Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_015283.1
Length=176428
Score E
Sequences producing significant alignments: (Bits) Value
seq444 540 1e-148
seq31551 255 7e-63
seq31730 214 2e-50
seq34854 165 9e-36
seq77 143 3e-29
seq31523 140 4e-28
seq203 138 1e-27
seq85 116 4e-21
seq134 89.7 6e-13
seq31544 86.0 7e-12
>seq444
Length=4271
Score = 540 bits (598), Expect = 1e-148
Identities = 719/999 (72%), Gaps = 0/999 (0%)
Strand=Plus/Minus
Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550
||||| | ||| |||| |||||| | ||| | ||||| |||| ||||| ||||| ||
Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055
Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGTTTCATTGTTGCATTTATTGCTGCACCA 168610
|||||||| ||||| || ||| | | ||| ||| | ||||| |||||||| ||
Sbjct 1054 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 995
Query 168611 CCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAAC 168670
|| || ||||| || || || | |||||||| | || |||| | || ||||||||
Sbjct 994 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 935
Query 168671 ATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAATT 168730
|| || || ||||| || |||| |||| || || || | || || ||||||||
Sbjct 934 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 875
Query 168731 TGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTACCAGTTGGTAATC 168790
|||||||| || | | ||||| ||| |||| || || |||||||| | | | |
Sbjct 874 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 815
Query 168791 TTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCATACAGA 168850
| ||||| || | || | || || |||||| | |||||||| | | | |
Sbjct 814 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 755
Query 168851 CTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCATTTGCA 168910
|| |||||| | |||||||| |||||| |||||||| || || | || || |||
Sbjct 754 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 695
Query 168911 GTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAGGAATT 168970
|| ||| | | || ||| |||||||||| ||| |||||||||||||||||||||||
Sbjct 694 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 635
Query 168971 TCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCATCCC 169030
||||| || |||||||| ||| | |||||||| || |||||||||||||||||||| ||
Sbjct 634 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 575
Query 169031 TTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGCATGGT 169090
|| || ||| ||| ||||| ||| | ||||| || || || || || |||||||||
Sbjct 574 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 515
Query 169091 TCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACTATGGT 169150
|| | ||||| ||| | | ||||| || || || || | |||||| || | |||
Sbjct 514 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 455
Query 169151 TACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTCGGT 169210
|||| ||||| |||||||||||||| || || ||||| || || || || || || ||
Sbjct 454 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 395
Query 169211 AGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTAGCA 169270
|||| || ||||| ||||| ||||||||||| || | | | || |||||| ||||
Sbjct 394 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 335
Query 169271 GTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCAAC 169330
| | || || ||| || | ||||| || || | ||||| |||| ||||| ||||||
Sbjct 334 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 275
Query 169331 TTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACA 169390
| || || || || || ||||||||||| || ||| | | || | ||| |||
Sbjct 274 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 215
Query 169391 TGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCT 169450
|||| ||| | ||||| | || ||||||||||||||||| |||||||| ||||| |||
Sbjct 214 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 155
Query 169451 CACAACTTCCCACTAGACTTAGCATCTGCTGAGACTACA 169489
||||||||||| |||||| |||| ||| |||| || ||
Sbjct 154 CACAACTTCCCTCTAGACCTAGCTGCTGTTGAGGCTCCA 116
>seq31551
Length=1713
Score = 255 bits (282), Expect = 7e-63
Identities = 316/431 (73%), Gaps = 6/431 (1%)
Strand=Plus/Minus
Query 169058 TTCGGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAGA 169117
||||| || ||||||||| || ||||||||||| | ||||| ||| | | |||||
Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG 1090
Query 169118 GAGACTACTGAGGAAGAATCTCAGAACTATGGTTACAAGTTCGGTCAAGAAGAAGAAACC 169177
|| || || || | |||||| || ||||||| ||||||||||||||||||||
Sbjct 1089 GAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAACT 1030
Query 169178 TATAATATTGTTGCAGCACATGGATACTTCGGTAGATTAATCTTCCAGTATGCAAGTTTC 169237
|||||||| || || || ||||| || || || |||| |||||||| ||||| ||| ||
Sbjct 1029 TATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGTC 970
Query 169238 AACAACTCAAGAAGTCTTCACTTCTTCCTAGCAGTGTTCCCAGTTGTATGTGTATGGTTA 169297
||||| || | | || ||||||||||| | | || || ||| || | |||||
Sbjct 969 AACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 910
Query 169298 ACCTCTATGGGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCA 169357
|| || | ||||| | || ||||| || |||| ||||| || || || ||||||||
Sbjct 909 ACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATCT 850
Query 169358 GTTGTAGAT-GTTAACGGTAAGATC-----ATTCCTACATGGGGTGACGTACTTAACAGA 169411
|| || ||| || || | ||| || ||| ||| |||| ||| | ||||| |
Sbjct 849 GTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCGT 790
Query 169412 GCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTA 169471
|| ||||||||||||||||| |||||||| ||||| ||||| |||||||| |||||| ||
Sbjct 789 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGACCTA 730
Query 169472 GCATCTGCTGA 169482
|| ||| |||
Sbjct 729 GCTGCTGTTGA 719
>seq31730
Length=297
Score = 214 bits (236), Expect = 2e-50
Identities = 225/296 (76%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 168821 ATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCT 168880
|||||| | |||||||| | | | | || |||||| | |||||||| ||||||
Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60
Query 168881 TATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGT 168940
|||||||| || || | || || ||| || ||| | | |||||| ||||||| ||
Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120
Query 168941 TCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTATTC 169000
||| ||||||||||||||||||||||||||||| || |||||||||||| | ||||||
Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180
Query 169001 CAAGCAGAGCACAACATTCTTATGCATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTC 169060
|| || ||||||||||| |||||||| || || || ||| ||| ||||| ||| | |||
Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240
Query 169061 GGTGGATCTCTATTCTCCGCAATGCATGGTTCACTTGTAACATCTTCTCTAATCAG 169116
|| || || |||||| || ||||||||||| | ||||| ||| | | |||||
Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 296
>seq34854
Length=328
Score = 165 bits (182), Expect = 9e-36
Identities = 211/288 (73%), Gaps = 2/288 (1%)
Strand=Plus/Plus
Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550
||||| | ||| |||| ||||| | ||| | ||||| |||| ||||| ||||| ||
Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 91
Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609
|||||||| ||||| || ||| | | ||| || ||| |||| || |||||||| ||
Sbjct 92 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 150
Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669
|| || ||||| || || || | |||||||| | || ||||| | |||||||||||
Sbjct 151 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 210
Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729
|| ||||| ||||| || |||| |||| || || ||| | || || ||||||||
Sbjct 211 TATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAAT 270
Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA 168777
|||||||| || | | ||||| |||||||| || || ||||||||
Sbjct 271 ATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTA 318
>seq77
Length=8408033
Score = 143 bits (158), Expect = 3e-29
Identities = 264/383 (69%), Gaps = 8/383 (2%)
Strand=Plus/Plus
Query 168596 TTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTA 168655
|| || ||||| || || | ||||| || || || | ||||| | | | |||||
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 168656 ATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTA 168715
| ||||||||||| || ||||| ||||| || ||||| |||| || || ||| |
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814
Query 168716 CACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCT 168775
|| | |||||||| | ||||||| | || | ||||| |||||||| || || ||||||
Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874
Query 168776 TACCAGTTGGTAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGG 168835
|| || | | | | |||||| || | || | || ||||||||| | |||||
Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934
Query 168836 GAA-TTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGT 168894
||| ||| | | | ||||||||| | ||||||| |||||| |||||||| || ||
Sbjct 2698935 GAACTTAGTTTTC-GTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGT 2698993
Query 168895 ATCTGCA---GCATTTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGA 168951
|||| || || || ||| | | |||||| ||||||| ||| | |||
Sbjct 2698994 ---TGCAATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCACATAAGTTTTTATGA 2699050
Query 168952 TGGTATGCCTCTAGGAATTTCTG 168974
| |||||||||||| ||||| ||
Sbjct 2699051 TTGTATGCCTCTAGAAATTTTTG 2699073
>seq31523
Length=225
Score = 140 bits (154), Expect = 4e-28
Identities = 151/200 (76%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 169148 GGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACTTC 169207
||||||| ||||||||||| |||||||| |||||||| || || || ||||| || ||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 169208 GGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTA 169267
|| |||| |||||||| ||||| ||||||||||| || | | | ||||||||||||
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 169268 GCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTC 169327
|| | | || || ||| || | ||||| || || | |||||| | || ||||| |||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 169328 AACTTGAACGGATTTAACTT 169347
||| | || || || || ||
Sbjct 205 AACCTAAATGGTTTCAATTT 224
>seq203
Length=8626763
Score = 138 bits (152), Expect = 1e-27
Identities = 162/219 (74%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 168818 TACATGGGTAGACAGTGGGAATTATCATACAGACTAGGTATGAGACCTTGGATCTGTGTT 168877
||||||||| ||| |||| | | | | ||||||||| | |||||||| ||||
Sbjct 3756518 TACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTT 3756459
Query 168878 GCTTATTCAGCACCAGTATCTGCAGCATTTGCAGTATTCCTTGTATACCCATTTGGTCAG 168937
|| |||||||| || || | | || ||| || ||| | | |||||| |||||||
Sbjct 3756458 GCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 3756399
Query 168938 GGTTCTTTCTCTGATGGTATGCCTCTAGGAATTTCTGGAACATTCAACTTCATGTTCGTA 168997
|| || | ||||| |||||||||||||||||| | | ||||| |||||| | |||
Sbjct 3756398 GGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTA 3756339
Query 168998 TTCCAAGCAGAGCACAACATTCTTATGCATCCCTTCCAT 169036
|||||||| ||||||||||| |||||| |||| || |||
Sbjct 3756338 TTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCAT 3756300
>seq85
Length=5226098
Score = 116 bits (128), Expect = 4e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 169307 GGTATCTGTACAATGGCATTCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGAT 169366
|||||| | || ||||| |||||| | || || || || || |||||||| || || |||
Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294
Query 169367 GTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATG 169426
| | ||| | ||| |||||||| ||| | |||| | || ||||||||||||
Sbjct 1123293 AGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATG 1123234
Query 169427 GAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTTAGC 169473
||||| |||||||| |||| ||||| |||||||| |||||| ||||
Sbjct 1123233 GAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187
>seq134
Length=15115857
Score = 89.7 bits (98), Expect = 6e-13
Identities = 168/243 (69%), Gaps = 3/243 (1%)
Strand=Plus/Minus
Query 168536 TGGTTCGGTGTCTTAATGATCCCATGTTTATTAACAGCAGCAGC-ATGTTTCATTGTTGC 168594
||||| ||||| || |||||||| ||||| || |||| | || ||| ||| ||||
Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT-CAGCTTCTATATTT-ATTATTGC 3765941
Query 168595 ATTTATTGCTGCACCACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCT 168654
|| |||| ||| || || || ||||| || || ||| | | ||| | | || ||||
Sbjct 3765940 CTTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCT 3765881
Query 168655 AATGTATGGAAACAACATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCT 168714
| | ||||| ||||| || || | | || || |||| || | | | || ||| |
Sbjct 3765880 ACTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTT 3765821
Query 168715 ACACTTCTACCCAATTTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCC 168774
|| || ||| |||| ||||||||||| | | ||||| |||||||| || | ||||
Sbjct 3765820 GCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTCC 3765761
Query 168775 TTA 168777
|||
Sbjct 3765760 TTA 3765758
>seq31544
Length=164
Score = 86.0 bits (94), Expect = 7e-12
Identities = 98/132 (74%), Gaps = 0/132 (0%)
Strand=Plus/Plus
Query 169351 CCAATCAGTTGTAGATGTTAACGGTAAGATCATTCCTACATGGGGTGACGTACTTAACAG 169410
|||||| || || ||| | | ||| | ||| ||| |||| ||| | |||| |
Sbjct 1 CCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCG 60
Query 169411 AGCAAACCTTGGTATGGAAGTAATGCATGAGCGTAACGCTCACAACTTCCCACTAGACTT 169470
|| || |||||||||||||| |||||||| ||||| ||||| |||||||| |||||| |
Sbjct 61 TGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 120
Query 169471 AGCATCTGCTGA 169482
||| ||| |||
Sbjct 121 AGCTGCTGTTGA 132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 564184948404480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |