
Strand=Plus/Plus
Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851
|| ||||||||||||||||| || |||||||| ||||| || | ||||||||| |
Sbjct 1563855 AAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCCT 1563914
Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911
| ||| || | | ||| | || || || ||||| || ||||| || || || ||
Sbjct 1563915 CCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCAA 1563974
Query 12912 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970
|| || |||| || || ||||| | || | ||||| |||||||| |||||
Sbjct 1563975 GG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCAC 1564033
Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030
||||| ||||||||| | || || | ||| || ||| || || | ||||| ||
Sbjct 1564034 AAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAGC 1564093
Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066
| || | || | ||||||||||| ||||| ||
Sbjct 1564094 CACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613228238276160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |