Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_016656.1
Length=45890
Score E
Sequences producing significant alignments: (Bits) Value
seq444 506 6e-139
seq31551 201 3e-47
seq31730 152 2e-32
seq34854 141 3e-29
seq31523 132 1e-26
seq85 116 1e-21
seq203 96.9 1e-15
seq77 96.9 1e-15
>seq444
Length=4271
Score = 506 bits (560), Expect = 6e-139
Identities = 702/983 (71%), Gaps = 0/983 (0%)
Strand=Plus/Minus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|| ||| | ||| | || || ||||| |||||||| || | |||||||| || || |
Sbjct 1114 TTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 1055
Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGTTTTATACTTGCCTTCATCGCAGCACCG 25921
||||| || |||| | | || ||| | |||||| | || ||||| || || ||
Sbjct 1054 ATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCT 995
Query 25922 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 25981
|| |||||||| ||||| || ||||| || ||||| || || | | ||||||||||||
Sbjct 994 CCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAAT 935
Query 25982 ATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGATC 26041
|| || || || || | | || | ||| || || ||| | ||||||||||| |||
Sbjct 934 ATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATC 875
Query 26042 TGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATTATC 26101
|||||||||| | | || || ||||||||||| ||||| || ||| |||| ||| |
Sbjct 874 TGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTT 815
Query 26102 TTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGGGAACTATCTTACAGA 26161
| ||||| ||| | || ||||| ||| || | |||||||||| || | |
Sbjct 814 CTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGT 755
Query 26162 CTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCGCAGCTCTCGCA 26221
|| || ||| | || ||||| |||||||||| |||| || | | || || ||
Sbjct 754 CTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCT 695
Query 26222 GTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGCCTCTTGGTATC 26281
|| ||||| | ||||| | || || || |||||| |||||| |||||||| || |||
Sbjct 694 GTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATC 635
Query 26282 TCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATACTCATGCACCCA 26341
||||||||||| ||||||||| | |||||||| || || || || || || |||||||||
Sbjct 634 TCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCA 575
Query 26342 TTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTGCTATGCACGGA 26401
|| || ||| ||||| ||||| || ||||| || | ||||| ||||||||| ||
Sbjct 574 TTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGT 515
Query 26402 AGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCACAGAATTATGGC 26461
||||| ||||| | || ||||| ||||| | | || ||| | ||
Sbjct 514 TCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGT 455
Query 26462 TATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGG 26521
|| | || |||||||| ||||| || || || ||||| ||||| ||||| || |||||
Sbjct 454 TACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGC 395
Query 26522 AGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCT 26581
|||| ||||| || ||||| ||||| || || |||||| | |||||||| | ||
Sbjct 394 CGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCG 335
Query 26582 ACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAAC 26641
|||||||||| || || || ||| | || || | ||||| | || ||||| || |||
Sbjct 334 GCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAAC 275
Query 26642 CTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGATAATACCTACA 26701
||||||||||| || || ||||| |||||||| ||| | | ||| | || |||
Sbjct 274 CTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACT 215
Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761
||||||||| | | ||||| |||||||| || | ||||||||||| || |||||||||
Sbjct 214 TGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 155
Query 26762 CATAACTTTCCACTTGACTTAGC 26784
|| ||||| || || ||| ||||
Sbjct 154 CACAACTTCCCTCTAGACCTAGC 132
>seq31551
Length=1713
Score = 201 bits (222), Expect = 3e-47
Identities = 239/323 (74%), Gaps = 6/323 (2%)
Strand=Plus/Minus
Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527
|| || ||||| ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct 1050 TTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 991
Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587
|| || || ||||| ||| | || || ||||| | |||||||| || ||| |||||
Sbjct 990 ATCTTCCAATATGCTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGG 931
Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647
|| || || || || ||| | || || | ||||| |||| ||||| ||| || ||||
Sbjct 930 CCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAAC 871
Query 26648 GGTTTTAACTTTAACCAGTCAGTAGTAGAT-GTTAATGGAAAGAT-----AATACCTACA 26701
||||| || || ||||| || ||||| ||| || || | |||| | ||| |||
Sbjct 870 GGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACC 811
Query 26702 TGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACGAGCGTAATGCT 26761
||||||||| | | ||||| |||||||| || | ||||||||||| || |||||||||
Sbjct 810 TGGGCTGATCTCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCT 751
Query 26762 CATAACTTTCCACTTGACTTAGC 26784
|||||||| || || ||| ||||
Sbjct 750 CATAACTTCCCCCTAGACCTAGC 728
>seq31730
Length=297
Score = 152 bits (168), Expect = 2e-32
Identities = 189/259 (73%), Gaps = 0/259 (0%)
Strand=Plus/Plus
Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201
|||||||||| || | | || || ||| | || ||||| |||||||||| |||| |
Sbjct 11 AGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATATTCAGCTC 70
Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261
| | | || ||| || || ||||| | || || | || ||||| |||||| ||
Sbjct 71 CTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGTTTTTCTG 130
Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321
|||| |||||||| || || ||||||||||| ||||| ||| | |||||||| || || |
Sbjct 131 ATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAGGCTGAGC 190
Query 26322 ATAATATACTCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTC 26381
| || || || ||||||||||| || ||| || || ||||| || ||||| || | |
Sbjct 191 ACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGCGGCTCCC 250
Query 26382 TTTTCGCTGCTATGCACGG 26400
| ||| ||||||||| ||
Sbjct 251 TATTCAGTGCTATGCATGG 269
>seq34854
Length=328
Score = 141 bits (156), Expect = 3e-29
Identities = 214/299 (72%), Gaps = 4/299 (1%)
Strand=Plus/Plus
Query 25802 TTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTCGGGGTGCTT 25861
|| ||| | ||| | || || || || |||||||| || | |||||||| || || |
Sbjct 32 TTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTG 91
Query 25862 ATGATACCCTGCTTACTCGCAGCCACTACATGT-TTTATACTTGCCTTCATCGCAGCACC 25920
||||| || |||| | | || ||| | ||| ||||| |||||||||| || || ||
Sbjct 92 ATGATCCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCATTGCTGCTCC 150
Query 25921 GCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAA 25980
|| |||||||| ||||| || ||||| || ||||| || || || | || ||||||||
Sbjct 151 TCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTTATGGAAACAA 210
Query 25981 TATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTTTTACCCGAT 26040
||| || || || || | | || | ||| || || || | ||||||||||| ||
Sbjct 211 TATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATTTTTACCCAAT 270
Query 26041 CTGGGAAGCTGGCA-CACTGGACGAGTGGCTATACAATGGCGGACCATATCAACTCATT 26098
|||||||| |||| | | || || ||| ||||||| ||||| || ||| | || |||
Sbjct 271 ATGGGAAGC-GGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATGAGCTAATT 328
>seq31523
Length=225
Score = 132 bits (146), Expect = 1e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Plus
Query 26468 TTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGGGAGATTA 26527
|| || ||||| ||||| || |||||||| || ||||| || || || ||||| ||||
Sbjct 34 TTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTG 93
Query 26528 ATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATTTCTTTCTTGCTACTTGG 26587
|| || || ||||| ||||| || || |||||| | || ||||| || ||| |||||
Sbjct 94 ATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTAGCTGCTTGG 153
Query 26588 CCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAATGGCATTTAACCTAAAT 26647
|| || || || || ||| | || || | |||||| |||| ||||| || |||||||||
Sbjct 154 CCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTCAACCTAAAT 213
Query 26648 GGTTTTAACTT 26658
||||| || ||
Sbjct 214 GGTTTCAATTT 224
>seq85
Length=5226098
Score = 116 bits (128), Expect = 1e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Minus
Query 26618 GGTATCTGCACAATGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGAT 26677
|||||| |||| ||||| || |||||||||||||| || || ||||| || ||||| |||
Sbjct 1123353 GGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGAT 1123294
Query 26678 GTTAATGGAAAGATAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTT 26737
| | || |||| |||||||| |||| | | || | |||||||| || |
Sbjct 1123293 AGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATG 1123234
Query 26738 GAAGTTATGCACGAGCGTAATGCTCATAACTTTCCACTTGACTTAGC 26784
||||||||||| || |||||||||||||||| || || ||| ||||
Sbjct 1123233 GAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187
>seq203
Length=8626763
Score = 96.9 bits (106), Expect = 1e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 26142 AGTGGGAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCAC 26201
||| |||||| || | | ||||| ||| | || ||||| ||||||||||| |||| |
Sbjct 3756505 AGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTCAGCTC 3756446
Query 26202 CACTATCCGCAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTG 26261
| | | | ||| || || ||||| | || || | || ||||| || ||| ||
Sbjct 3756445 CGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATG 3756386
Query 26262 ATGGAATGCCTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAAC 26321
||| |||||||| || || || || |||| || || ||| | ||||||||||| || |
Sbjct 3756385 ATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTATTCCAAGCTGAGC 3756326
Query 26322 ATAATATACTCATGCACCCATTCCAT 26347
| || || || ||| | ||||| |||
Sbjct 3756325 ACAACATCCTTATGTATCCATTGCAT 3756300
>seq77
Length=8408033
Score = 96.9 bits (106), Expect = 1e-15
Identities = 199/296 (67%), Gaps = 0/296 (0%)
Strand=Plus/Plus
Query 25907 TTCATCGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTA 25966
||||| || || || || ||||||| ||||| || || | || ||||| | || ||
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 25967 ATGTACGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTA 26026
| || ||||||||||| || || || || | | || | ||| || || || |
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814
Query 26027 CATTTTTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCA 26086
||| ||||||| || | |||||| || | || || ||| ||||||| ||||| ||
Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874
Query 26087 TATCAACTCATTATCTTCCACTTCTTAATAGGAGTAGCAGCATATGCAGGGAGACAGTGG 26146
||| | || ||| | | ||||||||| | || ||||| || || | |||||
Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934
Query 26147 GAACTATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACC 26202
||||| || | ||||| ||| | | ||||| |||||||||| |||| ||
Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCC 2698990
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146663019330624
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |