Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq444 526 3e-144 seq31551 233 2e-56 seq31730 196 6e-45 seq31523 156 5e-33 seq34854 138 1e-27 seq203 129 7e-25 seq85 105 8e-18 seq134 86.0 7e-12 >seq444 Length=4271 Score = 526 bits (582), Expect = 3e-144 Identities = 707/984 (72%), Gaps = 0/984 (0%) Strand=Plus/Minus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 1105 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1046 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| | || ||||| || ||||| || || || Sbjct 1045 ACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 986 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | || || ||||| || || || Sbjct 985 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCC 926 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || || | || || || || || |||||||| Sbjct 925 GGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCT 866 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998 ||| | | ||||| ||| | || ||||| ||||||||| || || || | | ||||| Sbjct 865 GCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTT 806 Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058 | | || | || || |||||| | |||||||||| | |||| | |||||| Sbjct 805 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 746 Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118 ||||||||||| ||| |||||||| ||||| || |||| || ||||| ||||| Sbjct 745 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTG 686 Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178 | ||||| | ||||||||| ||| || || || ||||||||||| ||||| ||||| Sbjct 685 ATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 626 Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238 || ||||| ||| | |||||||| || |||||||||||||||||||||||||| || ||| Sbjct 625 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 566 Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298 ||| || |||||| | ||||| || | || || || ||||| ||||| | ||| Sbjct 565 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTA 506 Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358 || ||| | | ||||| || || ||||| || || || || | || |||| |||| Sbjct 505 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 446 Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418 || |||||||||||||| ||||||||||| || || || || || ||||| || | || Sbjct 445 GGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATT 386 Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478 |||||||||||||| || |||||| |||| | | || |||||| | || | | || Sbjct 385 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 326 Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538 |||||| | || ||||| ||| | | |||||| | || ||||| || ||||| ||||| Sbjct 325 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGT 266 Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598 || || |||||||| ||| | || ||| | || || || ||| ||||| || Sbjct 265 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 206 Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658 || ||||| | || ||||| ||||||||||| |||||||| |||||||| ||||||||| Sbjct 205 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 146 Query 170659 CCACTTGACTTGGCAACTGCTGAG 170682 || || ||| | || ||| |||| Sbjct 145 CCTCTAGACCTAGCTGCTGTTGAG 122 >seq31551 Length=1713 Score = 233 bits (258), Expect = 2e-56 Identities = 310/431 (72%), Gaps = 6/431 (1%) Strand=Plus/Minus Query 170257 TTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGA 170316 ||||| || | || ||| || ||||| ||||| | ||||| ||| | | ||||| Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG 1090 Query 170317 GAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACA 170376 || || ||||| || || || || || |||| |||||| |||||||||||||| Sbjct 1089 GAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAACT 1030 Query 170377 TACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTT 170436 || || || || || || ||||| || ||||| || | ||||||||||||||||| | Sbjct 1029 TATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGTC 970 Query 170437 AACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTA 170496 |||||| |||| | || |||||||| ||| | | ||||||||| | |||||||| Sbjct 969 AACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 910 Query 170497 ACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCA 170556 ||| | | |||||| |||| ||||| ||| || | || || || || |||||||| || Sbjct 909 ACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATCT 850 Query 170557 ATCGTAGAT------GGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGA 170610 | || ||| ||| ||| | ||| || ||| ||||| || | ||||| | Sbjct 849 GTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCGT 790 Query 170611 GCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTG 170670 || ||||| ||||||||||| |||||||| |||||||| || |||||||| || ||| | Sbjct 789 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGACCTA 730 Query 170671 GCAACTGCTGA 170681 || ||| ||| Sbjct 729 GCTGCTGTTGA 719 >seq31730 Length=297 Score = 196 bits (216), Expect = 6e-45 Identities = 221/296 (75%), Gaps = 0/296 (0%) Strand=Plus/Plus Query 170020 ATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCA 170079 |||||| | |||||||||| | |||| | |||||||| |||||||| ||| ||| Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60 Query 170080 TATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGA 170139 ||||| ||||| || |||| || ||||| ||||| | || || | ||||| ||| Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120 Query 170140 TCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTC 170199 ||| || || || ||||||||||| || || ||||| || ||||||||| | |||||| Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180 Query 170200 CAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTC 170259 || || ||||||||||| |||||||||||||| || ||| ||| || |||||| | ||| Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240 Query 170260 GGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAG 170315 || || | || ||| || ||||| ||||| | ||||| ||| | | ||||| Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 296 >seq31523 Length=225 Score = 156 bits (172), Expect = 5e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406 || |||| |||||| ||||| |||||||| || || || || || || ||||| || ||| Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTT 170466 || || | ||||||||||||||||| || |||||| |||| | | ||||||||||| Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 170467 GCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTT 170526 ||| | | ||||||||| | |||||||| ||| | | ||||| |||| ||||| || Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 170527 AACCTTAATGGATTTAACTTC 170547 ||||| ||||| || || ||| Sbjct 205 AACCTAAATGGTTTCAATTTC 225 >seq34854 Length=328 Score = 138 bits (152), Expect = 1e-27 Identities = 198/279 (71%), Gaps = 0/279 (0%) Strand=Plus/Plus Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758 ||| |||| ||||| | ||||| | || |||| ||||| ||||| ||||||||||| Sbjct 41 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 100 Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818 |||| | ||| | | ||||| |||| ||||| || ||||| || || || Sbjct 101 ACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAT 160 Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878 || ||||| || | |||||||| | || || | | ||||| ||||| || ||||| Sbjct 161 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCG 220 Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938 ||||| || |||| |||| || || ||| | || || || || || |||||||| Sbjct 221 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCG 280 Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977 ||| || | ||||| ||||| || ||||| ||||||||| Sbjct 281 GCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTAT 319 >seq203 Length=8626763 Score = 129 bits (142), Expect = 7e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076 ||||||||| ||| |||||| | |||| |||||||||| |||||||| ||| Sbjct 3756518 TACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTT 3756459 Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136 |||||||| ||||| || || | || ||||| ||||| | || || | ||||| Sbjct 3756458 GCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 3756399 Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196 ||| || | || | ||||||||||| || || || | || || |||||| | ||| Sbjct 3756398 GGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTA 3756339 Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235 |||||||| ||||||||||| |||||| | ||||| ||| Sbjct 3756338 TTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCAT 3756300 >seq85 Length=5226098 Score = 105 bits (116), Expect = 8e-18 Identities = 126/171 (74%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 170506 GGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGAT 170565 ||||| |||| ||||| || ||||| ||||| || || |||||||| || | || ||| Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294 Query 170566 GGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATG 170625 | ||| ||| || |||||||| || || |||| | || ||||| |||||| Sbjct 1123293 AGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATG 1123234 Query 170626 GAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACT 170676 ||||| |||||||| ||||||| || |||||||| || ||| | || ||| Sbjct 1123233 GAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTACT 1123183 >seq134 Length=15115857 Score = 86.0 bits (94), Expect = 7e-12 Identities = 178/264 (67%), Gaps = 1/264 (0%) Strand=Plus/Minus Query 169735 TGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCT 169794 ||||| ||||| ||||||||||| |||| | |||| | ||||| |||| Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT-CAGCTTCTATATTTATTATTGCC 3765940 Query 169795 TTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTC 169854 ||||| | ||||| || || || || ||||| ||| | | ||| | | || || | Sbjct 3765939 TTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCTA 3765880 Query 169855 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTC 169914 | ||||||||||| || || | || || || |||| || | | | || ||| | Sbjct 3765879 CTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTTG 3765820 Query 169915 CACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCT 169974 || || || | || |||||||||||| || | ||||| ||||| || |||| ||||| Sbjct 3765819 CATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTCCT 3765760 Query 169975 TATCAATTAGTTATCTTCCACTTC 169998 ||| | || || | | |||||| Sbjct 3765759 TATGAGCTAATTGTTCTACACTTC 3765736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582582979014400