Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq161 125 1e-23 >seq161 Length=5110746 Score = 125 bits (138), Expect = 1e-23 Identities = 290/431 (67%), Gaps = 7/431 (2%) Strand=Plus/Minus Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708 ||||||||| ||||||||||| |||| || || || ||||| | |||| ||||| Sbjct 1384669 CTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTT 1384610 Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768 | ||| || |||| | |||| || | || | | ||| || || || || Sbjct 1384609 CGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCCGAGGAGACGGTCGGCGACGAACTC 1384550 Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCCG 159827 |||||| | ||| | || | ||| ||||||| ||| | ||||| ||||| || Sbjct 1384549 GATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGCACGGG-AGCGCGTCGC 1384491 Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887 | | |||||| |||| || || || || ||| ||| ||| | || || || | | Sbjct 1384490 AGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCCGCACCCGCTCCTCGC 1384431 Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947 |||||| | | | | | | || ||||| || ||||||||||| || |||| Sbjct 1384430 TCGGCTTCCTCTTCAGCAGCGAGT---AGAGCAGGCAGGCGAAGTCGCAGTGGAGGCCCT 1384374 Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007 ||||||| ||||||| |||||| || | | |||| |||||||||| || ||| |||| Sbjct 1384373 CGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGA 1384314 Query 160008 GCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066 |||| || |||| |||| ||| ||| || ||||| ||||| ||| || || || Sbjct 1384313 GCCAGAAGATGG-CGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCG 1384255 Query 160067 ACGAGCCTCTC 160077 | ||| | ||| Sbjct 1384254 AGGAGGCGCTC 1384244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794793642930560