Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_014766.1
Length=194022
Score E
Sequences producing significant alignments: (Bits) Value
seq161 136 5e-27
seq109 118 1e-21
seq49 118 1e-21
seq24 89.7 6e-13
>seq161
Length=5110746
Score = 136 bits (150), Expect = 5e-27
Identities = 120/150 (80%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230
||||| || ||||| ||| |||| || || || || ||||| ||||||||||| ||
Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294
Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290
|||||||| || | |||||||||||||| || |||||||| || ||| |||||| |||
Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354
Query 102291 GAGCTTATCTCTCGTGACGAGGGACTCCAC 102320
||||| ||||| || |||||||| ||||||
Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCAC 1384384
>seq109
Length=8785251
Score = 118 bits (130), Expect = 1e-21
Identities = 302/449 (67%), Gaps = 18/449 (4%)
Strand=Plus/Minus
Query 15933 CGATTCGTTGCGGCGATGACAACAATACCTGT--TTCGTTATCAAAACCATCCATCTCTG 15990
|| || ||||| || | |||| ||||| || ||| || ||||||||||||| ||||
Sbjct 6755119 CGGTTAGTTGCCGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 6755062
Query 15991 TCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 16048
|||| ||||| |||| || || |||| ||||||||| || | | | | |||| |
Sbjct 6755061 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 6755004
Query 16049 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTC-GC 16107
| ||| ||||||||||||||| ||||||| ||||| ||||| || ||| ||
Sbjct 6755003 TCTCTGCCGTCCCACGGCATCAATTTCATCAACAAAGACAATGCAGGGAGCATTCTCTTT 6754944
Query 16108 GAGCGACTTCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAA 16167
| | ||| ||| ||||| || || | || || |||||||| |||||||| || |
Sbjct 6754943 GGCCTTCTTGAAA-AGATCACGAACTCTGGAAGCACCAACACCAACGAACATCTCAACGA 6754885
Query 16168 AGTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCG 16226
| | | | ||| || | || || || ||| | |||||| ||||| || |||
Sbjct 6754884 ACTCAGAACCTGAA-ATGGAGAAAAAAGGAACACCTGCTTCACCAGCAATTGCCTTGGCA 6754826
Query 16227 AGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCG 16286
|| || || || || || ||||| ||| | || ||| |||| || || ||
Sbjct 6754825 AGCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCC 6754766
Query 16287 CCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAATCTCTTCC---AATTCA 16343
||| | || | |||||||||| ||| ||||| ||||| | ||||| || ||
Sbjct 6754765 CCAACTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCAC---CACTTCCATGAAGTCC 6754709
Query 16344 TCTTTGGCGGCGTCAATCCCCTCAACATC 16372
| ||||| | |||| || |||||||
Sbjct 6754708 TGCTTGGCCTCATCAACACCAGCAACATC 6754680
>seq49
Length=4798478
Score = 118 bits (130), Expect = 1e-21
Identities = 276/409 (67%), Gaps = 8/409 (2%)
Strand=Plus/Plus
Query 15974 AAAACCATCCATCTCTGTCAAAAGCTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 16033
||||||||||||||| ||||| ||||| || |||||||| || | ||||||||| ||
Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913
Query 16034 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACGATGCA 16093
| |||||| | | ||| | ||||| ||||||||||||||||| || || |||||
Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973
Query 16094 TGGTTGATTTTCGCGAGCGACT--TCAAAGAGATCCCGTACACGCTTG--GCGCCCACAC 16149
|| || |||| | || || ||||| | |||| || || |||| || || || |
Sbjct 1563974 AGG-TGCTTTT-GACTTCGCCTTCTCAAACAAGTCCC-TA-ACTCTTGAAGCACCGACGC 1564029
Query 16150 CAACAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCAC 16209
| ||||||| ||||||||| | | || | ||| || ||| || ||| || ||||
Sbjct 1564030 CCACAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCAC 1564089
Query 16210 CCGCAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCAC 16269
| || | || | || | ||| ||||| || || || || || | || || ||
Sbjct 1564090 CAGCCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGGAGGGCCGACAAGAAGACAAC 1564149
Query 16270 CTCGTGGAATCTTGGCGCCACTTCCAAAGTATCTCTCAGGTTGCTTAAGAAAATCCACAA 16329
|| || || || || || | ||| | ||||| | ||| | ||||| || |
Sbjct 1564150 CTTTGGGGATTTTAGCCCCCAGAGCGGTGTACTTATCAGGGTTCTTCAAGAAATCAACCA 1564209
Query 16330 TCTCTTCCAATTCATCTTTGGCGGCGTCAATCCCCTCAACATCGGTAAA 16378
||||| |||||| |||||| ||| ||| | ||||||| |||
Sbjct 1564210 CCTCTTGCAATTCCAATTTGGCTTGATCAGCCCCAGCCACATCGGCAAA 1564258
>seq24
Length=10012559
Score = 89.7 bits (98), Expect = 6e-13
Identities = 251/371 (68%), Gaps = 16/371 (4%)
Strand=Plus/Minus
Query 15887 ATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCGGC 15946
|||||| | ||||| || || | || ||| ||||| || |||||||| | ||
Sbjct 7389912 ATCAAACCTTCCTGGCCGGAGCAAGGCAGAATCGAGGATTTCGGGACGATTCGTCACCGC 7389853
Query 15947 GATGACAA-CAATAC-CTGTTTCGTTATCAAAACCATCCATCTCTGTCAAAAGCTGGTTA 16004
|||||||| || | | ||||| | | ||||||||||||||| || | | ||| ||
Sbjct 7389852 GATGACAATCACTCCACTGTTCCC--ACTAAAACCATCCATCTCAGTGAGCAACTGATTC 7389795
Query 16005 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 16062
| ||||| || | |||||||| || | | | | |||| | | ||| | || |
Sbjct 7389794 AATGTTTGCTCTCTCTCATCATTTCCT--CCTCCAATGCCAGTCCCTCTCTGCCTCCCAA 7389737
Query 16063 CGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACT--TCAAA 16120
| ||||||||||||||||||||||| | ||| || || ||||| || || | ||
Sbjct 7389736 CAGCATCAATCTCATCAATGAAGACCAAGCAAGG-CGA-ATTCGCCTTCGCCTTGTTGAA 7389679
Query 16121 GAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA 16180
|| || || || | | ||||| || |||||||||||||| | || | || |||
Sbjct 7389678 AAGGTCACGCACCCTCGAAGCGCCTACGCCAACAAACATCTCAATGAACTCTGACCCGG- 7389620
Query 16181 ACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT-GGCTCGGGCGAGAAGAGTCTTA 16238
||| | | ||| ||||| || ||| || ||||| | || || | | ||| |||||
Sbjct 7389619 ACAGCGAAAAGAAAGGGACCCCAGCTTCTCCTGCAATCGCCTTGGCCAACAAG-GTCTTC 7389561
Query 16239 CCCGTACCTGG 16249
|| || || ||
Sbjct 7389560 CCTGTCCCCGG 7389550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 620460148430720
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |