Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_015290.1
Length=182180
Score E
Sequences producing significant alignments: (Bits) Value
seq444 526 3e-144
seq31551 233 2e-56
seq31730 196 6e-45
seq31523 156 5e-33
seq34854 138 1e-27
seq203 129 7e-25
seq85 105 8e-18
seq134 86.0 7e-12
>seq444
Length=4271
Score = 526 bits (582), Expect = 3e-144
Identities = 707/984 (72%), Gaps = 0/984 (0%)
Strand=Plus/Minus
Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758
||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||||
Sbjct 1105 TGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 1046
Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818
|||| | ||| | | ||||| | || ||||| || ||||| || || ||
Sbjct 1045 ACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGAT 986
Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878
|| ||||| || | |||||||| | || || | | || || ||||| || || ||
Sbjct 985 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCC 926
Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938
||||| || |||| |||| || || || | || || || || || ||||||||
Sbjct 925 GGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCT 866
Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCACTTC 169998
||| | | ||||| ||| | || ||||| ||||||||| || || || | | |||||
Sbjct 865 GCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTT 806
Query 169999 CTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATG 170058
| | || | || || |||||| | |||||||||| | |||| | ||||||
Sbjct 805 TTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATG 746
Query 170059 CGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTA 170118
||||||||||| ||| |||||||| ||||| || |||| || ||||| |||||
Sbjct 745 CGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTG 686
Query 170119 GTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACA 170178
| ||||| | ||||||||| ||| || || || ||||||||||| ||||| |||||
Sbjct 685 ATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACT 626
Query 170179 TTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCATATG 170238
|| ||||| ||| | |||||||| || |||||||||||||||||||||||||| || |||
Sbjct 625 TTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATG 566
Query 170239 GCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTA 170298
||| || |||||| | ||||| || | || || || ||||| ||||| | |||
Sbjct 565 TTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTA 506
Query 170299 ACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTC 170358
|| ||| | | ||||| || || ||||| || || || || | || |||| ||||
Sbjct 505 ACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTC 446
Query 170359 GGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATC 170418
|| |||||||||||||| ||||||||||| || || || || || ||||| || | ||
Sbjct 445 GGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATT 386
Query 170419 TTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCT 170478
|||||||||||||| || |||||| |||| | | || |||||| | || | | ||
Sbjct 385 TTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCG 326
Query 170479 GTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGA 170538
|||||| | || ||||| ||| | | |||||| | || ||||| || ||||| |||||
Sbjct 325 GTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGT 266
Query 170539 TTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGCAGAC 170598
|| || |||||||| ||| | || ||| | || || || ||| ||||| ||
Sbjct 265 TTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGAT 206
Query 170599 GTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTC 170658
|| ||||| | || ||||| ||||||||||| |||||||| |||||||| |||||||||
Sbjct 205 ATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTC 146
Query 170659 CCACTTGACTTGGCAACTGCTGAG 170682
|| || ||| | || ||| ||||
Sbjct 145 CCTCTAGACCTAGCTGCTGTTGAG 122
>seq31551
Length=1713
Score = 233 bits (258), Expect = 2e-56
Identities = 310/431 (72%), Gaps = 6/431 (1%)
Strand=Plus/Minus
Query 170257 TTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAGA 170316
||||| || | || ||| || ||||| ||||| | ||||| ||| | | |||||
Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG 1090
Query 170317 GAGACAACAGATAACGAGTCACAGAACTATGGATACAAATTCGGACAAGAAGAAGAAACA 170376
|| || ||||| || || || || || |||| |||||| ||||||||||||||
Sbjct 1089 GAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAACT 1030
Query 170377 TACAACATTGTTGCAGCACATGGATACTTTGGTAGACTTATCTTCCAATATGCTAGCTTT 170436
|| || || || || || ||||| || ||||| || | ||||||||||||||||| |
Sbjct 1029 TATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGTC 970
Query 170437 AACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATTCCCTGTAGTATGCATCTGGTTA 170496
|||||| |||| | || |||||||| ||| | | ||||||||| | ||||||||
Sbjct 969 AACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 910
Query 170497 ACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCA 170556
||| | | |||||| |||| ||||| ||| || | || || || || |||||||| ||
Sbjct 909 ACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATCT 850
Query 170557 ATCGTAGAT------GGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGA 170610
| || ||| ||| ||| | ||| || ||| ||||| || | ||||| |
Sbjct 849 GTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCGT 790
Query 170611 GCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTG 170670
|| ||||| ||||||||||| |||||||| |||||||| || |||||||| || ||| |
Sbjct 789 GCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGACCTA 730
Query 170671 GCAACTGCTGA 170681
|| ||| |||
Sbjct 729 GCTGCTGTTGA 719
>seq31730
Length=297
Score = 196 bits (216), Expect = 6e-45
Identities = 221/296 (75%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 170020 ATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTAGCA 170079
|||||| | |||||||||| | |||| | |||||||| |||||||| ||| |||
Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60
Query 170080 TATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAGGGA 170139
||||| ||||| || |||| || ||||| ||||| | || || | ||||| |||
Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120
Query 170140 TCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTATTC 170199
||| || || || ||||||||||| || || ||||| || ||||||||| | ||||||
Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180
Query 170200 CAAGCAGAGCACAACATTCTTATGCACCCATTCCATATGGCAGGGGTTGCTGGTATGTTC 170259
|| || ||||||||||| |||||||||||||| || ||| ||| || |||||| | |||
Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240
Query 170260 GGAGGAGCACTCTTCTCAGCAATGCACGGTTCACTTGTAACATCTTCTCTAATCAG 170315
|| || | || ||| || ||||| ||||| | ||||| ||| | | |||||
Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 296
>seq31523
Length=225
Score = 156 bits (172), Expect = 5e-33
Identities = 155/201 (77%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 170347 GGATACAAATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTT 170406
|| |||| |||||| ||||| |||||||| || || || || || || ||||| || |||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 170407 GGTAGACTTATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTT 170466
|| || | ||||||||||||||||| || |||||| |||| | | |||||||||||
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 170467 GCTACATTCCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTT 170526
||| | | ||||||||| | |||||||| ||| | | ||||| |||| ||||| ||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 170527 AACCTTAATGGATTTAACTTC 170547
||||| ||||| || || |||
Sbjct 205 AACCTAAATGGTTTCAATTTC 225
>seq34854
Length=328
Score = 138 bits (152), Expect = 1e-27
Identities = 198/279 (71%), Gaps = 0/279 (0%)
Strand=Plus/Plus
Query 169699 TGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGATCCCA 169758
||| |||| ||||| | ||||| | || |||| ||||| ||||| |||||||||||
Sbjct 41 TGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCT 100
Query 169759 TGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGTGGAC 169818
|||| | ||| | | ||||| |||| ||||| || ||||| || || ||
Sbjct 101 ACCTTATTGACCGCAACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGAT 160
Query 169819 ATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCATCTCT 169878
|| ||||| || | |||||||| | || || | | ||||| ||||| || |||||
Sbjct 161 ATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCG 220
Query 169879 GGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGAAGCA 169938
||||| || |||| |||| || || ||| | || || || || || ||||||||
Sbjct 221 GGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCG 280
Query 169939 GCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTAT 169977
||| || | ||||| ||||| || ||||| |||||||||
Sbjct 281 GCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTAT 319
>seq203
Length=8626763
Score = 129 bits (142), Expect = 7e-25
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 170017 TACATGGGTAGACAGTGGGAACTATCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTA 170076
||||||||| ||| |||||| | |||| |||||||||| |||||||| |||
Sbjct 3756518 TACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTT 3756459
Query 170077 GCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATTCTTAGTGTATCCTTTCGGTCAG 170136
|||||||| ||||| || || | || ||||| ||||| | || || | |||||
Sbjct 3756458 GCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAA 3756399
Query 170137 GGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGGTACATTTAACTTCATGTTCGTA 170196
||| || | || | ||||||||||| || || || | || || |||||| | |||
Sbjct 3756398 GGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTA 3756339
Query 170197 TTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCAT 170235
|||||||| ||||||||||| |||||| | ||||| |||
Sbjct 3756338 TTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCAT 3756300
>seq85
Length=5226098
Score = 105 bits (116), Expect = 8e-18
Identities = 126/171 (74%), Gaps = 0/171 (0%)
Strand=Plus/Minus
Query 170506 GGTATTTGCACAATGGCATTTAACCTTAATGGATTTAACTTCAACCAGTCAATCGTAGAT 170565
||||| |||| ||||| || ||||| ||||| || || |||||||| || | || |||
Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294
Query 170566 GGATCTGGTAAAGTAGTTCCTACATGGGCAGACGTTCTTAACAGAGCAAACCTAGGTATG 170625
| ||| ||| || |||||||| || || |||| | || ||||| ||||||
Sbjct 1123293 AGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATG 1123234
Query 170626 GAAGTAATGCATGAGCGTAATGCACACAACTTCCCACTTGACTTGGCAACT 170676
||||| |||||||| ||||||| || |||||||| || ||| | || |||
Sbjct 1123233 GAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTACT 1123183
>seq134
Length=15115857
Score = 86.0 bits (94), Expect = 7e-12
Identities = 178/264 (67%), Gaps = 1/264 (0%)
Strand=Plus/Minus
Query 169735 TGGTTCGGTGTCTTGATGATCCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCT 169794
||||| ||||| ||||||||||| |||| | |||| | ||||| ||||
Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT-CAGCTTCTATATTTATTATTGCC 3765940
Query 169795 TTCATCGCAGCTCCACCTGTGGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTC 169854
||||| | ||||| || || || || ||||| ||| | | ||| | | || || |
Sbjct 3765939 TTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCTA 3765880
Query 169855 ATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTC 169914
| ||||||||||| || || | || || || |||| || | | | || ||| |
Sbjct 3765879 CTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTTG 3765820
Query 169915 CACTTCTATCCTATTTGGGAAGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCT 169974
|| || || | || |||||||||||| || | ||||| ||||| || |||| |||||
Sbjct 3765819 CATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTCCT 3765760
Query 169975 TATCAATTAGTTATCTTCCACTTC 169998
||| | || || | | ||||||
Sbjct 3765759 TATGAGCTAATTGTTCTACACTTC 3765736
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 582582979014400
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