Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq444 630 8e-176 seq31551 266 4e-66 seq31730 226 3e-54 seq31523 167 3e-36 seq77 150 2e-31 seq203 122 1e-22 seq134 114 1e-20 seq85 95.1 1e-14 seq31544 93.3 5e-14 seq151 84.2 2e-11 >seq444 Length=4271 Score = 630 bits (698), Expect = 8e-176 Identities = 725/973 (75%), Gaps = 2/973 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 |||||||| || || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 144 GGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATA 203 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| ||||| ||||| | |||||| ||| ||||| || | || ||||| || Sbjct 204 ATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGATTGGTTGAAATTG 263 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATGCCAACC 84164 || ||||| || || || ||||| || |||| ||| | ||||| ||||||||| || || Sbjct 264 AAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAACCAAATACCTACT 323 Query 84165 ACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGG 84224 || |||||||| || ||||| || || | ||||||| ||||||||| |||||| ||| Sbjct 324 ACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAACTAGCATATTGG 383 Query 84225 AAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 || || | || || || || ||||||||||| ||||| || |||||||| |||||||| Sbjct 384 AAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTTTCTTCTTCTTGC 443 Query 84285 CCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCTCGGATTAGAGAAGAA 84344 ||||| ||||||| | || || |||||||||| ||||| | ||| | | |||| Sbjct 444 CCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAA 503 Query 84345 GTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCC 84404 || || | ||||||||||| ||| || || | || |||||||||||||| || || Sbjct 504 GTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACACCAGCTACACCT 563 Query 84405 AACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTG 84464 ||||||||||| || |||||||| ||||| || || |||||||| |||| ||| ||||| Sbjct 564 AACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACAATCATAAAGTTG 623 Query 84465 AACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATAC 84524 || || || ||||| || || ||||| |||||||| ||| || || || | ||||| Sbjct 624 AAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGACCAATTGGATAG 683 Query 84525 ACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGA 84584 | | ||| ||||||| || |||||||| ||||| || || |||||| ||||| ||| Sbjct 684 ATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGA 743 Query 84585 CGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATC 84644 |||||||| ||||| | ||||||||| ||||||||||| ||| | | |||||| Sbjct 744 CGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAAGCTACACCAAGT 803 Query 84645 AGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAGCCATTCGTCCATACTT 84704 | ||||| | |||| |||| |||||| || || || ||||||||||| || | | Sbjct 804 AAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCATTCATCAACGGAT 863 Query 84705 GCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGAGGATGGAACTACGGCA 84764 || |||||||| || || || ||||| | |||||||| ||| | |||| | |||| Sbjct 864 GCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTAGGAATAATGGCA 923 Query 84765 CCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGGCTCACGGATACCGTCA 84824 || ||||| || ||||||||||| | ||||| |||| || || ||||| ||||| ||| Sbjct 924 CCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCACGAATACCATCA 983 Query 84825 ATATCAACTGGGGGTGCACCAACGAATGCAATGAT-GAAACAGACAGTGGCAGCAAGTAG 84883 ||||| ||||| || ||| ||| |||||| || || ||||||| ||| || | | || Sbjct 984 ATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA-AGTTGCGGTCAATAA 1042 Query 84884 AGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGTTGTTAGTGGAGGTGAC 84943 || || ||||| | | |||||||| |||| || | |||||| | |||| || | Sbjct 1043 GGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCAGTGCTAGTTAT 1102 Query 84944 CCAATCACAGAAG 84956 ||| | ||||||| Sbjct 1103 CCAGTTACAGAAG 1115 >seq31551 Length=1713 Score = 266 bits (294), Expect = 4e-66 Identities = 313/418 (75%), Gaps = 9/418 (2%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| ||||| |||| Sbjct 740 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTAGCACGGTTAATG 799 Query 84045 ACATCGGCCCAGGTATTGACAACACGG----TT--TTGGCTATCGACAAGACTCTGATTG 84098 | ||| ||||||||||| | ||| | || ||| ||||| || | | || ||| Sbjct 800 AGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGACTATCAACTACAGATTGGTTG 859 Query 84099 AAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAATG 84158 || || || || || | | ||| ||||||||||||| ||| | ||||| ||||| || Sbjct 860 AAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATACCTAAAGCAGTGAACCAGATA 919 Query 84159 CCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCA 84218 || || || ||||||||||| | ||| || || | |||||| |||||||| |||| Sbjct 920 CCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGAATTGTTGACACTAGCA 979 Query 84219 TACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCT 84278 || |||||||| | || || || || || |||||||| || |||||||||||||| ||| Sbjct 980 TATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCT 1039 Query 84279 TCTTGACCGAACTTGTAACCATAGTTTTG-TGAGACATTTTCTGTAGTTTCTCGGATTAG 84337 ||||||||||| ||||||| || || | || |||||||||| ||||| | ||| | Sbjct 1040 TCTTGACCGAATCTGTAACC-TACATTAGCAGATTCATTTTCTGTGGTTTCCCTGATCAA 1098 Query 84338 AGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAA-TACACC 84394 | ||| || || | ||||||||||| ||| |||||||| || ||||| |||||| Sbjct 1099 ACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGAGAGCCGCCGAAGTACACC 1156 >seq31730 Length=297 Score = 226 bits (250), Expect = 3e-54 Identities = 217/277 (78%), Gaps = 1/277 (0%) Strand=Plus/Minus Query 84349 CAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAATACACCAGCAACTCCCAACA 84408 |||| ||||||||||| ||| |||||| | || |||||||||||||| || || |||| Sbjct 276 CAAG-GAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACA 218 Query 84409 TGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACG 84468 ||||||| || |||||||||||||| || || |||||||| |||| |||| ||||||| | Sbjct 217 TGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAG 158 Query 84469 TTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAA 84528 | || || || || || ||||| |||||||| ||| ||||| || | || || | | Sbjct 157 TACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCA 98 Query 84529 GGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCA 84588 ||| ||||||| || |||||||| ||||| || || |||||| ||||| || |||| Sbjct 97 AGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCA 38 Query 84589 TACCGAGACGATATGAAAGTTCCCATTCACGACCCAT 84625 |||| ||||| | ||||||||| ||||||||||| Sbjct 37 TACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1 >seq31523 Length=225 Score = 167 bits (184), Expect = 3e-36 Identities = 172/225 (76%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 84098 GAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCAAACCAAAT 84157 ||| || || ||||| || || || ||||| ||||| | ||| | ||||| ||||| || Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166 Query 84158 GCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGC 84217 || || || ||||||||||| | ||| ||||| | ||||||| ||||||||| ||| Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106 Query 84218 ATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTC 84277 ||| |||||||| | || || || || || |||||||| || |||||||||||||| || Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46 Query 84278 TTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGT 84322 ||||||||||| ||||||| | || || |||||||||| Sbjct 45 CTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 1 >seq77 Length=8408033 Score = 150 bits (166), Expect = 2e-31 Identities = 215/303 (71%), Gaps = 0/303 (0%) Strand=Plus/Minus Query 84548 TGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATACCGAGACGATATGAAAG 84607 |||||| ||||| || || |||||| ||||| | | |||||| |||||| | ||| Sbjct 2698997 TGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAAACTAAG 2698938 Query 84608 TTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTG 84667 |||||| ||||||||||||||| | | |||||| | |||||| | |||| || | Sbjct 2698937 TTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAATTAGCTC 2698878 Query 84668 ATAAGGTCCACCATTATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAA 84727 |||||| || || || |||| |||||| || | || ||||||| | || || || | Sbjct 2698877 ATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTACATTGGGTAAAT 2698818 Query 84728 ATGTAGACCAATAGCATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTA 84787 ||| | ||| ||||| ||| | ||||| | |||||| || || || |||||||| || Sbjct 2698817 ATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTGTTTCCATA 2698758 Query 84788 CATGAGAGAACCAGCGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAAC 84847 | ||||| | | | || | || ||||| |||||||| | ||| || ||| | | Sbjct 2698757 AAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGAGGAGCAGCCAT 2698698 Query 84848 GAA 84850 ||| Sbjct 2698697 GAA 2698695 >seq203 Length=8626763 Score = 122 bits (134), Expect = 1e-22 Identities = 178/252 (71%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 84411 TGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAGACAAGCATGTAGTTGAACGTT 84470 || || |||| |||||||||||| || || || ||||| |||| |||| | ||||| | Sbjct 3756301 TGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGCA 3756360 Query 84471 CCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCTTGCCCGAAAGGATACACAAGG 84530 | || || || || ||||| ||||| | || ||||| || | || || | | | Sbjct 3756361 CTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAAG 3756420 Query 84531 AATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCAACACAGATCCATGGACGCATA 84590 || ||||||| || | |||||| ||||| || || |||||| ||||| || |||||| Sbjct 3756421 AAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCATA 3756480 Query 84591 CCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAAGCAAATGCACCAATCAGGAAG 84650 || ||||| | ||||||| | ||| |||||||||| | || ||| | |||| Sbjct 3756481 CCTAGACGGAAACTAAGTTCCTACTCATAACCCATGTAACAAGCCACAACAAGTAAGAAG 3756540 Query 84651 TGAAAGACAACA 84662 || | |||||| Sbjct 3756541 TGTAGAACAACA 3756552 >seq134 Length=15115857 Score = 114 bits (126), Expect = 1e-20 Identities = 170/241 (71%), Gaps = 0/241 (0%) Strand=Plus/Plus Query 84622 CCATGTAAGCAAATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCAT 84681 |||||||| | | || ||| | |||||| | |||| || | |||||| | | | Sbjct 3765711 CCATGTAACAAGTTACAACAAGTAAGAAGTGTAGAACAATTAGCTCATAAGGACTGTCGT 3765770 Query 84682 TATATAGCCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAG 84741 | |||| |||||| || | | |||||||||||| || | || ||||| | ||| |||| Sbjct 3765771 TGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGAGTAAAAATGCAAACCTATAG 3765830 Query 84742 CATTAGAGGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAG 84801 ||| | |||| | | || || |||| || ||||| || || | ||||| |||| Sbjct 3765831 TTGTAGGAGTAGGAATAATGCCATCATAAATAATATTGTTACCATAAAGTAGAGATCCAG 3765890 Query 84802 CGACTGGCTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGA 84861 | |||| || |||||| |||||||||||||| || ||| ||| ||| ||||| || | Sbjct 3765891 AAATAGGCTTACAGATACCATCAATATCAACTGGAGGAGCAACAATGAAGGCAATAATAA 3765950 Query 84862 A 84862 | Sbjct 3765951 A 3765951 >seq85 Length=5226098 Score = 95.1 bits (104), Expect = 1e-14 Identities = 114/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||| ||| ||||| |||||||||||||| |||| ||||| Sbjct 1123199 GGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTAGCACAATTAATA 1123258 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGACTCTGATTGAAGTTA 84104 | ||| |||| ||||| | ||||| ||| ||||| || | || ||||| || Sbjct 1123259 ATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGATTGGTTGAAATTG 1123318 Query 84105 AATCCATTCAGATTAAATGCCATGGTGCTAACACC 84139 || ||||| || || || ||||| ||||| | ||| Sbjct 1123319 AAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353 >seq31544 Length=164 Score = 93.3 bits (102), Expect = 5e-14 Identities = 81/101 (80%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 83985 GGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGCCCGGCACGATTAAGT 84044 ||||||||||| || |||||||| ||||| |||||||||||||| |||||||||| Sbjct 111 GGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGATTAATA 52 Query 84045 ACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGAC 84085 | ||| ||||||||||| | ||||| ||| ||||| || Sbjct 51 ATATCAGCCCAGGTATTAATTACACGACCTTGACTATCAAC 11 >seq151 Length=2833985 Score = 84.2 bits (92), Expect = 2e-11 Identities = 87/113 (77%), Gaps = 2/113 (2%) Strand=Plus/Minus Query 84172 AAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTGAAGGAAGCATACTGGAAGATAA 84231 ||||||| | ||| ||||| | |||||| ||||||||| |||||| ||||||| | Sbjct 2328123 AAGCAGCTAGGAAGAAGTGTAACGAACGAGAATTGTTGAAACTAGCATATAGGAAGATCA 2328064 Query 84232 GACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAAGTTTCCTCTTCTTGA 84284 || || || || || |||||||| || |||||||||||||| || ||||| Sbjct 2328063 ATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC--CTTGA 2328013 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571013841894080