Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_015569.1
Length=178563
Score E
Sequences producing significant alignments: (Bits) Value
seq444 630 8e-176
seq31551 266 4e-66
seq31730 226 3e-54
seq31523 167 3e-36
seq77 150 2e-31
seq203 122 1e-22
seq134 114 1e-20
seq85 95.1 1e-14
seq31544 93.3 5e-14
seq151 84.2 2e-11
>seq444
Length=4271
Score = 630 bits (698), Expect = 8e-176
Identities = 725/973 (75%), Gaps = 2/973 (0%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
|||||||| || || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 144 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 203
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| ||
Sbjct 204 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 263
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164
|| ||||| || || || ||||| || |||| ||| | ||||| ||||||||| || ||
Sbjct 264 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 323
Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224
|| |||||||| || ||||| || || | ||||||| ||||||||| |||||| |||
Sbjct 324 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 383
Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
|| || | || || || || ||||||||||| ||||| || |||||||| ||||||||
Sbjct 384 AAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGC 443
Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344
||||| ||||||| | || || |||||||||| ||||| | ||| | | ||||
Sbjct 444 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 503
Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404
|| || | ||||||||||| ||| || || | || |||||||||||||| || ||
Sbjct 504 GTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACACCAGCTACACCT 563
Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464
||||||||||| || |||||||| ||||| || || |||||||| |||| ||| |||||
Sbjct 564 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 623
Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524
|| || || ||||| || || ||||| |||||||| ||| || || || | |||||
Sbjct 624 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAG 683
Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584
| | ||| ||||||| || |||||||| ||||| || || |||||| ||||| |||
Sbjct 684 ATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 743
Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644
|||||||| ||||| | ||||||||| ||||||||||| ||| | | ||||||
Sbjct 744 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 803
Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704
| ||||| | |||| |||| |||||| || || || ||||||||||| || | |
Sbjct 804 AAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGAT 863
Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764
|| |||||||| || || || ||||| | |||||||| ||| | |||| | ||||
Sbjct 864 GCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGGCA 923
Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824
|| ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| |||
Sbjct 924 CCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 983
Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGAT-GAAACAGACAGTGGCAGCAAGTAG 84883
||||| ||||| || ||| ||| |||||| || || ||||||| ||| || | | ||
Sbjct 984 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA-AGTTGCGGTCAATAA 1042
Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943
|| || ||||| | | |||||||| |||| || | |||||| | |||| || |
Sbjct 1043 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTAT 1102
Query 84944 CCAATCACAGAAG 84956
||| | |||||||
Sbjct 1103 CCAGTTACAGAAG 1115
>seq31551
Length=1713
Score = 266 bits (294), Expect = 4e-66
Identities = 313/418 (75%), Gaps = 9/418 (2%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||||||| ||||| |||||||||||||| ||||| ||||
Sbjct 740 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 799
Query 84045 ACATCGGCCCAGGTATTGACAACACGG----TT--TTGGCTATCGACAAGACTCTGATTG 84098
| ||| ||||||||||| | ||| | || ||| ||||| || | | || |||
Sbjct 800 AGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGACTATCAACTACAGATTGGTTG 859
Query 84099 AAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATG 84158
|| || || || || | | ||| ||||||||||||| ||| | ||||| ||||| ||
Sbjct 860 AAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATACCTAAAGCAGTGAACCAGATA 919
Query 84159 CCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCA 84218
|| || || ||||||||||| | ||| || || | |||||| |||||||| ||||
Sbjct 920 CCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGAATTGTTGACACTAGCA 979
Query 84219 TACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCT 84278
|| |||||||| | || || || || || |||||||| || |||||||||||||| |||
Sbjct 980 TATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCT 1039
Query 84279 TCTTGACCGAACTTGTAACCATAGTTTTG-TGAGACATTTTCTGTAGTTTCTCGGATTAG 84337
||||||||||| ||||||| || || | || |||||||||| ||||| | ||| |
Sbjct 1040 TCTTGACCGAATCTGTAACC-TACATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 1098
Query 84338 AGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAA-TACACC 84394
| ||| || || | ||||||||||| ||| |||||||| || ||||| ||||||
Sbjct 1099 ACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGAGAGCCGCCGAAGTACACC 1156
>seq31730
Length=297
Score = 226 bits (250), Expect = 3e-54
Identities = 217/277 (78%), Gaps = 1/277 (0%)
Strand=Plus/Minus
Query 84349 CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACA 84408
|||| ||||||||||| ||| |||||| | || |||||||||||||| || || ||||
Sbjct 276 CAAG-GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACA 218
Query 84409 TGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACG 84468
||||||| || |||||||||||||| || || |||||||| |||| |||| ||||||| |
Sbjct 217 TGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAG 158
Query 84469 TTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAA 84528
| || || || || || ||||| |||||||| ||| ||||| || | || || | |
Sbjct 157 TACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCA 98
Query 84529 GGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCA 84588
||| ||||||| || |||||||| ||||| || || |||||| ||||| || ||||
Sbjct 97 AGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCA 38
Query 84589 TACCGAGACGATATGAAAGTTCCCATTCACGACCCAT 84625
|||| ||||| | ||||||||| |||||||||||
Sbjct 37 TACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1
>seq31523
Length=225
Score = 167 bits (184), Expect = 3e-36
Identities = 172/225 (76%), Gaps = 0/225 (0%)
Strand=Plus/Minus
Query 84098 GAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAAT 84157
||| || || ||||| || || || ||||| ||||| | ||| | ||||| ||||| ||
Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166
Query 84158 GCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGC 84217
|| || || ||||||||||| | ||| ||||| | ||||||| ||||||||| |||
Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106
Query 84218 ATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277
||| |||||||| | || || || || || |||||||| || |||||||||||||| ||
Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46
Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGT 84322
||||||||||| ||||||| | || || ||||||||||
Sbjct 45 CTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 1
>seq77
Length=8408033
Score = 150 bits (166), Expect = 2e-31
Identities = 215/303 (71%), Gaps = 0/303 (0%)
Strand=Plus/Minus
Query 84548 TGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAG 84607
|||||| ||||| || || |||||| ||||| | | |||||| |||||| | |||
Sbjct 2698997 TGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAAACTAAG 2698938
Query 84608 TTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTG 84667
|||||| ||||||||||||||| | | |||||| | |||||| | |||| || |
Sbjct 2698937 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAATTAGCTC 2698878
Query 84668 ATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAA 84727
|||||| || || || |||| |||||| || | || ||||||| | || || || |
Sbjct 2698877 ATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTACATTGGGTAAAT 2698818
Query 84728 ATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTA 84787
||| | ||| ||||| ||| | ||||| | |||||| || || || |||||||| ||
Sbjct 2698817 ATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTGTTTCCATA 2698758
Query 84788 CATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAAC 84847
| ||||| | | | || | || ||||| |||||||| | ||| || ||| | |
Sbjct 2698757 AAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGAGGAGCAGCCAT 2698698
Query 84848 GAA 84850
|||
Sbjct 2698697 GAA 2698695
>seq203
Length=8626763
Score = 122 bits (134), Expect = 1e-22
Identities = 178/252 (71%), Gaps = 0/252 (0%)
Strand=Plus/Plus
Query 84411 TGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTT 84470
|| || |||| |||||||||||| || || || ||||| |||| |||| | ||||| |
Sbjct 3756301 TGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGCA 3756360
Query 84471 CCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGG 84530
| || || || || ||||| ||||| | || ||||| || | || || | | |
Sbjct 3756361 CTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAAG 3756420
Query 84531 AATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATA 84590
|| ||||||| || | |||||| ||||| || || |||||| ||||| || ||||||
Sbjct 3756421 AAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCATA 3756480
Query 84591 CCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAG 84650
|| ||||| | ||||||| | ||| |||||||||| | || ||| | ||||
Sbjct 3756481 CCTAGACGGAAACTAAGTTCCTACTCATAACCCATGTAACAAGCCACAACAAGTAAGAAG 3756540
Query 84651 TGAAAGACAACA 84662
|| | ||||||
Sbjct 3756541 TGTAGAACAACA 3756552
>seq134
Length=15115857
Score = 114 bits (126), Expect = 1e-20
Identities = 170/241 (71%), Gaps = 0/241 (0%)
Strand=Plus/Plus
Query 84622 CCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCAT 84681
|||||||| | | || ||| | |||||| | |||| || | |||||| | | |
Sbjct 3765711 CCATGTAACAAGTTACAACAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACTGTCGT 3765770
Query 84682 TATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAG 84741
| |||| |||||| || | | |||||||||||| || | || ||||| | ||| ||||
Sbjct 3765771 TGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGAGTAAAAATGCAAACCTATAG 3765830
Query 84742 CATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAG 84801
||| | |||| | | || || |||| || ||||| || || | ||||| ||||
Sbjct 3765831 TTGTAGGAGTAGGAATAATGCCATCATAAATAATATTGTTACCATAAAGTAGAGATCCAG 3765890
Query 84802 CGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGA 84861
| |||| || |||||| |||||||||||||| || ||| ||| ||| ||||| || |
Sbjct 3765891 AAATAGGCTTACAGATACCATCAATATCAACTGGAGGAGCAACAATGAAGGCAATAATAA 3765950
Query 84862 A 84862
|
Sbjct 3765951 A 3765951
>seq85
Length=5226098
Score = 95.1 bits (104), Expect = 1e-14
Identities = 114/155 (74%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||| ||| ||||| |||||||||||||| |||| |||||
Sbjct 1123199 GGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACAATTAATA 1123258
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104
| ||| |||| ||||| | ||||| ||| ||||| || | || ||||| ||
Sbjct 1123259 ATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTG 1123318
Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACC 84139
|| ||||| || || || ||||| ||||| | |||
Sbjct 1123319 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353
>seq31544
Length=164
Score = 93.3 bits (102), Expect = 5e-14
Identities = 81/101 (80%), Gaps = 0/101 (0%)
Strand=Plus/Minus
Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044
||||||||||| || |||||||| ||||| |||||||||||||| ||||||||||
Sbjct 111 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGATTAATA 52
Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGAC 84085
| ||| ||||||||||| | ||||| ||| ||||| ||
Sbjct 51 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAAC 11
>seq151
Length=2833985
Score = 84.2 bits (92), Expect = 2e-11
Identities = 87/113 (77%), Gaps = 2/113 (2%)
Strand=Plus/Minus
Query 84172 AAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAA 84231
||||||| | ||| ||||| | |||||| ||||||||| |||||| ||||||| |
Sbjct 2328123 AAGCAGCTAGGAAGAAGTGTAACGAACGAGAATTGTTGAAACTAGCATATAGGAAGATCA 2328064
Query 84232 GACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284
|| || || || || |||||||| || |||||||||||||| || |||||
Sbjct 2328063 ATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC--CTTGA 2328013
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571013841894080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |