Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_013797.1
Length=108592
Score E
Sequences producing significant alignments: (Bits) Value
seq49 122 6e-23
seq652 95.1 8e-15
>seq49
Length=4798478
Score = 122 bits (134), Expect = 6e-23
Identities = 166/230 (72%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || | || |||||| ||||| || | ||| ||||| || || |||||||| ||
Sbjct 2870141 GCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCTGC 2870082
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| | | |||| || | |||||||| ||||||| | | ||||||||||| |||
Sbjct 2870081 CAGAGTCCTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGG 2870022
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTT--AATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| |||||||||||| |||||| ||| || |||| || ||||| | ||| ||
Sbjct 2870021 AATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTGTCGATA--GTGTCAGAGCTCTCA 2869964
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||||||| |||||||| || || | || || || ||||| |||||
Sbjct 2869963 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTGACAAAGATTTGCAT 2869914
Score = 109 bits (120), Expect = 4e-19
Identities = 163/229 (71%), Gaps = 2/229 (1%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || | || ||||| ||||| || | |||| ||||| || || || ||||| ||
Sbjct 2841085 GCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCCGC 2841026
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|||| | |||| || | ||||||||| ||||||| | | ||||||||||| |||
Sbjct 2841025 CAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGGGG 2840966
Query 39612 TACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCA 39670
| |||||| ||||| | | |||| | || ||| | | | ||||| | ||| || |
Sbjct 2840965 AATGCCTTCCTTGTC-CTGAATTTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAA 2840907
Query 39671 CGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
| |||||||| |||||||| || || | || || || || || |||||
Sbjct 2840906 CTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCAT 2840858
Score = 104 bits (114), Expect = 2e-17
Identities = 154/216 (71%), Gaps = 2/216 (1%)
Strand=Plus/Minus
Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564
||||| ||||| || | |||| || || || || || ||||| |||||| | ||
Sbjct 2847060 CGCAGAACCAAGTGAAGAGTGGACTCCTTCTGGATGTTGTAATCCGCCAAAGTCCTACCA 2847001
Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624
|| || | |||||||| ||||||| | | ||||||||||| ||| | |||||| |||
Sbjct 2847000 TCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGGGGAATGCCTTCCTTG 2846941
Query 39625 TCGCATATTTTTTGTTTAATCGTCG-CTACTGTGTCTGCGCTTTCCACGTCCAAAGTAAT 39683
|| | | |||||| || ||| | | | ||||| | ||| || || |||||||| ||
Sbjct 2846940 TC-CTGAATTTTTGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCAACTTCCAAAGTGAT 2846882
Query 39684 TGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|||||| || || | || || || || || |||||
Sbjct 2846881 TGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCAT 2846846
Score = 82.4 bits (90), Expect = 5e-11
Identities = 155/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 39493 CCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCC 39552
|| |||| |||||| || ||||| || | ||| ||| ||||| || || || || ||
Sbjct 2869912 CCTCCTCTCAAACGGAGGACCAAGTGAAGGGTGGATTCCTTTTGGATGTTGTAGTCCGCT 2869853
Query 39553 AAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGT 39612
| || |||| || | ||| || || ||||||| || |||||||| || | |||
Sbjct 2869852 AGTGTCCGGCCATCCTCGAGTTGCTTTCCAGCAAAAATCAACCGCTGCTGGTCTGGGGGA 2869793
Query 39613 ACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACG 39672
| ||||||||||| ||||| || | | | | || || | || |||||
Sbjct 2869792 ATCCCTTCTTTGTCCTGGATTTTGGCCTTCACATTGTCAATGGTATCGGAACTCTCCACC 2869733
Query 39673 TCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720
|| | |||||| || || || || | ||| || || ||||||||||||
Sbjct 2869732 TCAAGAGTAATGGTCTTGCCGGTGAGAGTCTTCACAAAGATCTGCATG 2869685
>seq652
Length=2384379
Score = 95.1 bits (104), Expect = 8e-15
Identities = 160/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Minus
Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551
||| || |||| ||| || ||||| |||| ||| ||||| || || |||||||||||
Sbjct 465741 GCCACCACGCAGACGAAGGACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCGGC 465682
Query 39552 CAAAACGCGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGG 39611
|| | | | || |||| ||| |||||| ||||||| | | |||||| || | ||
Sbjct 465681 CAGTGTCCTTCCGTCTTCCAGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGG 465622
Query 39612 TACGCCTTCTTTGTC--GCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669
| ||| || ||||| | || ||| | || |||| | ||||||| || |||
Sbjct 465621 GATGCCCTCCTTGTCCTGGATCTTTGCCTTCACATTGTCG--ATGGTGTCTGAACTCTCC 465564
Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719
|| |||| ||| || || || || || | ||| || || || ||||||||
Sbjct 465563 ACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTCTTGACAAAAATCTGCAT 465514
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 347215599766808
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |