Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_014649.1
Length=1181549
Score E
Sequences producing significant alignments: (Bits) Value
seq116 154 1e-31
seq24 143 2e-28
seq203 111 1e-18
seq18 95.1 9e-14
seq49 91.5 1e-12
seq46 89.7 4e-12
seq161 87.8 1e-11
>seq116
Length=10441785
Score = 154 bits (170), Expect = 1e-31
Identities = 530/814 (65%), Gaps = 22/814 (3%)
Strand=Plus/Plus
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
||||| | |||||| || || || | |||||| || || || |||||||| | || |
Sbjct 2151278 GTCATGACACCACCGGCAGTCTCGAGACCAAGGGAGAGTGGGGTGACATCCAAAAGCAAG 2151337
Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614
| || || | ||| |||| | |||| ||||| | || ||||||| |||||| ||
Sbjct 2151338 AGATCCTGCACTTTCTCATTGCCCTCACCACTCAAGA-TGGCAGCTTGAACAGCAGCGCC 2151396
Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672
||| ||||| || ||||| || |||| | || || |||| || |||||||| |||
Sbjct 2151397 ATAGGCAACGGCCTCATCTGGGTTAATGCTCTTGCAA--AGTTCCTTGCCATTGAAGAAA 2151454
Query 517673 TTTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCA 517732
| ||||| || ||||| ||||| | | ||| |||||||| | ||| |||
Sbjct 2151455 TCCTGCAGAAGCTGCTGAACCTTGGGAATCCTGGTTGAACCTCCAACAAGGACAGCATCA 2151514
Query 517733 TGCACCTGTGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791
|| || || | ||||||| || | |||| ||| || ||||| || || | ||
Sbjct 2151515 TGGACA-GTACTCTTATCCATCTTGGCATCCCTCAAACACTTCTCAACCGGCTCCATACA 2151573
Query 517792 CGCTCTAAACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATA 517851
| || || | ||| || || |||||| | || | || | || | |
Sbjct 2151574 CTTCCTGAAAAGGTCCATGTTGAGCTCCTCGAATCTGGCACGGGTGATGGTCGAGTAGAA 2151633
Query 517852 ATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGC 517911
|||||| || || |||| ||||||| |||||| || || || | | ||| || ||||
Sbjct 2151634 ATCAATACCCTCATACAAGGAATCAATTTCAATGGTGGTCTGCGCAGTAGATGAGAGTGT 2151693
Query 517912 ACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAA 517971
| || || | ||| || | |||||| | || | | |||| | | | ||| |
Sbjct 2151694 CCTCTTGGCCCTTTCGCAAGATGTCCTCAACCTCCTGAGGGCTCTAG--GGTTGCCGCTG 2151751
Query 517972 ATCTGTTTTATATTTT--CTCTTGAAATCTTCAACACACCATGTT--ACAAGACGATTAT 518027
|| | || | || | |||||||| |||| ||| | ||| | || | | || |
Sbjct 2151752 ATGTCCTTCTTGTTCTTCCTCTTGAACTCTTGGACAAA--ATGGTTGACCATTCTGTTGT 2151809
Query 518028 CAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCAT 518087
|||| || || || || | | |||| || | || || |||| | || | || |
Sbjct 2151810 CAAAGTCCTCTCCACCAAGGTGGGTATCACCAGCGGTGGCCTTTACCTCAAAGATACCCT 2151869
Query 518088 CTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACAT 518147
| |||| | | |||| |||||| || |||||||| | ||||| || | ||||
Sbjct 2151870 CCTCAATGGTGAGGAGAGAGACATCAAATGTACCACCACCGAGGTCAAAGATCAAGACAT 2151929
Query 518148 TCATTTCTTTGTC-----TTGGTTT-TTATCAAGACCATACGCAAAAGCAGCAGCAGTTG 518201
|| | || | | ||| ||| || ||||||||||| |||| |||||| || || |
Sbjct 2151930 TCTTCTCGCCGACACTGGTTGCTTTCTTGTCAAGACCATAAGCAATAGCAGCTGCTGTAG 2151989
Query 518202 GTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTT 518261
| |||||||| || | || ||||| || || || || || ||||| || ||||| |
Sbjct 2151990 GCTCATTAATGATACGCATCACATTTAGGCCTGCGATGACACCAGCATCCTTGGTGGCCT 2152049
Query 518262 GTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295
| | || ||||| || || || || || |||||
Sbjct 2152050 GACGCTGGGAATCATTGAAGTACGCTGGGACAGT 2152083
>seq24
Length=10012559
Score = 143 bits (158), Expect = 2e-28
Identities = 608/939 (65%), Gaps = 40/939 (4%)
Strand=Plus/Plus
Query 517391 TCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACT 517450
|||||||| ||| |||||| ||| ||| ||| ||||| || || || | || ||
Sbjct 6126202 TCACCCTCATAAACCTGGATAAGGACTCCAGGTTGGTTATCCGAGTAGGTGGAGAACAC- 6126260
Query 517451 CTGGATTTT-TTACAAGGAATTGTTGTGTTTCT----ATCAATAATATTGGTCATAATAC 517505
||| || ||| || ||||| |||||||| ||||| | ||||| | ||
Sbjct 6126261 CTGCTCCTTCTTAGTGGGGATTGTGGTGTTTCTTGGGATCAACACA----GTCATGACAC 6126316
Query 517506 CACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT--TG 517563
| || || ||||| | |||| |||||| || |||||||| | || ||||| | ||
Sbjct 6126317 CTCCAGCAGTTTCCAGACCAGAAGAAAGGGGGGTGACATCCAGCAG--CAATAGGTCCTG 6126374
Query 517564 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 517623
| || |||| | || | ||| || ||||||| ||| |||||||| || ||
Sbjct 6126375 GACCTTCTCATTGCCCTCGCCGCTCAAAATTGCAGCTTGAACAGCCGCACCATAAGCCAC 6126434
Query 517624 AGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAATT-TGAAAG 517680
|||||||||||| || | | || || || | || || |||||||||| || ||
Sbjct 6126435 AGCTTCATCAGGGTTGATGCTCTTGCAG--AGCTCCTTCCCGTTGAAAAAATCCTGCAAT 6126492
Query 517681 AAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTG 517740
| | || ||||| || || | || || || || || | |||| ||||| | |
Sbjct 6126493 A-GCTGCTGCACCTTGGGGATCCTAGTGGAACCACCCACAAGAACAACATCATGGATA-G 6126550
Query 517741 TGAT-TTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCCGCTCTAA 517799
|| | || |||| || | |||| | | || ||||| || || | || | ||| |
Sbjct 6126551 TGCTCTTGTCCATCTTAGCATCCCTGAGACACTTCTCAACTGGCTCCATACACTTTCTGA 6126610
Query 517800 ACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAA-TCAATT 517858
| | ||| || || || ||| | || | ||| | || | | || || || |
Sbjct 6126611 AGAGGTCCATGTTGAGCTCCTCAAATCTGGCACGAGTGATTGT-AGAGTAGAAATCCACA 6126669
Query 517859 CCTTCGAACAAAGAATCAACTTCAATCGTAGTTTG---AGTCGAAGAAGATAGTGCACGT 517915
|| || ||||||| |||| ||| || || || || ||||||||| || || | |
Sbjct 6126670 CCCTCATACAAAGAGTCAATTTCGATTGTCGTCTGGGCAGTCGAAGA-GAGCGTTCTC-- 6126726
Query 517916 TTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTG--ATTCAAAT 517973
|| || | |||||| | |||||| | ||| | || || | | |||| | | | |
Sbjct 6126727 TTCGCCCTTTCACAAGATGTCCTCAATCTCCTTAGAGCCCTCG--GATTTCCACTGATGT 6126784
Query 517974 CTGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAAT 518033
| | || | || |||||||| |||| ||| | | || | | |||||||| |
Sbjct 6126785 CCTTCTTGTGCTTCCTCTTGAACTCTTGCACAAAGTGGTTCACCATTCTGTTATCAAAGT 6126844
Query 518034 CTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAA 518093
| || || || | | ||| | ||| | || || | || | || | || || || |
Sbjct 6126845 CCTCCCCACCAAGATGAGTGTCTCCGGCTGTTGCCTTCACCTCAAAGATACCCTCCTCGA 6126904
Query 518094 GAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTT 518153
| | || | |||||| || || ||||| | ||| ||||| | |||||| | |
Sbjct 6126905 TGGTTAGGAGGGACACATCAAAAGTACCGCCACCAAGATCGAAAATCAACACATTCTTCT 6126964
Query 518154 CTTTGTCT----TGG--TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCAT 518207
|| | ||| ||||||||||||||||| |||| || ||||||||||| ||||
Sbjct 6126965 CTCCAACACTGGTGGCCTTTTTATCAAGACCATAAGCAATGGCCGCAGCAGTTGGCTCAT 6127024
Query 518208 TAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTT 518267
|||| || | || ||||| || || ||||| || ||||| || ||||| || || |
Sbjct 6127025 TAATGATACGCATGACATTGAGCCCTGCAATGACACCAGCATCCTTGGTGGCCTGCCTCT 6127084
Query 518268 GTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCAT 518306
| || || || || || ||||| || || | ||| ||||
Sbjct 6127085 GGGAGTCATTGAAGTAGGCAGGGACGGTGACAACTGCAT 6127123
>seq203
Length=8626763
Score = 111 bits (122), Expect = 1e-18
Identities = 528/824 (64%), Gaps = 24/824 (3%)
Strand=Plus/Plus
Query 517496 GTCATAATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACA 517555
||||| | |||||||| || || | ||| || ||||| |||||||| | | ||
Sbjct 1982265 GTCATCACGCCACCTGCAGTCTCAATACCGAGGCTCAGAGGCGTGACATCGAGCAAGAGC 1982324
Query 517556 ATATTTTGAAGTTTTTCATCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACC 517614
| | || | ||| || | || |||| ||||| | || ||||| | ||||| ||
Sbjct 1982325 AAGTCCTGCACTTTCTCGTTCCCTTCACCACTCAAGATT-GCAGCTTGCACTGCAGCCCC 1982383
Query 517615 ATATGCAACAGCTTCATCAGGATTAA--CAGTTTCATTTAGTTTTTTACCATTGAAAAAA 517672
|||||||||||| |||||||| |||| | || || | | || |||||||| ||
Sbjct 1982384 ATATGCAACAGCCTCATCAGGGTTAATGCTCTTGCA--CAACTCCTTTCCATTGAAGAAG 1982441
Query 517673 T-TTGAAAGAAGTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTC 517731
| || ||| ||||| || || || || | | || || ||||| | |||| ||
Sbjct 1982442 TCCTGCAAG-AGTTGCTGAACTTTCGGGATCCTCGTCGACCCGCCAACAAGAACAACATC 1982500
Query 517732 ATGCACCTGTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACC 517791
||| ||||| ||||| | || || ||| | | ||| || ||||| || | ||
Sbjct 1982501 ATGAACCTGACTCTTATCGATCTTCGAGTCCCTCAGACATTTCTCCACGGGCTCCATACA 1982560
Query 517792 CGCTCTAAACAAGTC--TGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTA 517849
| |||||||| || || ||| || |||||| | || ||||| | || | |
Sbjct 1982561 CTTCCTAAACAAATCCATGTTCAA--CTCCTCGAATCTCGCCCTAGTGATTGTAGCGTAG 1982618
Query 517850 TAATCAATTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGT 517909
||||||| ||||| | | || || | || ||||| || || |||| ||||| ||
Sbjct 1982619 AAATCAATACCTTCATAAAGCGAGTCGATCTCGATCGTCGTCTGGGTCGTCGAAGACAGA 1982678
Query 517910 GCACGTTTAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTC 517969
| | || || | |||||| || ||||| | |||| | || |||| ||| |
Sbjct 1982679 GTCCTCTTGGCCCTTTCACAAGCGGTCCTCAACCTTCTCAGAGCCCTTGC--ATTCCCGC 1982736
Query 517970 AAA--TCTGTTTTATATTTTCTCTTGAAAT-CTTCAACACACCATGTTACAAGACGATTA 518026
|| || | || | || |||||||| | || || | | || | || || | ||
Sbjct 1982737 TAATGTCCTTCTTGTGCTTCCTCTTGAACTCCTGCACGAAATGAT-TCACGAGCCTGTTG 1982795
Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086
|| ||||| |||||||| || | || | || | ||| || | |||| ||| | ||
Sbjct 1982796 TCGAAATCCTCACCTCCTAAATGCGTGTCACCGGCCGTCGCCTTCACTTCGAAGATGCCC 1982855
Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146
|| |||| | ||| || | ||||| || || || || | || || || || ||
Sbjct 1982856 TCGTCAATCGTCAACAGCGAGACATCGAAAGTCCCGCCGCCGAGGTCGAATATGAGGACG 1982915
Query 518147 TTCATTTCTTTG-TCTTGG-----TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTT 518200
||| | || | || | | || || || || || ||||| | || || || ||
Sbjct 1982916 TTCTTCTCGCCGATCCTCGACGCCTTCTTGTCGAGCCCGTACGCGATCGCCGCCGCGGTC 1982975
Query 518201 GGTTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCT 518260
||||| || || || |||| ||||| || || ||||| || || || || || ||
Sbjct 1982976 GGTTCGTTGATGATCCTCATCACATTGAGCCCGGCAATCGCGCCGGCGTCCTTCGTCGCC 1983035
Query 518261 TGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304
|| | || || || || || || || || || || || || ||
Sbjct 1983036 TGCCGCTGCGAGTCATTGAAGTACGCGGGGACGGTGATCACCGC 1983079
>seq18
Length=12238210
Score = 95.1 bits (104), Expect = 9e-14
Identities = 156/220 (71%), Gaps = 4/220 (2%)
Strand=Plus/Minus
Query 518176 ACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGC 518235
|||||| | || |||||| ||||| || || || || ||||| |||| ||| || ||
Sbjct 920045 ACCATATGAAAGAGCAGCTGCAGTGGGCTCGTTGATGATTCTTTCTACATCAAGCCCTGC 919986
Query 518236 AATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGT 518295
|| || || |||||||| || || ||||| || | ||| || || || || ||||||||
Sbjct 919985 GATCCTCCCAGCATCTTTTGTTGCCTGTCTCTGGGCATCATTGAAGTAGGCTGGAACAGT 919926
Query 518296 AATAACGGCATCAGTTACTT-CTTTACCAATATAAGCGCTTGCCGTTTGTTTCATTTTAC 518354
||||| || | | ||| |||| |||| |||||| || |||| | |||| || |
Sbjct 919925 TATAACAGCTTTTGAAACTGACTTTCCCAA-ATAAGCCTCAGCAGTTTCTCTCATCTT-C 919868
Query 518355 TTAAA-ATCATTGATGAAATTTGTTCTGGGGAATATTGCT 518393
| || || | | |||||| ||||||||||||||
Sbjct 919867 TGAAGGATGAAAGCACCAATTTGACTTGGGGAATATTGCT 919828
>seq49
Length=4798478
Score = 91.5 bits (100), Expect = 1e-12
Identities = 113/152 (74%), Gaps = 2/152 (1%)
Strand=Plus/Minus
Query 518165 TTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACA 518224
|| || |||| |||||| || | | |||||||| |||||||||||||| | | ||
Sbjct 895785 TTCTTTTCAAAACCATAAGCCAGTGATGCAGCAGTAGGTTCATTAATAATGCGGAGCACT 895726
Query 518225 T-TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATA 518283
| |||| |||||||| | ||| ||||| || || || ||||| || ||||| || ||
Sbjct 895725 TCTAAG-CCAGCAATACGTCCAGCATCCTTTGTTGCAGTCCTTTGCGAGTCGTTGAAGTA 895667
Query 518284 TGCAGGAACAGTAATAACGGCATCAGTTACTT 518315
||||||||||| | || || | ||||||||
Sbjct 895666 AGCAGGAACAGTGACCACAGCTTTAGTTACTT 895635
>seq46
Length=3638525
Score = 89.7 bits (98), Expect = 4e-12
Identities = 123/170 (72%), Gaps = 3/170 (2%)
Strand=Plus/Minus
Query 518117 GTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGTTTTTATCAAGA 518176
|| |||||||| | ||||||| ||| | |||| | || ||| || | ||||
Sbjct 2090086 GTGCCACCACCGAGGTCAAAAACAAGGATATTCTTCTCACCACCTTTCTTGTC--CAAG- 2090030
Query 518177 CCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACATTAAGACCAGCA 518236
|| ||||||| ||||||||||| |||||||| |||||||| |||||| || ||||||
Sbjct 2090029 CCGTACGCAATGGCAGCAGCAGTGGGTTCATTGATAATTCTAGCAACATTGAGTCCAGCA 2089970
Query 518237 ATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATGC 518286
|| || || || || || ||||| || || | |||||| || || ||
Sbjct 2089969 ATAACACCAGCGTCCTTGGTAGCTTGCCTCTGGGCATCGTTGAAGTAGGC 2089920
>seq161
Length=5110746
Score = 87.8 bits (96), Expect = 1e-11
Identities = 98/131 (75%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 322244 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 322303
|| || | ||| || ||||||||||| |||||||| ||| | | || || | ||| |||
Sbjct 4993880 CCATAAGAAAGTGCAGCTGCAGTTGGCTCATTAATGATTCTCTGCACGTCAAGACCTGCA 4993939
Query 322304 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 322363
||| | ||| ||| ||||| |||||||| || ||||| || || ||||| || |||
Sbjct 4993940 ATTCTGCCAGCATCTTTGGTTGCCTGTCTCTGGGCATCATTGAAGTAAGCTGGAACCGTA 4993999
Query 322364 ATAACTGCTTT 322374
|| || |||||
Sbjct 4994000 ATCACAGCTTT 4994010
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 3779017303057456
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