Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_014789.1
Length=184409
Score E
Sequences producing significant alignments: (Bits) Value
seq109 129 7e-25
seq161 118 1e-21
seq49 114 2e-20
seq24 87.8 2e-12
>seq109
Length=8785251
Score = 129 bits (142), Expect = 7e-25
Identities = 302/448 (67%), Gaps = 16/448 (4%)
Strand=Plus/Minus
Query 9240 CGATTCGTCGCGGCGATGACAACAATACCTGT--TTCATTATCAAAACCATCCATCTCTG 9297
|| || || || || | |||| ||||| || ||| || ||||||||||||| ||||
Sbjct 6755119 CGGTTAGTTGCCGCAACAACAATGATACCCGTATTTCCTT--CAAAACCATCCATTTCTG 6755062
Query 9298 TCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACT 9355
|||| || || |||| || || |||| ||||||||| || | | | | |||| |
Sbjct 6755061 TCAACAGCTGATTAAGGGTCTGCTCCCTTTCATCATTTCCT--CCTCCAATTCCAGTTCC 6755004
Query 9356 GCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCG 9415
| ||| ||||||||||||||| ||||||| |||||||| || || ||| ||
Sbjct 6755003 TCTCTGCCGTCCCACGGCATCAATTTCATCAACAAAGACAATGCAGGGAGCATTCTCTTT 6754944
Query 9416 GGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAA 9475
||| | | || ||||| ||||| || || || |||||||| |||||||| || ||
Sbjct 6754943 GGCCTTCTTGAAAAGATCACGAACTCTGGAAGCACCAACACCAACGAACATCTCAACGAA 6754884
Query 9476 GTTTGCGGCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGA 9534
| | | ||| || | || || || ||| | |||||| ||||| || ||| |
Sbjct 6754883 CTCAGAACCTGAA-ATGGAGAAAAAAGGAACACCTGCTTCACCAGCAATTGCCTTGGCAA 6754825
Query 9535 GAAGAGTCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC 9594
| || || || || || ||||| ||| | || ||| ||||| || || || |
Sbjct 6754824 GCAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCCC 6754765
Query 9595 CACTTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCC---AATTCAT 9651
|| | || | |||||||||| ||| ||||| ||||| | ||||| || || |
Sbjct 6754764 CAACTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCAC---CACTTCCATGAAGTCCT 6754708
Query 9652 CTTTGGCGGCGTCAATCCCCTCAACATC 9679
||||| | |||| || |||||||
Sbjct 6754707 GCTTGGCCTCATCAACACCAGCAACATC 6754680
>seq161
Length=5110746
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Minus
Query 117285 GTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACC 117344
|||||| ||||| || ||||| || || || || |||||| || || |||||||| ||
Sbjct 1384384 GTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCCCCGGCATGAGGCC 1384325
Query 117345 CCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACA 117404
|||||||| | ||| | || |||||||| |||||||||||||| ||||| || ||
Sbjct 1384324 GCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGATGCCCTCGACGCA 1384265
Query 117405 CGCAAACGCAAAAAGGCGCTCGGCGAAGGA 117434
|| || || | |||||||||||||||||
Sbjct 1384264 GGCGAAGGCGAGGAGGCGCTCGGCGAAGGA 1384235
>seq49
Length=4798478
Score = 114 bits (126), Expect = 2e-20
Identities = 193/277 (70%), Gaps = 2/277 (1%)
Strand=Plus/Plus
Query 9281 AAAACCATCCATCTCTGTCAAAAGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGG 9340
||||||||||||||| ||||| || || || |||||||| || | ||||||||| ||
Sbjct 1563854 AAAACCATCCATCTCAGTCAATAGCTGATTGATAGTTTGCTCTCTCTCATCATTCCCTCC 1563913
Query 9341 CATACCACCAGCACTGCGTTGCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACA 9400
| |||||| | | ||| | ||||| ||||||||||||||||| || ||||| ||
Sbjct 1563914 TCCAAGACCAGCTCCTCTCTGCCTCCCCACCGCATCAATCTCATCAATAAACACAATGCA 1563973
Query 9401 TGGTTGATTTTCGC-GGGCGATTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAA 9459
|| || |||| | || | ||||| | || | ||| ||| || || || || |
Sbjct 1563974 AGG-TGCTTTTGACTTCGCCTTCTCAAACAAGTCCCTAACTCTTGAAGCACCGACGCCCA 1564032
Query 9460 CAAACATCTCCACAAAGTTTGCGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCG 9519
|||||| ||||||||| | | || | ||| || ||| || ||| || ||||| |
Sbjct 1564033 CAAACAACTCCACAAACTCGGATGCCGCACACGAGAAGAATGGCACACCAGCCTCACCAG 1564092
Query 9520 CAATGGCTCGGGCGAGAAGAGTCTTACCCGTACCTGG 9556
| | || | || | ||| ||||| || || || ||
Sbjct 1564093 CCACCGCCCTTGCCAAAAGGGTCTTCCCGGTCCCGGG 1564129
>seq24
Length=10012559
Score = 87.8 bits (96), Expect = 2e-12
Identities = 251/373 (67%), Gaps = 20/373 (5%)
Strand=Plus/Minus
Query 9194 ATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCGGC 9253
|||||| | ||||| || || | || ||| ||||| || ||||||||| | ||
Sbjct 7389912 ATCAAACCTTCCTGGCCGGAGCAAGGCAGAATCGAGGATTTCGGGACGATTCGTCACCGC 7389853
Query 9254 GATGACAA-CAATAC-CTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311
|||||||| || | | ||||| | | ||||||||||||||| || | | || ||
Sbjct 7389852 GATGACAATCACTCCACTGTTCCC--ACTAAAACCATCCATCTCAGTGAGCAACTGATTC 7389795
Query 9312 ATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTTGCTTTCCCA 9369
| ||||| || | |||||||| || | | | | |||| | | ||| | || |
Sbjct 7389794 AATGTTTGCTCTCTCTCATCATTTCCT--CCTCCAATGCCAGTCCCTCTCTGCCTCCCAA 7389737
Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATGGTTGATT----TTCGCGGGCGATTTCA 9425
| ||||||||||||||||||||||| | || || ||| ||||| | || |
Sbjct 7389736 CAGCATCAATCTCATCAATGAAGACCAAGCAAGGCGAATTCGCCTTCGC---CTTGTTGA 7389680
Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485
|| || || || ||||| ||||| || |||||||||||||| | || | || ||
Sbjct 7389679 AA-AGGTCACGCACCCTCGAAGCGCCTACGCCAACAAACATCTCAATGAACTCTGACCCG 7389621
Query 9486 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAAT-GGCTCGGGCGAGAAGAGTCT 9543
| ||| | | ||| ||||| || ||| || ||||| | || || | | ||| ||||
Sbjct 7389620 G-ACAGCGAAAAGAAAGGGACCCCAGCTTCTCCTGCAATCGCCTTGGCCAACAAG-GTCT 7389563
Query 9544 TACCCGTACCTGG 9556
| || || || ||
Sbjct 7389562 TCCCTGTCCCCGG 7389550
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 589712535730240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |