Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq116 154 1e-31 seq24 143 2e-28 seq203 111 1e-18 seq18 95.1 9e-14 seq49 91.5 1e-12 seq46 89.7 4e-12 seq161 87.8 1e-11 >seq116 Length=10441785 Score = 154 bits (170), Expect = 1e-31 Identities = 530/814 (65%), Gaps = 22/814 (3%) Strand=Plus/Plus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||||| || || || | |||||| || || || |||||||| | || | Sbjct 2151278 GTCATGACACCACCGGCAGTCTCGAGACCAAGGGAGAGTGGGGTGACATCCAAAAGCAAG 2151337 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614 | || || | ||| |||| | |||| ||||| | || ||||||| |||||| || Sbjct 2151338 AGATCCTGCACTTTCTCATTGCCCTCACCACTCAAGA-TGGCAGCTTGAACAGCAGCGCC 2151396 Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 ||| ||||| || ||||| || |||| | || || |||| || |||||||| ||| Sbjct 2151397 ATAGGCAACGGCCTCATCTGGGTTAATGCTCTTGCAA--AGTTCCTTGCCATTGAAGAAA 2151454 Query 517673 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732 | ||||| || ||||| ||||| | | ||| |||||||| | ||| ||| Sbjct 2151455 TCCTGCAGAAGCTGCTGAACCTTGGGAATCCTGGTTGAACCTCCAACAAGGACAGCATCA 2151514 Query 517733 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 || || || | ||||||| || | |||| ||| || ||||| || || | || Sbjct 2151515 TGGACA-GTACTCTTATCCATCTTGGCATCCCTCAAACACTTCTCAACCGGCTCCATACA 2151573 Query 517792 CGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 517851 | || || | ||| || || |||||| | || | || | || | | Sbjct 2151574 CTTCCTGAAAAGGTCCATGTTGAGCTCCTCGAATCTGGCACGGGTGATGGTCGAGTAGAA 2151633 Query 517852 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911 |||||| || || |||| ||||||| |||||| || || || | | ||| || |||| Sbjct 2151634 ATCAATACCCTCATACAAGGAATCAATTTCAATGGTGGTCTGCGCAGTAGATGAGAGTGT 2151693 Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA 517971 | || || | ||| || | |||||| | || | | |||| | | | ||| | Sbjct 2151694 CCTCTTGGCCCTTTCGCAAGATGTCCTCAACCTCCTGAGGGCTCTAG--GGTTGCCGCTG 2151751 Query 517972 ATCTGTTTTATATTTT--CTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTAT 518027 || | || | || | |||||||| |||| ||| | ||| | || | | || | Sbjct 2151752 ATGTCCTTCTTGTTCTTCCTCTTGAACTCTTGGACAAA--ATGGTTGACCATTCTGTTGT 2151809 Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087 |||| || || || || | | |||| || | || || |||| | || | || | Sbjct 2151810 CAAAGTCCTCTCCACCAAGGTGGGTATCACCAGCGGTGGCCTTTACCTCAAAGATACCCT 2151869 Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147 | |||| | | |||| |||||| || |||||||| | ||||| || | |||| Sbjct 2151870 CCTCAATGGTGAGGAGAGAGACATCAAATGTACCACCACCGAGGTCAAAGATCAAGACAT 2151929 Query 518148 TCATTTCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201 || | || | | ||| ||| || ||||||||||| |||| |||||| || || | Sbjct 2151930 TCTTCTCGCCGACACTGGTTGCTTTCTTGTCAAGACCATAAGCAATAGCAGCTGCTGTAG 2151989 Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261 | |||||||| || | || ||||| || || || || || ||||| || ||||| | Sbjct 2151990 GCTCATTAATGATACGCATCACATTTAGGCCTGCGATGACACCAGCATCCTTGGTGGCCT 2152049 Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 | | || ||||| || || || || || ||||| Sbjct 2152050 GACGCTGGGAATCATTGAAGTACGCTGGGACAGT 2152083 >seq24 Length=10012559 Score = 143 bits (158), Expect = 2e-28 Identities = 608/939 (65%), Gaps = 40/939 (4%) Strand=Plus/Plus Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450 |||||||| ||| |||||| ||| ||| ||| ||||| || || || | || || Sbjct 6126202 TCACCCTCATAAACCTGGATAAGGACTCCAGGTTGGTTATCCGAGTAGGTGGAGAACAC- 6126260 Query 517451 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATAC 517505 ||| || ||| || ||||| |||||||| ||||| | ||||| | || Sbjct 6126261 CTGCTCCTTCTTAGTGGGGATTGTGGTGTTTCTTGGGATCAACACA----GTCATGACAC 6126316 Query 517506 CACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT--TG 517563 | || || ||||| | |||| |||||| || |||||||| | || ||||| | || Sbjct 6126317 CTCCAGCAGTTTCCAGACCAGAAGAAAGGGGGGTGACATCCAGCAG--CAATAGGTCCTG 6126374 Query 517564 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623 | || |||| | || | ||| || ||||||| ||| |||||||| || || Sbjct 6126375 GACCTTCTCATTGCCCTCGCCGCTCAAAATTGCAGCTTGAACAGCCGCACCATAAGCCAC 6126434 Query 517624 AGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAG 517680 |||||||||||| || | | || || || | || || |||||||||| || || Sbjct 6126435 AGCTTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTCCCGTTGAAAAAATCCTGCAAT 6126492 Query 517681 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 517740 | | || ||||| || || | || || || || || | |||| ||||| | | Sbjct 6126493 A-GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGAACAACATCATGGATA-G 6126550 Query 517741 TGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAA 517799 || | || |||| || | |||| | | || ||||| || || | || | ||| | Sbjct 6126551 TGCTCTTGTCCATCTTAGCATCCCTGAGACACTTCTCAACTGGCTCCATACACTTTCTGA 6126610 Query 517800 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATT 517858 | | ||| || || || ||| | || | ||| | || | | || || || | Sbjct 6126611 AGAGGTCCATGTTGAGCTCCTCAAATCTGGCACGAGTGATTGT-AGAGTAGAAATCCACA 6126669 Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGT 517915 || || ||||||| |||| ||| || || || || ||||||||| || || | | Sbjct 6126670 CCCTCATACAAAGAGTCAATTTCGATTGTCGTCTGGGCAGTCGAAGA-GAGCGTTCTC-- 6126726 Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAAT 517973 || || | |||||| | |||||| | ||| | || || | | |||| | | | | Sbjct 6126727 TTCGCCCTTTCACAAGATGTCCTCAATCTCCTTAGAGCCCTCG--GATTTCCACTGATGT 6126784 Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033 | | || | || |||||||| |||| ||| | | || | | |||||||| | Sbjct 6126785 CCTTCTTGTGCTTCCTCTTGAACTCTTGCACAAAGTGGTTCACCATTCTGTTATCAAAGT 6126844 Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093 | || || || | | ||| | ||| | || || | || | || | || || || | Sbjct 6126845 CCTCCCCACCAAGATGAGTGTCTCCGGCTGTTGCCTTCACCTCAAAGATACCCTCCTCGA 6126904 Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153 | | || | |||||| || || ||||| | ||| ||||| | |||||| | | Sbjct 6126905 TGGTTAGGAGGGACACATCAAAAGTACCGCCACCAAGATCGAAAATCAACACATTCTTCT 6126964 Query 518154 CTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207 || | ||| ||||||||||||||||| |||| || ||||||||||| |||| Sbjct 6126965 CTCCAACACTGGTGGCCTTTTTATCAAGACCATAAGCAATGGCCGCAGCAGTTGGCTCAT 6127024 Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267 |||| || | || ||||| || || ||||| || ||||| || ||||| || || | Sbjct 6127025 TAATGATACGCATGACATTGAGCCCTGCAATGACACCAGCATCCTTGGTGGCCTGCCTCT 6127084 Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306 | || || || || || ||||| || || | ||| |||| Sbjct 6127085 GGGAGTCATTGAAGTAGGCAGGGACGGTGACAACTGCAT 6127123 >seq203 Length=8626763 Score = 111 bits (122), Expect = 1e-18 Identities = 528/824 (64%), Gaps = 24/824 (3%) Strand=Plus/Plus Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555 ||||| | |||||||| || || | ||| || ||||| |||||||| | | || Sbjct 1982265 GTCATCACGCCACCTGCAGTCTCAATACCGAGGCTCAGAGGCGTGACATCGAGCAAGAGC 1982324 Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614 | | || | ||| || | || |||| ||||| | || ||||| | ||||| || Sbjct 1982325 AAGTCCTGCACTTTCTCGTTCCCTTCACCACTCAAGATT-GCAGCTTGCACTGCAGCCCC 1982383 Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672 |||||||||||| |||||||| |||| | || || | | || |||||||| || Sbjct 1982384 ATATGCAACAGCCTCATCAGGGTTAATGCTCTTGCA--CAACTCCTTTCCATTGAAGAAG 1982441 Query 517673 T-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 517731 | || ||| ||||| || || || || | | || || ||||| | |||| || Sbjct 1982442 TCCTGCAAG-AGTTGCTGAACTTTCGGGATCCTCGTCGACCCGCCAACAAGAACAACATC 1982500 Query 517732 ATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791 ||| ||||| ||||| | || || ||| | | ||| || ||||| || | || Sbjct 1982501 ATGAACCTGACTCTTATCGATCTTCGAGTCCCTCAGACATTTCTCCACGGGCTCCATACA 1982560 Query 517792 CGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 517849 | |||||||| || || ||| || |||||| | || ||||| | || | | Sbjct 1982561 CTTCCTAAACAAATCCATGTTCAA--CTCCTCGAATCTCGCCCTAGTGATTGTAGCGTAG 1982618 Query 517850 TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGT 517909 ||||||| ||||| | | || || | || ||||| || || |||| ||||| || Sbjct 1982619 AAATCAATACCTTCATAAAGCGAGTCGATCTCGATCGTCGTCTGGGTCGTCGAAGACAGA 1982678 Query 517910 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTC 517969 | | || || | |||||| || ||||| | |||| | || |||| ||| | Sbjct 1982679 GTCCTCTTGGCCCTTTCACAAGCGGTCCTCAACCTTCTCAGAGCCCTTGC--ATTCCCGC 1982736 Query 517970 AAA--TCTGTTTTATATTTTCTCTTGAAAT-CTTCAACACACCATGTTACAAGACGATTA 518026 || || | || | || |||||||| | || || | | || | || || | || Sbjct 1982737 TAATGTCCTTCTTGTGCTTCCTCTTGAACTCCTGCACGAAATGAT-TCACGAGCCTGTTG 1982795 Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 || ||||| |||||||| || | || | || | ||| || | |||| ||| | || Sbjct 1982796 TCGAAATCCTCACCTCCTAAATGCGTGTCACCGGCCGTCGCCTTCACTTCGAAGATGCCC 1982855 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || |||| | ||| || | ||||| || || || || | || || || || || Sbjct 1982856 TCGTCAATCGTCAACAGCGAGACATCGAAAGTCCCGCCGCCGAGGTCGAATATGAGGACG 1982915 Query 518147 TTCATTTCTTTG-TCTTGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200 ||| | || | || | | || || || || || ||||| | || || || || Sbjct 1982916 TTCTTCTCGCCGATCCTCGACGCCTTCTTGTCGAGCCCGTACGCGATCGCCGCCGCGGTC 1982975 Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260 ||||| || || || |||| ||||| || || ||||| || || || || || || Sbjct 1982976 GGTTCGTTGATGATCCTCATCACATTGAGCCCGGCAATCGCGCCGGCGTCCTTCGTCGCC 1983035 Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || | || || || || || || || || || || || || || Sbjct 1983036 TGCCGCTGCGAGTCATTGAAGTACGCGGGGACGGTGATCACCGC 1983079 >seq18 Length=12238210 Score = 95.1 bits (104), Expect = 9e-14 Identities = 156/220 (71%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235 |||||| | || |||||| ||||| || || || || ||||| |||| ||| || || Sbjct 920045 ACCATATGAAAGAGCAGCTGCAGTGGGCTCGTTGATGATTCTTTCTACATCAAGCCCTGC 919986 Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295 || || || |||||||| || || ||||| || | ||| || || || || |||||||| Sbjct 919985 GATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGGGCATCATTGAAGTAGGCTGGAACAGT 919926 Query 518296 AATAACGGCATCAGTTACTT-CTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTAC 518354 ||||| || | | ||| |||| |||| |||||| || |||| | |||| || | Sbjct 919925 TATAACAGCTTTTGAAACTGACTTTCCCAA-ATAAGCCTCAGCAGTTTCTCTCATCTT-C 919868 Query 518355 TTAAA-ATCATTGATGAAATTTGTTCTGGGGAATATTGCT 518393 | || || | | |||||| |||||||||||||| Sbjct 919867 TGAAGGATGAAAGCACCAATTTGACTTGGGGAATATTGCT 919828 >seq49 Length=4798478 Score = 91.5 bits (100), Expect = 1e-12 Identities = 113/152 (74%), Gaps = 2/152 (1%) Strand=Plus/Minus Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224 || || |||| |||||| || | | |||||||| |||||||||||||| | | || Sbjct 895785 TTCTTTTCAAAACCATAAGCCAGTGATGCAGCAGTAGGTTCATTAATAATGCGGAGCACT 895726 Query 518225 T-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283 | |||| |||||||| | ||| ||||| || || || ||||| || ||||| || || Sbjct 895725 TCTAAG-CCAGCAATACGTCCAGCATCCTTTGTTGCAGTCCTTTGCGAGTCGTTGAAGTA 895667 Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTT 518315 ||||||||||| | || || | |||||||| Sbjct 895666 AGCAGGAACAGTGACCACAGCTTTAGTTACTT 895635 >seq46 Length=3638525 Score = 89.7 bits (98), Expect = 4e-12 Identities = 123/170 (72%), Gaps = 3/170 (2%) Strand=Plus/Minus Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176 || |||||||| | ||||||| ||| | |||| | || ||| || | |||| Sbjct 2090086 GTGCCACCACCGAGGTCAAAAACAAGGATATTCTTCTCACCACCTTTCTTGTC--CAAG- 2090030 Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236 || ||||||| ||||||||||| |||||||| |||||||| |||||| || |||||| Sbjct 2090029 CCGTACGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTAGCAACATTGAGTCCAGCA 2089970 Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286 || || || || || || ||||| || || | |||||| || || || Sbjct 2089969 ATAACACCAGCGTCCTTGGTAGCTTGCCTCTGGGCATCGTTGAAGTAGGC 2089920 >seq161 Length=5110746 Score = 87.8 bits (96), Expect = 1e-11 Identities = 98/131 (75%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303 || || | ||| || ||||||||||| |||||||| ||| | | || || | ||| ||| Sbjct 4993880 CCATAAGAAAGTGCAGCTGCAGTTGGCTCATTAATGATTCTCTGCACGTCAAGACCTGCA 4993939 Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363 ||| | ||| ||| ||||| |||||||| || ||||| || || ||||| || ||| Sbjct 4993940 ATTCTGCCAGCATCTTTGGTTGCCTGTCTCTGGGCATCATTGAAGTAAGCTGGAACCGTA 4993999 Query 322364 ATAACTGCTTT 322374 || || ||||| Sbjct 4994000 ATCACAGCTTT 4994010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3779017303057456