Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq161 136 5e-27 seq109 118 1e-21 seq49 118 1e-21 seq24 89.7 6e-13 >seq161 Length=5110746 Score = 136 bits (150), Expect = 5e-27 Identities = 120/150 (80%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 ||||| || ||||| ||| |||| || || || || ||||| ||||||||||| || Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 |||||||| || | |||||||||||||| || |||||||| || ||| |||||| ||| Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354 Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 ||||| ||||| || |||||||| |||||| Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCAC 1384384 >seq109 Length=8785251 Score = 118 bits (130), Expect = 1e-21 Identities = 302/449 (67%), Gaps = 18/449 (4%) Strand=Plus/Minus Query 15933 CGATTCGTTGCGGCGATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTG 15990 || || ||||| || | |||| ||||| || ||| || ||||||||||||| |||| Sbjct 6755119 CGGTTAGTTGCCGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 6755062 Query 15991 TCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 16048 |||| ||||| |||| || || |||| ||||||||| || | | | | |||| | Sbjct 6755061 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 6755004 Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GC 16107 | ||| ||||||||||||||| ||||||| ||||| ||||| || ||| || Sbjct 6755003 TCTCTGCCGTCCCACGGCATCAATTTCATCAACAAAGACAATGCAGGGAGCATTCTCTTT 6754944 Query 16108 GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAA 16167 | | ||| ||| ||||| || || | || || |||||||| |||||||| || | Sbjct 6754943 GGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACCAACGAACATCTCAACGA 6754885 Query 16168 AGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCG 16226 | | | | ||| || | || || || ||| | |||||| ||||| || ||| Sbjct 6754884 ACTCAGAACCTGAA-ATGGAGAAAAAAGGAACACCTGCTTCACCAGCAATTGCCTTGGCA 6754826 Query 16227 AGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG 16286 || || || || || || ||||| ||| | || ||| |||| || || || Sbjct 6754825 AGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCC 6754766 Query 16287 CCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCA 16343 ||| | || | |||||||||| ||| ||||| ||||| | ||||| || || Sbjct 6754765 CCAACTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCAC---CACTTCCATGAAGTCC 6754709 Query 16344 TCTTTGGCGGCGTCAATCCCCTCAACATC 16372 | ||||| | |||| || ||||||| Sbjct 6754708 TGCTTGGCCTCATCAACACCAGCAACATC 6754680 >seq49 Length=4798478 Score = 118 bits (130), Expect = 1e-21 Identities = 276/409 (67%), Gaps = 8/409 (2%) Strand=Plus/Plus Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033 ||||||||||||||| ||||| ||||| || |||||||| || | ||||||||| || Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913 Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093 | |||||| | | ||| | ||||| ||||||||||||||||| || || ||||| Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973 Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149 || || |||| | || || ||||| | |||| || || |||| || || || | Sbjct 1563974 AGG-TGCTTTT-GACTTCGCCTTCTCAAACAAGTCCC-TA-ACTCTTGAAGCACCGACGC 1564029 Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209 | ||||||| ||||||||| | | || | ||| || ||| || ||| || |||| Sbjct 1564030 CCACAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCAC 1564089 Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269 | || | || | || | ||| ||||| || || || || || | || || || Sbjct 1564090 CAGCCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGGAGGGCCGACAAGAAGACAAC 1564149 Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329 || || || || || || | ||| | ||||| | ||| | ||||| || | Sbjct 1564150 CTTTGGGGATTTTAGCCCCCAGAGCGGTGTACTTATCAGGGTTCTTCAAGAAATCAACCA 1564209 Query 16330 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378 ||||| |||||| |||||| ||| ||| | ||||||| ||| Sbjct 1564210 CCTCTTGCAATTCCAATTTGGCTTGATCAGCCCCAGCCACATCGGCAAA 1564258 >seq24 Length=10012559 Score = 89.7 bits (98), Expect = 6e-13 Identities = 251/371 (68%), Gaps = 16/371 (4%) Strand=Plus/Minus Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946 |||||| | ||||| || || | || ||| ||||| || |||||||| | || Sbjct 7389912 ATCAAACCTTCCTGGCCGGAGCAAGGCAGAATCGAGGATTTCGGGACGATTCGTCACCGC 7389853 Query 15947 GATGACAA-CAATAC-CTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004 |||||||| || | | ||||| | | ||||||||||||||| || | | ||| || Sbjct 7389852 GATGACAATCACTCCACTGTTCCC--ACTAAAACCATCCATCTCAGTGAGCAACTGATTC 7389795 Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062 | ||||| || | |||||||| || | | | | |||| | | ||| | || | Sbjct 7389794 AATGTTTGCTCTCTCTCATCATTTCCT--CCTCCAATGCCAGTCCCTCTCTGCCTCCCAA 7389737 Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAA 16120 | ||||||||||||||||||||||| | ||| || || ||||| || || | || Sbjct 7389736 CAGCATCAATCTCATCAATGAAGACCAAGCAAGG-CGA-ATTCGCCTTCGCCTTGTTGAA 7389679 Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180 || || || || | | ||||| || |||||||||||||| | || | || ||| Sbjct 7389678 AAGGTCACGCACCCTCGAAGCGCCTACGCCAACAAACATCTCAATGAACTCTGACCCGG- 7389620 Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT-GGCTCGGGCGAGAAGAGTCTTA 16238 ||| | | ||| ||||| || ||| || ||||| | || || | | ||| ||||| Sbjct 7389619 ACAGCGAAAAGAAAGGGACCCCAGCTTCTCCTGCAATCGCCTTGGCCAACAAG-GTCTTC 7389561 Query 16239 CCCGTACCTGG 16249 || || || || Sbjct 7389560 CCTGTCCCCGG 7389550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620460148430720