Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq161 120 4e-22 >seq161 Length=5110746 Score = 120 bits (132), Expect = 4e-22 Identities = 154/210 (73%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 119508 TGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCT 119567 || || || || ||||| ||||||||||| || |||| || || |||||||| || Sbjct 1384383 TGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCCG 1384324 Query 119568 CTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAG 119627 | ||||| ||||| |||||||| || ||||| || || |||||||||||||| || ||| Sbjct 1384323 CGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCAG 1384264 Query 119628 GCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAGACTTGTCGAACCACTTGAGAGCCCA 119686 ||||| |||| || ||||| || || | ||| | ||||| ||| ||| ||||| Sbjct 1384263 GCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCG-GCGCCGTCGACCCAGCGGAGGGCCCA 1384205 Query 119687 GTTGGCCTTACGCTCTATGCAGGGGACAGT 119716 || ||||| || | | | |||||| || Sbjct 1384204 GTCCGCCTTGCGAGCGACGGCGGGGACGGT 1384175 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588708192612800