Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq161 125 1e-23
>seq161
Length=5110746
Score = 125 bits (138), Expect = 1e-23
Identities = 290/431 (67%), Gaps = 7/431 (2%)
Strand=Plus/Minus
Query 159649 CTTCTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTT 159708
||||||||| ||||||||||| |||| || || || ||||| | |||| |||||
Sbjct 1384669 CTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATCCAGTCGAAGGGGTT 1384610
Query 159709 CTTCACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTC 159768
| ||| || |||| | |||| || | || | | ||| || || || ||
Sbjct 1384609 CGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCCGAGGAGACGGTCGGCGACGAACTC 1384550
Query 159769 GATGTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGC-CTAACGGGGAGCGCTTCCG 159827
|||||| | ||| | || | ||| ||||||| ||| | ||||| ||||| ||
Sbjct 1384549 GATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGCACGGG-AGCGCGTCGC 1384491
Query 159828 ACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGCGAGACACGTTCGTACC 159887
| | |||||| |||| || || || || ||| ||| ||| | || || || | |
Sbjct 1384490 AGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATCCCCCGCACCCGCTCCTCGC 1384431
Query 159888 CCGGCTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCT 159947
|||||| | | | | | | || ||||| || ||||||||||| || ||||
Sbjct 1384430 TCGGCTTCCTCTTCAGCAGCGAGT---AGAGCAGGCAGGCGAAGTCGCAGTGGAGGCCCT 1384374
Query 159948 CGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTGA 160007
||||||| ||||||| |||||| || | | |||| |||||||||| || ||| ||||
Sbjct 1384373 CGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGA 1384314
Query 160008 GCCAAAAAATGGCCGCA-AAAGCACCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGCC 160066
|||| || |||| |||| ||| ||| || ||||| ||||| ||| || || ||
Sbjct 1384313 GCCAGAAGATGG-CGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCAGGCGAAGGCG 1384255
Query 160067 ACGAGCCTCTC 160077
| ||| | |||
Sbjct 1384254 AGGAGGCGCTC 1384244
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 794793642930560
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |