Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq444 540 1e-148 seq31551 255 7e-63 seq31730 214 2e-50 seq34854 165 9e-36 seq77 143 3e-29 seq31523 140 4e-28 seq203 138 1e-27 seq85 116 4e-21 seq134 89.7 6e-13 seq31544 86.0 7e-12 >seq444 Length=4271 Score = 540 bits (598), Expect = 1e-148 Identities = 719/999 (72%), Gaps = 0/999 (0%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610 |||||||| ||||| || ||| | | ||| ||| | ||||| |||||||| || Sbjct 1054 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 995 Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670 || || ||||| || || || | |||||||| | || |||| | || |||||||| Sbjct 994 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 935 Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730 || || || ||||| || |||| |||| || || || | || || |||||||| Sbjct 934 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 875 Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790 |||||||| || | | ||||| ||| |||| || || |||||||| | | | | Sbjct 874 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 815 Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850 | ||||| || | || | || || |||||| | |||||||| | | | | Sbjct 814 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 755 Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910 || |||||| | |||||||| |||||| |||||||| || || | || || ||| Sbjct 754 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 695 Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970 || ||| | | || ||| |||||||||| ||| ||||||||||||||||||||||| Sbjct 694 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 635 Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030 ||||| || |||||||| ||| | |||||||| || |||||||||||||||||||| || Sbjct 634 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 575 Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090 || || ||| ||| ||||| ||| | ||||| || || || || || ||||||||| Sbjct 574 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 515 Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150 || | ||||| ||| | | ||||| || || || || | |||||| || | ||| Sbjct 514 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 455 Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210 |||| ||||| |||||||||||||| || || ||||| || || || || || || || Sbjct 454 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 395 Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270 |||| || ||||| ||||| ||||||||||| || | | | || |||||| |||| Sbjct 394 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 335 Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330 | | || || ||| || | ||||| || || | ||||| |||| ||||| |||||| Sbjct 334 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 275 Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390 | || || || || || ||||||||||| || ||| | | || | ||| ||| Sbjct 274 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 215 Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450 |||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| ||| Sbjct 214 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 155 Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACA 169489 ||||||||||| |||||| |||| ||| |||| || || Sbjct 154 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 116 >seq31551 Length=1713 Score = 255 bits (282), Expect = 7e-63 Identities = 316/431 (73%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 169058 TTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGA 169117 ||||| || ||||||||| || ||||||||||| | ||||| ||| | | ||||| Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG 1090 Query 169118 GAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACC 169177 || || || || | |||||| || ||||||| |||||||||||||||||||| Sbjct 1089 GAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAACT 1030 Query 169178 TATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTC 169237 |||||||| || || || ||||| || || || |||| |||||||| ||||| ||| || Sbjct 1029 TATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGTC 970 Query 169238 AACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTA 169297 ||||| || | | || ||||||||||| | | || || ||| || | ||||| Sbjct 969 AACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 910 Query 169298 ACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCA 169357 || || | ||||| | || ||||| || |||| ||||| || || || |||||||| Sbjct 909 ACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATCT 850 Query 169358 GTTGTAGAT-GTTAACGGTAAGATC-----ATTCCTACATGGGGTGACGTACTTAACAGA 169411 || || ||| || || | ||| || ||| ||| |||| ||| | ||||| | Sbjct 849 GTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCGT 790 Query 169412 GCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTA 169471 || ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||| || Sbjct 789 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGACCTA 730 Query 169472 GCATCTGCTGA 169482 || ||| ||| Sbjct 729 GCTGCTGTTGA 719 >seq31730 Length=297 Score = 214 bits (236), Expect = 2e-50 Identities = 225/296 (76%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 168821 ATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCT 168880 |||||| | |||||||| | | | | || |||||| | |||||||| |||||| Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60 Query 168881 TATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGT 168940 |||||||| || || | || || ||| || ||| | | |||||| ||||||| || Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120 Query 168941 TCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTC 169000 ||| ||||||||||||||||||||||||||||| || |||||||||||| | |||||| Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180 Query 169001 CAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTC 169060 || || ||||||||||| |||||||| || || || ||| ||| ||||| ||| | ||| Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240 Query 169061 GGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAG 169116 || || || |||||| || ||||||||||| | ||||| ||| | | ||||| Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 296 >seq34854 Length=328 Score = 165 bits (182), Expect = 9e-36 Identities = 211/288 (73%), Gaps = 2/288 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| || Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 91 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 |||||||| ||||| || ||| | | ||| || ||| |||| || |||||||| || Sbjct 92 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 150 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || ||||| || || || | |||||||| | || ||||| | ||||||||||| Sbjct 151 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 210 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 || ||||| ||||| || |||| |||| || || ||| | || || |||||||| Sbjct 211 TATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAAT 270 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777 |||||||| || | | ||||| |||||||| || || |||||||| Sbjct 271 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTA 318 >seq77 Length=8408033 Score = 143 bits (158), Expect = 3e-29 Identities = 264/383 (69%), Gaps = 8/383 (2%) Strand=Plus/Plus Query 168596 TTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTA 168655 || || ||||| || || | ||||| || || || | ||||| | | | ||||| Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 168656 ATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTA 168715 | ||||||||||| || ||||| ||||| || ||||| |||| || || ||| | Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814 Query 168716 CACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCT 168775 || | |||||||| | ||||||| | || | ||||| |||||||| || || |||||| Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874 Query 168776 TACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGG 168835 || || | | | | |||||| || | || | || ||||||||| | ||||| Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934 Query 168836 GAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGT 168894 ||| ||| | | | ||||||||| | ||||||| |||||| |||||||| || || Sbjct 2698935 GAACTTAGTTTTC-GTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGT 2698993 Query 168895 ATCTGCA---GCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGA 168951 |||| || || || ||| | | |||||| ||||||| ||| | ||| Sbjct 2698994 ---TGCAATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCACATAAGTTTTTATGA 2699050 Query 168952 TGGTATGCCTCTAGGAATTTCTG 168974 | |||||||||||| ||||| || Sbjct 2699051 TTGTATGCCTCTAGAAATTTTTG 2699073 >seq31523 Length=225 Score = 140 bits (154), Expect = 4e-28 Identities = 151/200 (76%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207 ||||||| ||||||||||| |||||||| |||||||| || || || ||||| || || Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTA 169267 || |||| |||||||| ||||| ||||||||||| || | | | |||||||||||| Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 169268 GCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 169327 || | | || || ||| || | ||||| || || | |||||| | || ||||| ||| Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 169328 AACTTGAACGGATTTAACTT 169347 ||| | || || || || || Sbjct 205 AACCTAAATGGTTTCAATTT 224 >seq203 Length=8626763 Score = 138 bits (152), Expect = 1e-27 Identities = 162/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 168818 TACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 168877 ||||||||| ||| |||| | | | | ||||||||| | |||||||| |||| Sbjct 3756518 TACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTT 3756459 Query 168878 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG 168937 || |||||||| || || | | || ||| || ||| | | |||||| ||||||| Sbjct 3756458 GCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 3756399 Query 168938 GGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTA 168997 || || | ||||| |||||||||||||||||| | | ||||| |||||| | ||| Sbjct 3756398 GGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTA 3756339 Query 168998 TTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCAT 169036 |||||||| ||||||||||| |||||| |||| || ||| Sbjct 3756338 TTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCAT 3756300 >seq85 Length=5226098 Score = 116 bits (128), Expect = 4e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 169307 GGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366 |||||| | || ||||| |||||| | || || || || || |||||||| || || ||| Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294 Query 169367 GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATG 169426 | | ||| | ||| |||||||| ||| | |||| | || |||||||||||| Sbjct 1123293 AGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATG 1123234 Query 169427 GAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473 ||||| |||||||| |||| ||||| |||||||| |||||| |||| Sbjct 1123233 GAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187 >seq134 Length=15115857 Score = 89.7 bits (98), Expect = 6e-13 Identities = 168/243 (69%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 168536 TGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGC-ATGTTTCATTGTTGC 168594 ||||| ||||| || |||||||| ||||| || |||| | || ||| ||| |||| Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT-CAGCTTCTATATTT-ATTATTGC 3765941 Query 168595 ATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCT 168654 || |||| ||| || || || ||||| || || ||| | | ||| | | || |||| Sbjct 3765940 CTTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCT 3765881 Query 168655 AATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCT 168714 | | ||||| ||||| || || | | || || |||| || | | | || ||| | Sbjct 3765880 ACTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTT 3765821 Query 168715 ACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCC 168774 || || ||| |||| ||||||||||| | | ||||| |||||||| || | |||| Sbjct 3765820 GCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTCC 3765761 Query 168775 TTA 168777 ||| Sbjct 3765760 TTA 3765758 >seq31544 Length=164 Score = 86.0 bits (94), Expect = 7e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Plus Query 169351 CCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAG 169410 |||||| || || ||| | | ||| | ||| ||| |||| ||| | |||| | Sbjct 1 CCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCG 60 Query 169411 AGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTT 169470 || || |||||||||||||| |||||||| ||||| ||||| |||||||| |||||| | Sbjct 61 TGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 120 Query 169471 AGCATCTGCTGA 169482 ||| ||| ||| Sbjct 121 AGCTGCTGTTGA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564184948404480