Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq161 150 2e-31 seq49 98.7 1e-15 >seq161 Length=5110746 Score = 150 bits (166), Expect = 2e-31 Identities = 309/454 (68%), Gaps = 8/454 (2%) Strand=Plus/Minus Query 127231 GTAGTCCCCGACCCGCTTCTCGAAGAAGTTTGTCTTCCCATCGAGGCTGATATTCTCCAT 127290 ||| |||||||||||||||||||||||||| |||||||| | || ||| |||||| Sbjct 1384684 GTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCAT 1384625 Query 127291 AAAATCAAATGGGTTCTTTGAGTTCCAAATTGTTG-GCACCCCAATCTGTTTGAGGAGAC 127349 | || || |||||| | | | || | | | | | | |||||||| Sbjct 1384624 CCAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCC-GAGGAGAC 1384566 Query 127350 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATGAGGTTAC 127409 | || | |||| |||| ||||||| ||| || |||||| || | ||| | Sbjct 1384565 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGC 1384506 Query 127410 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGTACGATGGCGT 127469 | ||||||||||| ||| |||| || |||| |||||||| || || || ||||| | Sbjct 1384505 ACGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCC 1384446 Query 127470 GAATAGTGTCCACCCCAGGT---CTATTGCGTAAAGTCTTGAAGAGTTCCACAGCAAACT 127526 | | ||| | | || || || | | | | || || || || || | Sbjct 1384445 GCACCCGCTCCTCGCTCGGCTTCCTCTTCAGCAGCGAGTAGAGCAGG--CAG-GCGAAGT 1384389 Query 127527 CTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGA 127586 | |||||| |||||||| ||||||||||| || ||||||||| || || ||||||| Sbjct 1384388 CGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGA 1384329 Query 127587 GACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCA 127646 | || |||||||| | |||||| || || || || ||| ||||||||||| ||||| | Sbjct 1384328 GGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGA 1384269 Query 127647 CACACGCGAACGCAAATAGACGCTCGGCAAAGGA 127680 | || ||||| || | || |||||||| ||||| Sbjct 1384268 CGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235 >seq49 Length=4798478 Score = 98.7 bits (108), Expect = 1e-15 Identities = 189/276 (68%), Gaps = 2/276 (1%) Strand=Plus/Plus Query 12792 AAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCGGGC 12851 || ||||||||||||||||| || |||||||| ||||| || | ||||||||| | Sbjct 1563855 AAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCCT 1563914 Query 12852 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGATACAC 12911 | ||| || | | ||| | || || || ||||| || ||||| || || || || Sbjct 1563915 CCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCAA 1563974 Query 12912 GGTTGATTTTCAC-GGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCAC 12970 || || |||| || || ||||| | || | ||||| |||||||| ||||| Sbjct 1563975 GG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCAC 1564033 Query 12971 AAACATCTCCACAAAATTGGCGGCGGAACATTGGATGAAGGGGACGTTGGATTCACCCGC 13030 ||||| ||||||||| | || || | ||| || ||| || || | ||||| || Sbjct 1564034 AAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAGC 1564093 Query 13031 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGG 13066 | || | || | ||||||||||| ||||| || Sbjct 1564094 CACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613228238276160