Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_016657.1
Length=47055
Score E
Sequences producing significant alignments: (Bits) Value
seq444 547 2e-151
seq31730 214 5e-51
seq31551 192 2e-44
seq77 181 3e-41
seq34854 161 3e-35
seq203 152 2e-32
seq31523 125 2e-24
seq85 93.3 1e-14
seq31544 91.5 4e-14
>seq444
Length=4271
Score = 547 bits (606), Expect = 2e-151
Identities = 719/996 (72%), Gaps = 0/996 (0%)
Strand=Plus/Plus
Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019
|| |||| |||| |||||||| || ||||||||||| || ||||| ||||||||||||||
Sbjct 119 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 178
Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079
||| || | || |||||||||| ||| ||||||||||| | || | ||| |
Sbjct 179 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 238
Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139
|||||| ||||| || ||||| || || || || || || ||||||||||| | ||
Sbjct 239 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 298
Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199
| ||| |||| ||| || | || |||||||| || | ||||||||||||| ||
Sbjct 299 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 358
Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259
||| || || |||||||| ||||| || | || ||||| || || ||||| || ||
Sbjct 359 AGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTAC 418
Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319
|||||| || || ||||||||||| |||||| | || || | || ||||||| |
Sbjct 419 AATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 478
Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379
|| ||||| | || | ||||| || | || ||||||||| || | |
Sbjct 479 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGA 538
Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439
|| |||||||| || || ||||| | ||| || || || |||||||| || ||||| ||
Sbjct 539 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 598
Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499
||||| || |||| |||||| |||||||| || || || || |||||||||||||||||
Sbjct 599 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 658
Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559
||||| || || |||| || |||| ||||| |||||| || ||||||||||| ||
Sbjct 659 AAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGC 718
Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619
|||||| || ||| ||||| || | |||||| || | ||||||||||||| | ||
Sbjct 719 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 778
Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679
|||| ||| | | ||||| | |||||| | ||||| |||| ||| || || ||
Sbjct 779 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCC 838
Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739
||| |||| ||| || || | || ||||||||||||||||||||| || || | || ||
Sbjct 839 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAAT 898
Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799
|| || | || | || || || || || || |||||||| || || | | |||
Sbjct 899 AGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCC 958
Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859
|| ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || |
Sbjct 959 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1018
Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919
||| | | ||| || || | | ||||||||| | || |||||||| || | ||
Sbjct 1019 AAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1078
Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955
|| ||||| | || || || | ||||| ||| ||
Sbjct 1079 AAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1114
>seq31730
Length=297
Score = 214 bits (236), Expect = 5e-51
Identities = 208/268 (78%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416
|| ||||||||| ||||| | || |||||||| || || || || | ||| || ||
Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210
Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476
|| ||||||||||| ||||| || ||||| || |||| ||| || |||||||| || |||
Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150
Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536
|| || ||||||||||||||||| ||||| ||||| |||| ||||||| ||||| |||
Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90
Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGT 36596
||| || ||||||||||| |||||||| || ||| ||||| || | |||||| ||
Sbjct 89 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 30
Query 36597 CTATAACTAAGTTCCCATTGTCGTCCCA 36624
| ||||||||||||| | || ||||
Sbjct 29 CGGAAACTAAGTTCCCACTCACGACCCA 2
>seq31551
Length=1713
Score = 192 bits (212), Expect = 2e-44
Identities = 248/341 (73%), Gaps = 6/341 (2%)
Strand=Plus/Plus
Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023
||| |||| |||||||| || |||||||| || || ||||| |||||||||||||||||
Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778
Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT-----TGGGACGACTCTTCCGTTGG 36078
|| | || |||||||||| | |||||||| || | | ||| || | |||
Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838
Query 36079 A-ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACT 36137
|||||| || || || ||||| || || ||||| | | ||||||||| ||| |
Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898
Query 36138 CCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTG 36197
|| | ||| || | ||| || | || ||||||||||| ||||||||||||||
Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958
Query 36198 CGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 36257
|| ||| || | |||||||| |||||||| | || ||||| || |||||||| ||
Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018
Query 36258 ACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCC 36298
|| || ||||| || ||||||||||| |||||| | || ||
Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACC 1059
>seq77
Length=8408033
Score = 181 bits (200), Expect = 3e-41
Identities = 262/370 (71%), Gaps = 0/370 (0%)
Strand=Plus/Minus
Query 36475 AAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATA 36534
|||| | |||||||||| |||| | ||||| || |||| ||||||| ||||| |
Sbjct 2699070 AAATTTCTAGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAA 2699011
Query 36535 CAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTA 36594
|| || || ||||||||| |||||||| || ||| ||||| | | ||||||||
Sbjct 2699010 CAATAATAGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTA 2698951
Query 36595 GTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGA 36654
| | | ||||||||||||| | || |||| |||| | | ||||| | ||||| |
Sbjct 2698950 GACGAAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTA 2698891
Query 36655 ACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCC 36714
||||| || | ||| || || ||||| |||||||| || || | | || ||||||
Sbjct 2698890 GTACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCT 2698831
Query 36715 AGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGA 36774
| |||||||| | || | ||| || || || | ||| | || || || ||||| |
Sbjct 2698830 ACATTGGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAA 2698771
Query 36775 TGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGG 36834
| ||||||||||| |||| | || || | ||| | ||||||||||| ||||| | |
Sbjct 2698770 TATTGTTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTG 2698711
Query 36835 GAGGCGCAGC 36844
|||| |||||
Sbjct 2698710 GAGGAGCAGC 2698701
>seq34854
Length=328
Score = 161 bits (178), Expect = 3e-35
Identities = 214/297 (72%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 36659 AATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 36718
||| || | ||| || || ||||| |||||||| || || | | ||| |||||||| ||
Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATAT 269
Query 36719 TGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTT 36778
|||||| || || | ||| || || || | || | || || || ||||| || ||
Sbjct 268 TGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATT 209
Query 36779 GTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 36838
||||||||| |||| | ||| || ||||| |||||||||||||| ||||| || |||||
Sbjct 208 GTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGG 149
Query 36839 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 36898
||||||| || ||||| | |||| | | ||| || || | | ||||||||| |
Sbjct 148 AGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 89
Query 36899 TACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955
|| |||||||| || | || || ||||| | || || || | ||||| ||| ||
Sbjct 88 AACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32
>seq203
Length=8626763
Score = 152 bits (168), Expect = 2e-32
Identities = 155/202 (77%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 36410 ATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGT 36469
||| || |||| ||||||||| ||||| || || || || |||| ||| ||||||||||
Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359
Query 36470 CCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAA 36529
| ||||| || ||||||||| ||||| | || || ||||| |||| ||||||| ||
Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419
Query 36530 GAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCAT 36589
||| |||||| || | |||||| || |||||||| || ||| ||||| || | |||
Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479
Query 36590 ACCTAGTCTATAACTAAGTTCC 36611
|||||| | |||||||||||
Sbjct 3756480 ACCTAGACGGAAACTAAGTTCC 3756501
>seq31523
Length=225
Score = 125 bits (138), Expect = 2e-24
Identities = 158/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 36098 GAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 36157
||| || || || || || || |||||||||||| || || | ||| || | ||| ||
Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166
Query 36158 GCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGC 36217
| || ||||||||||| |||||||| |||||| || ||| || || |||||
Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106
Query 36218 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 36277
||| |||||||| | || ||||| || |||||||| || || || ||||| || |||||
Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46
Query 36278 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 36314
||||| |||||| | || || | || |||||||
Sbjct 45 CTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCA 9
>seq85
Length=5226098
Score = 93.3 bits (102), Expect = 1e-14
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032
|||||||| || |||||||| || || |||| ||||||||||||||||| || | ||
Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246
Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092
|||| |||| ||| ||| |||| || | || | || | |||||| || ||
Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306
Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 36131
|| ||||| || || || || || || ||||||||||||
Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 1123345
>seq31544
Length=164
Score = 91.5 bits (100), Expect = 4e-14
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023
||| |||| |||||||| || |||||||| || || ||||| |||||||||||||||||
Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73
Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058
|| | | ||||| |||| ||| |||||||| ||
Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGT 38
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 150389408965104
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