Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq109 129 7e-25 seq161 118 1e-21 seq49 114 2e-20 seq24 87.8 2e-12 >seq109 Length=8785251 Score = 129 bits (142), Expect = 7e-25 Identities = 302/448 (67%), Gaps = 16/448 (4%) Strand=Plus/Minus Query 9240 CGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTG 9297 || || || || || | |||| ||||| || ||| || ||||||||||||| |||| Sbjct 6755119 CGGTTAGTTGCCGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 6755062 Query 9298 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9355 |||| || || |||| || || |||| ||||||||| || | | | | |||| | Sbjct 6755061 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 6755004 Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415 | ||| ||||||||||||||| ||||||| |||||||| || || ||| || Sbjct 6755003 TCTCTGCCGTCCCACGGCATCAATTTCATCAACAAAGACAATGCAGGGAGCATTCTCTTT 6754944 Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475 ||| | | || ||||| ||||| || || || |||||||| |||||||| || || Sbjct 6754943 GGCCTTCTTGAAAAGATCACGAACTCTGGAAGCACCAACACCAACGAACATCTCAACGAA 6754884 Query 9476 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534 | | | ||| || | || || || ||| | |||||| ||||| || ||| | Sbjct 6754883 CTCAGAACCTGAA-ATGGAGAAAAAAGGAACACCTGCTTCACCAGCAATTGCCTTGGCAA 6754825 Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC 9594 | || || || || || ||||| ||| | || ||| ||||| || || || | Sbjct 6754824 GCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCCC 6754765 Query 9595 CACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCAT 9651 || | || | |||||||||| ||| ||||| ||||| | ||||| || || | Sbjct 6754764 CAACTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCAC---CACTTCCATGAAGTCCT 6754708 Query 9652 CTTTGGCGGCGTCAATCCCCTCAACATC 9679 ||||| | |||| || ||||||| Sbjct 6754707 GCTTGGCCTCATCAACACCAGCAACATC 6754680 >seq161 Length=5110746 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344 |||||| ||||| || ||||| || || || || |||||| || || |||||||| || Sbjct 1384384 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 1384325 Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404 |||||||| | ||| | || |||||||| |||||||||||||| ||||| || || Sbjct 1384324 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCA 1384265 Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434 || || || | ||||||||||||||||| Sbjct 1384264 GGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235 >seq49 Length=4798478 Score = 114 bits (126), Expect = 2e-20 Identities = 193/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Plus Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340 ||||||||||||||| ||||| || || || |||||||| || | ||||||||| || Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913 Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400 | |||||| | | ||| | ||||| ||||||||||||||||| || ||||| || Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973 Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459 || || |||| | || | ||||| | || | ||| ||| || || || || | Sbjct 1563974 AGG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCA 1564032 Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519 |||||| ||||||||| | | || | ||| || ||| || ||| || ||||| | Sbjct 1564033 CAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAG 1564092 Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556 | | || | || | ||| ||||| || || || || Sbjct 1564093 CCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129 >seq24 Length=10012559 Score = 87.8 bits (96), Expect = 2e-12 Identities = 251/373 (67%), Gaps = 20/373 (5%) Strand=Plus/Minus Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253 |||||| | ||||| || || | || ||| ||||| || ||||||||| | || Sbjct 7389912 ATCAAACCTTCCTGGCCGGAGCAAGGCAGAATCGAGGATTTCGGGACGATTCGTCACCGC 7389853 Query 9254 GATGACAA-CAATAC-CTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||||||| || | | ||||| | | ||||||||||||||| || | | || || Sbjct 7389852 GATGACAATCACTCCACTGTTCCC--ACTAAAACCATCCATCTCAGTGAGCAACTGATTC 7389795 Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369 | ||||| || | |||||||| || | | | | |||| | | ||| | || | Sbjct 7389794 AATGTTTGCTCTCTCTCATCATTTCCT--CCTCCAATGCCAGTCCCTCTCTGCCTCCCAA 7389737 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATT----TTCGCGGGCGATTTCA 9425 | ||||||||||||||||||||||| | || || ||| ||||| | || | Sbjct 7389736 CAGCATCAATCTCATCAATGAAGACCAAGCAAGGCGAATTCGCCTTCGC---CTTGTTGA 7389680 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || || || || ||||| ||||| || |||||||||||||| | || | || || Sbjct 7389679 AA-AGGTCACGCACCCTCGAAGCGCCTACGCCAACAAACATCTCAATGAACTCTGACCCG 7389621 Query 9486 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT-GGCTCGGGCGAGAAGAGTCT 9543 | ||| | | ||| ||||| || ||| || ||||| | || || | | ||| |||| Sbjct 7389620 G-ACAGCGAAAAGAAAGGGACCCCAGCTTCTCCTGCAATCGCCTTGGCCAACAAG-GTCT 7389563 Query 9544 TACCCGTACCTGG 9556 | || || || || Sbjct 7389562 TCCCTGTCCCCGG 7389550 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589712535730240