Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq444 536 2e-147 seq31730 205 1e-47 seq31551 199 6e-46 seq31523 141 1e-28 seq34854 131 3e-25 seq203 104 3e-17 seq77 102 1e-16 seq134 95.1 2e-14 seq85 91.5 2e-13 >seq444 Length=4271 Score = 536 bits (594), Expect = 2e-147 Identities = 714/992 (72%), Gaps = 0/992 (0%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || ||| | ||| | ||| ||||| || ||| | ||| |||| ||||||||||| | Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| ||| | | | | || || || ||| || | |||||||| ||||| ||| Sbjct 1054 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 995 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || ||||| || || || | || || ||| |||| ||| | | || || ||||| Sbjct 994 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 935 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 || || || ||||| || | |||| ||| || || ||||| || || ||||| ||| Sbjct 934 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 875 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| ||| | ||||| |||||||| ||||| || || |||| |||| || | Sbjct 874 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 815 Query 215594 TTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGGGAACTTTCTTACAGA 215653 | ||||| | ||||| | || || || | ||||||||||| || | | Sbjct 814 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 755 Query 215654 TTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTGCA 215713 | |||||| | |||||||| |||||| || || || ||||| | ||||| ||| Sbjct 754 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 695 Query 215714 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAATC 215773 || ||| | | |||||| | |||||||| ||| ||||||| |||||| || |||||| Sbjct 694 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 635 Query 215774 TCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACCCA 215833 ||||| || ||||||| ||| |||| ||||||||||||||||||||||| ||||||||| Sbjct 634 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 575 Query 215834 TTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACGGT 215893 || |||||||||||||| |||||||| ||||| || || | || ||| ||||| ||| Sbjct 574 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 515 Query 215894 TCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGT 215953 || | || || ||| | | ||||| || || || || | |||||| || | ||| Sbjct 514 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 455 Query 215954 TACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGT 216013 |||| ||||| ||||| || ||||| |||||||| |||||||| |||||||| ||||| Sbjct 454 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 395 Query 216014 CGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCA 216073 || | || |||||||| || ||||||||| || | | | || |||||| | || Sbjct 394 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 335 Query 216074 GCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAAC 216133 || | || || | |||| ||| ||||| | ||| | |||||||| |||||| Sbjct 334 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 275 Query 216134 CTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTACT 216193 || || |||||||| |||||||| || || || || || |||||| |||| Sbjct 274 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 215 Query 216194 TGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCT 216253 ||||| || || ||||| | || |||||||||||||| ||||| || ||||| ||| Sbjct 214 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 155 Query 216254 CACAACTTCCCATTAGACTTGGCTGCTGCTGA 216285 ||||||||||| ||||| | ||||||| ||| Sbjct 154 CACAACTTCCCTCTAGACCTAGCTGCTGTTGA 123 >seq31730 Length=297 Score = 205 bits (226), Expect = 1e-47 Identities = 217/286 (76%), Gaps = 0/286 (0%) Strand=Plus/Plus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||||||||||| || | | | |||||| | |||||||| |||||| || || || | Sbjct 11 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 70 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 |||| | ||||| ||| || ||| | | || ||| | ||||| || ||| |||| Sbjct 71 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 130 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||||| || ||||| ||||| || ||||||| |||| |||| ||||||||||||| Sbjct 131 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 190 Query 215814 ACAACATTCTGATGCACCCATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCAT 215873 ||||||| || ||||||||||| ||||||||||| || |||||||| ||||| || || Sbjct 191 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 250 Query 215874 TGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCTAATCAG 215919 | ||| ||| ||||| ||||| | || || ||| | | ||||| Sbjct 251 TATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 296 >seq31551 Length=1713 Score = 199 bits (220), Expect = 6e-46 Identities = 308/439 (70%), Gaps = 7/439 (2%) Strand=Plus/Minus Query 215855 GGTGT-CTTCGGTGGTTCATTGTTCTCTGCAATGCACGGTTCACTTGTTACATCTTCTCT 215913 ||||| |||||| || || | ||| ||| ||||| ||||| | || || ||| | | Sbjct 1156 GGTGTACTTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTT 1097 Query 215914 AATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACGGTTACAAGTTCGGACAAGAGGA 215973 ||||| || || || || | |||||| || ||||||| ||||| ||||| || Sbjct 1096 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGA 1037 Query 215974 GGAAACATACAACATCGTAGCTGCACACGGTTACTTTGGTCGCCTCATCTTCCAATACGC 216033 ||||| || || ||||||||||| || ||||| ||||| || | ||||||||||| || Sbjct 1036 AGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 977 Query 216034 ATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTGCAGCATTCCCTGTTATTTGTAT 216093 | ||||||| || | | || |||||||| || || | ||||| | |||| Sbjct 976 TAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTAT 917 Query 216094 CTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCAACCTTAACGGTTTCAACTTCAA 216153 |||| ||||| | ||| | || ||||| || || | ||||||||||| ||||| Sbjct 916 CTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAA 857 Query 216154 CCAGTCTGTCGTAG------ACGCATCTGGTAAAGTTATTCCTACTTGGGCAGACGTTCT 216207 ||| ||||| || | | | | ||| | || ||| ||| ||||| || | | Sbjct 856 CCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCAT 797 Query 216208 TAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCATT 216267 |||| | || |||||||||||||| ||||| || ||||| ||||| |||||||| | Sbjct 796 TAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCT 737 Query 216268 AGACTTGGCTGCTGCTGAA 216286 |||| | ||||||| |||| Sbjct 736 AGACCTAGCTGCTGTTGAA 718 >seq31523 Length=225 Score = 141 bits (156), Expect = 1e-28 Identities = 152/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 215951 GGTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTT 216010 ||||||| ||||| |||||||| ||||| || || ||||||||||| || ||||| ||| Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 216011 GGTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 216070 || || | ||||||||||| || ||||||||| || | | | ||||||||||| Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 216071 GCAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTC 216130 || || | ||||| | |||||||| ||||| | ||| || |||||||| ||| Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 216131 AACCTTAACGGTTTCAACTTC 216151 ||||| || |||||||| ||| Sbjct 205 AACCTAAATGGTTTCAATTTC 225 >seq34854 Length=328 Score = 131 bits (144), Expect = 3e-25 Identities = 188/265 (71%), Gaps = 0/265 (0%) Strand=Plus/Plus Query 215315 ACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTCATGATTCCTTGCCTCCTCGCA 215374 || || || ||| | ||| |||| ||||||||||| | ||||| ||| | | | | Sbjct 53 ACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACC 112 Query 215375 GCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCTCCTGTCGATATCGACGGAATC 215434 || || || || || | || ||||| ||||| ||||| || ||||| || || || Sbjct 113 GCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATT 172 Query 215435 AGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTA 215494 | || || ||| |||| ||| || | ||||| ||||| || ||||| ||||| || | Sbjct 173 CGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCGGGTGCCATTATT 232 Query 215495 CCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGAC 215554 |||| ||| || || || || || || ||||| || |||||||| ||| | ||||| Sbjct 233 CCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGAT 292 Query 215555 GAATGGCTCTACAATGGTGGACCTT 215579 |||||| | ||||| || || |||| Sbjct 293 GAATGGTTATACAACGGCGGTCCTT 317 >seq203 Length=8626763 Score = 104 bits (114), Expect = 3e-17 Identities = 146/205 (71%), Gaps = 0/205 (0%) Strand=Plus/Minus Query 215634 AGTGGGAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCAC 215693 ||| ||||||| || | | |||||||| | |||||||| |||||| || || || | Sbjct 3756505 AGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTCAGCTC 3756446 Query 215694 CTGTATCTGCTGCCTTTGCAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTG 215753 | || | |||| ||| || ||| | | || ||| | ||||| || || | || Sbjct 3756445 CGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATG 3756386 Query 215754 ATGCTATGCCACTTGGAATCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGC 215813 ||| |||||| || ||||| || | | ||||| | |||| |||| ||||| ||||||| Sbjct 3756385 ATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTATTCCAAGCTGAGC 3756326 Query 215814 ACAACATTCTGATGCACCCATTCCA 215838 ||||||| || ||| | ||||| || Sbjct 3756325 ACAACATCCTTATGTATCCATTGCA 3756301 >seq77 Length=8408033 Score = 102 bits (112), Expect = 1e-16 Identities = 202/299 (68%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 215399 TTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTA 215458 ||||| ||||| ||||| | ||||| || || || | | || || | | ||| || Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 215459 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTA 215518 | ||||| ||||| || ||||| ||||| || | || | ||| || || || || Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814 Query 215519 CACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCT 215578 || | ||||| || | ||||||| || ||||||| |||||| | ||||| || || ||| Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874 Query 215579 TTCCAACTGGTTATCTTCCACTTCCTCATTGGTATTTCTGCATACTGCGGAAGACAGTGG 215638 | | || || | | |||||| | ||||| | || ||| || | ||||| Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934 Query 215639 GAACTTTCTTACAGATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGT 215697 |||||| || | |||||||| | ||||||| |||||| || || || ||||| Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGT 2698993 >seq134 Length=15115857 Score = 95.1 bits (104), Expect = 2e-14 Identities = 162/232 (70%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 215339 TGGTTTGGTGTCCTCATGATTCCTTGCCTCCT--CGCAGCTACCACTTGTTTCATCGTAG 215396 ||||||||||| | ||||| ||| | | | | ||||| | | | ||| || | | Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTCAGCTTCTA--TATTT-ATTATTG 3765942 Query 215397 CATTCATCGCTGCACCTCCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTT 215456 | ||||| | ||| ||||| || ||||| || || ||| | |||| || |||| ||| Sbjct 3765941 CCTTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTC 3765882 Query 215457 TAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGAT 215516 || | ||||||||||| || || | || || || | |||| | | | | || || | Sbjct 3765881 TACTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTT 3765822 Query 215517 TACACTTCTACCCTATCTGGGAAGCAGCAACAGTTGACGAATGGCTCTACAA 215568 | || || ||| | || |||||||||||| | ||||| |||||| | ||||| Sbjct 3765821 TGCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAA 3765770 >seq85 Length=5226098 Score = 91.5 bits (100), Expect = 2e-13 Identities = 121/168 (72%), Gaps = 0/168 (0%) Strand=Plus/Minus Query 216119 ACTATGGCGTTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGT 216178 |||||||| |||||||| || |||||||| |||||||| || || || || ||| Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285 Query 216179 AAAGTTATTCCTACTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATG 216238 || ||| ||| |||| || || |||| | || |||||||||||||| ||| Sbjct 1123284 CGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTTATG 1123225 Query 216239 CACGAGCGTAACGCTCACAACTTCCCATTAGACTTGGCTGCTGCTGAA 216286 || || |||| ||||| |||||||| ||||| | ||| || |||| Sbjct 1123224 CATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTACTATTGAA 1123177 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 744742811396480