Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_015287.1
Length=232878
Score E
Sequences producing significant alignments: (Bits) Value
seq444 536 2e-147
seq31730 205 1e-47
seq31551 199 6e-46
seq31523 141 1e-28
seq34854 131 3e-25
seq203 104 3e-17
seq77 102 1e-16
seq134 95.1 2e-14
seq85 91.5 2e-13
>seq444
Length=4271
Score = 536 bits (594), Expect = 2e-147
Identities = 714/992 (72%), Gaps = 0/992 (0%)
Strand=Plus/Minus
Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353
|| ||| | ||| | ||| ||||| || ||| | ||| |||| ||||||||||| |
Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055
Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413
||||| ||| | | | | || || || ||| || | |||||||| ||||| |||
Sbjct 1054 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 995
Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473
|| || ||||| || || || | || || ||| |||| ||| | | || || |||||
Sbjct 994 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 935
Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533
|| || || ||||| || | |||| ||| || || ||||| || || ||||| |||
Sbjct 934 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 875
Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593
|||||||| ||| | ||||| |||||||| ||||| || || |||| |||| || |
Sbjct 874 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 815
Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGA 215653
| ||||| | ||||| | || || || | ||||||||||| || | |
Sbjct 814 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 755
Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713
| |||||| | |||||||| |||||| || || || ||||| | ||||| |||
Sbjct 754 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 695
Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773
|| ||| | | |||||| | |||||||| ||| ||||||| |||||| || ||||||
Sbjct 694 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 635
Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833
||||| || ||||||| ||| |||| ||||||||||||||||||||||| |||||||||
Sbjct 634 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 575
Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893
|| |||||||||||||| |||||||| ||||| || || | || ||| ||||| |||
Sbjct 574 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 515
Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953
|| | || || ||| | | ||||| || || || || | |||||| || | |||
Sbjct 514 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 455
Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013
|||| ||||| ||||| || ||||| |||||||| |||||||| |||||||| |||||
Sbjct 454 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 395
Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073
|| | || |||||||| || ||||||||| || | | | || |||||| | ||
Sbjct 394 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 335
Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133
|| | || || | |||| ||| ||||| | ||| | |||||||| ||||||
Sbjct 334 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 275
Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193
|| || |||||||| |||||||| || || || || || |||||| ||||
Sbjct 274 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 215
Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCT 216253
||||| || || ||||| | || |||||||||||||| ||||| || ||||| |||
Sbjct 214 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 155
Query 216254 CACAACTTCCCATTAGACTTGGCTGCTGCTGA 216285
||||||||||| ||||| | ||||||| |||
Sbjct 154 CACAACTTCCCTCTAGACCTAGCTGCTGTTGA 123
>seq31730
Length=297
Score = 205 bits (226), Expect = 1e-47
Identities = 217/286 (76%), Gaps = 0/286 (0%)
Strand=Plus/Plus
Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693
||||||||||| || | | | |||||| | |||||||| |||||| || || || |
Sbjct 11 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 70
Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753
|||| | ||||| ||| || ||| | | || ||| | ||||| || ||| ||||
Sbjct 71 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 130
Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813
||| |||||| || ||||| ||||| || ||||||| |||| |||| |||||||||||||
Sbjct 131 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 190
Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873
||||||| || ||||||||||| ||||||||||| || |||||||| ||||| || ||
Sbjct 191 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 250
Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAG 215919
| ||| ||| ||||| ||||| | || || ||| | | |||||
Sbjct 251 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 296
>seq31551
Length=1713
Score = 199 bits (220), Expect = 6e-46
Identities = 308/439 (70%), Gaps = 7/439 (2%)
Strand=Plus/Minus
Query 215855 GGTGT-CTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCT 215913
||||| |||||| || || | ||| ||| ||||| ||||| | || || ||| | |
Sbjct 1156 GGTGTACTTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTT 1097
Query 215914 AATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGA 215973
||||| || || || || | |||||| || ||||||| ||||| ||||| ||
Sbjct 1096 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGA 1037
Query 215974 GGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC 216033
||||| || || ||||||||||| || ||||| ||||| || | ||||||||||| ||
Sbjct 1036 AGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 977
Query 216034 ATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTAT 216093
| ||||||| || | | || |||||||| || || | ||||| | ||||
Sbjct 976 TAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTAT 917
Query 216094 CTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAA 216153
|||| ||||| | ||| | || ||||| || || | ||||||||||| |||||
Sbjct 916 CTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAA 857
Query 216154 CCAGTCTGTCGTAG------ACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCT 216207
||| ||||| || | | | | ||| | || ||| ||| ||||| || | |
Sbjct 856 CCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCAT 797
Query 216208 TAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATT 216267
|||| | || |||||||||||||| ||||| || ||||| ||||| |||||||| |
Sbjct 796 TAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCT 737
Query 216268 AGACTTGGCTGCTGCTGAA 216286
|||| | ||||||| ||||
Sbjct 736 AGACCTAGCTGCTGTTGAA 718
>seq31523
Length=225
Score = 141 bits (156), Expect = 1e-28
Identities = 152/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010
||||||| ||||| |||||||| ||||| || || ||||||||||| || ||||| |||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070
|| || | ||||||||||| || ||||||||| || | | | |||||||||||
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130
|| || | ||||| | |||||||| ||||| | ||| || |||||||| |||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 216131 AACCTTAACGGTTTCAACTTC 216151
||||| || |||||||| |||
Sbjct 205 AACCTAAATGGTTTCAATTTC 225
>seq34854
Length=328
Score = 131 bits (144), Expect = 3e-25
Identities = 188/265 (71%), Gaps = 0/265 (0%)
Strand=Plus/Plus
Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374
|| || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | |
Sbjct 53 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 112
Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434
|| || || || || | || ||||| ||||| ||||| || ||||| || || ||
Sbjct 113 GCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 172
Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494
| || || ||| |||| ||| || | ||||| ||||| || ||||| ||||| || |
Sbjct 173 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCGGGTGCCATTATT 232
Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554
|||| ||| || || || || || || ||||| || |||||||| ||| | |||||
Sbjct 233 CCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGAT 292
Query 215555 GAATGGCTCTACAATGGTGGACCTT 215579
|||||| | ||||| || || ||||
Sbjct 293 GAATGGTTATACAACGGCGGTCCTT 317
>seq203
Length=8626763
Score = 104 bits (114), Expect = 3e-17
Identities = 146/205 (71%), Gaps = 0/205 (0%)
Strand=Plus/Minus
Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693
||| ||||||| || | | |||||||| | |||||||| |||||| || || || |
Sbjct 3756505 AGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTCAGCTC 3756446
Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753
| || | |||| ||| || ||| | | || ||| | ||||| || || | ||
Sbjct 3756445 CGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATG 3756386
Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813
||| |||||| || ||||| || | | ||||| | |||| |||| ||||| |||||||
Sbjct 3756385 ATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTATTCCAAGCTGAGC 3756326
Query 215814 ACAACATTCTGATGCACCCATTCCA 215838
||||||| || ||| | ||||| ||
Sbjct 3756325 ACAACATCCTTATGTATCCATTGCA 3756301
>seq77
Length=8408033
Score = 102 bits (112), Expect = 1e-16
Identities = 202/299 (68%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 215399 TTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTA 215458
||||| ||||| ||||| | ||||| || || || | | || || | | ||| ||
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 215459 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTA 215518
| ||||| ||||| || ||||| ||||| || | || | ||| || || || ||
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814
Query 215519 CACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCT 215578
|| | ||||| || | ||||||| || ||||||| |||||| | ||||| || || |||
Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874
Query 215579 TTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGG 215638
| | || || | | |||||| | ||||| | || ||| || | |||||
Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934
Query 215639 GAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGT 215697
|||||| || | |||||||| | ||||||| |||||| || || || |||||
Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGT 2698993
>seq134
Length=15115857
Score = 95.1 bits (104), Expect = 2e-14
Identities = 162/232 (70%), Gaps = 5/232 (2%)
Strand=Plus/Minus
Query 215339 TGGTTTGGTGTCCTCATGATTCCTTGCCTCCT--CGCAGCTACCACTTGTTTCATCGTAG 215396
||||||||||| | ||||| ||| | | | | ||||| | | | ||| || | |
Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTCAGCTTCTA--TATTT-ATTATTG 3765942
Query 215397 CATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTT 215456
| ||||| | ||| ||||| || ||||| || || ||| | |||| || |||| |||
Sbjct 3765941 CCTTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTC 3765882
Query 215457 TAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGAT 215516
|| | ||||||||||| || || | || || || | |||| | | | | || || |
Sbjct 3765881 TACTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTT 3765822
Query 215517 TACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAA 215568
| || || ||| | || |||||||||||| | ||||| |||||| | |||||
Sbjct 3765821 TGCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAA 3765770
>seq85
Length=5226098
Score = 91.5 bits (100), Expect = 2e-13
Identities = 121/168 (72%), Gaps = 0/168 (0%)
Strand=Plus/Minus
Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178
|||||||| |||||||| || |||||||| |||||||| || || || || |||
Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285
Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238
|| ||| ||| |||| || || |||| | || |||||||||||||| |||
Sbjct 1123284 CGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTTATG 1123225
Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286
|| || |||| ||||| |||||||| ||||| | ||| || ||||
Sbjct 1123224 CATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTACTATTGAA 1123177
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 744742811396480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |