Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq444 547 2e-151 seq31730 214 5e-51 seq31551 192 2e-44 seq77 181 3e-41 seq34854 161 3e-35 seq203 152 2e-32 seq31523 125 2e-24 seq85 93.3 1e-14 seq31544 91.5 4e-14 >seq444 Length=4271 Score = 547 bits (606), Expect = 2e-151 Identities = 719/996 (72%), Gaps = 0/996 (0%) Strand=Plus/Plus Query 35960 AGACTCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTC 36019 || |||| |||| |||||||| || ||||||||||| || ||||| |||||||||||||| Sbjct 119 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 178 Query 36020 CATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGA 36079 ||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 179 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACT 238 Query 36080 ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCC 36139 |||||| ||||| || ||||| || || || || || || ||||||||||| | || Sbjct 239 ATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACC 298 Query 36140 CATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCG 36199 | ||| |||| ||| || | || |||||||| || | ||||||||||||| || Sbjct 299 TAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACG 358 Query 36200 GCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAAC 36259 ||| || || |||||||| ||||| || | || ||||| || || ||||| || || Sbjct 359 AGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTAC 418 Query 36260 AATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCC 36319 |||||| || || ||||||||||| |||||| | || || | || ||||||| | Sbjct 419 AATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTC 478 Query 36320 AGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 36379 || ||||| | || | ||||| || | || ||||||||| || | | Sbjct 479 TGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGA 538 Query 36380 TCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTC 36439 || |||||||| || || ||||| | ||| || || || |||||||| || ||||| || Sbjct 539 GCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTC 598 Query 36440 TGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGA 36499 ||||| || |||| |||||| |||||||| || || || || ||||||||||||||||| Sbjct 599 AGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGA 658 Query 36500 GAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGC 36559 ||||| || || |||| || |||| ||||| |||||| || ||||||||||| || Sbjct 659 AAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGC 718 Query 36560 TGAATAAGCTACACATATCCACGGCCTCATACCTAGTCTATAACTAAGTTCCCATTGTCG 36619 |||||| || ||| ||||| || | |||||| || | ||||||||||||| | || Sbjct 719 TGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACG 778 Query 36620 TCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCC 36679 |||| ||| | | ||||| | |||||| | ||||| |||| ||| || || || Sbjct 779 ACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCC 838 Query 36680 GTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGAT 36739 ||| |||| ||| || || | || ||||||||||||||||||||| || || | || || Sbjct 839 GTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAAT 898 Query 36740 TGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTTGTTTCCATAGAGTAATGCTCC 36799 || || | || | || || || || || || |||||||| || || | | ||| Sbjct 899 AGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCC 958 Query 36800 TGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAA 36859 || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || | Sbjct 959 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1018 Query 36860 AAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATA 36919 ||| | | ||| || || | | ||||||||| | || |||||||| || | || Sbjct 1019 AAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1078 Query 36920 GAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || ||||| | || || || | ||||| ||| || Sbjct 1079 AAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1114 >seq31730 Length=297 Score = 214 bits (236), Expect = 5e-51 Identities = 208/268 (78%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 36357 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 36416 || ||||||||| ||||| | || |||||||| || || || || | ||| || || Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210 Query 36417 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 36476 || ||||||||||| ||||| || ||||| || |||| ||| || |||||||| || ||| Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150 Query 36477 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 36536 || || ||||||||||||||||| ||||| ||||| |||| ||||||| ||||| ||| Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90 Query 36537 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTAGT 36596 ||| || ||||||||||| |||||||| || ||| ||||| || | |||||| || Sbjct 89 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 30 Query 36597 CTATAACTAAGTTCCCATTGTCGTCCCA 36624 | ||||||||||||| | || |||| Sbjct 29 CGGAAACTAAGTTCCCACTCACGACCCA 2 >seq31551 Length=1713 Score = 192 bits (212), Expect = 2e-44 Identities = 248/341 (73%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||||||| || |||||||| || || ||||| ||||||||||||||||| Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT-----TGGGACGACTCTTCCGTTGG 36078 || | || |||||||||| | |||||||| || | | ||| || | ||| Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838 Query 36079 A-ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACT 36137 |||||| || || || ||||| || || ||||| | | ||||||||| ||| | Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898 Query 36138 CCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTG 36197 || | ||| || | ||| || | || ||||||||||| |||||||||||||| Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958 Query 36198 CGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 36257 || ||| || | |||||||| |||||||| | || ||||| || |||||||| || Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018 Query 36258 ACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCC 36298 || || ||||| || ||||||||||| |||||| | || || Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACC 1059 >seq77 Length=8408033 Score = 181 bits (200), Expect = 3e-41 Identities = 262/370 (71%), Gaps = 0/370 (0%) Strand=Plus/Minus Query 36475 AAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATA 36534 |||| | |||||||||| |||| | ||||| || |||| ||||||| ||||| | Sbjct 2699070 AAATTTCTAGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAA 2699011 Query 36535 CAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATACCTA 36594 || || || ||||||||| |||||||| || ||| ||||| | | |||||||| Sbjct 2699010 CAATAATAGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTA 2698951 Query 36595 GTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAGTGGA 36654 | | | ||||||||||||| | || |||| |||| | | ||||| | ||||| | Sbjct 2698950 GACGAAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTA 2698891 Query 36655 ACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCC 36714 ||||| || | ||| || || ||||| |||||||| || || | | || |||||| Sbjct 2698890 GTACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCT 2698831 Query 36715 AGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGA 36774 | |||||||| | || | ||| || || || | ||| | || || || ||||| | Sbjct 2698830 ACATTGGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAA 2698771 Query 36775 TGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGG 36834 | ||||||||||| |||| | || || | ||| | ||||||||||| ||||| | | Sbjct 2698770 TATTGTTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTG 2698711 Query 36835 GAGGCGCAGC 36844 |||| ||||| Sbjct 2698710 GAGGAGCAGC 2698701 >seq34854 Length=328 Score = 161 bits (178), Expect = 3e-35 Identities = 214/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 36659 AATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 36718 ||| || | ||| || || ||||| |||||||| || || | | ||| |||||||| || Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATAT 269 Query 36719 TGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAGATGATGTT 36778 |||||| || || | ||| || || || | || | || || || ||||| || || Sbjct 268 TGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATT 209 Query 36779 GTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 36838 ||||||||| |||| | ||| || ||||| |||||||||||||| ||||| || ||||| Sbjct 208 GTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGG 149 Query 36839 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 36898 ||||||| || ||||| | |||| | | ||| || || | | ||||||||| | Sbjct 148 AGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 89 Query 36899 TACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 36955 || |||||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 88 AACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32 >seq203 Length=8626763 Score = 152 bits (168), Expect = 2e-32 Identities = 155/202 (77%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 36410 ATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGT 36469 ||| || |||| ||||||||| ||||| || || || || |||| ||| |||||||||| Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359 Query 36470 CCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAA 36529 | ||||| || ||||||||| ||||| | || || ||||| |||| ||||||| || Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419 Query 36530 GAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCAT 36589 ||| |||||| || | |||||| || |||||||| || ||| ||||| || | ||| Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479 Query 36590 ACCTAGTCTATAACTAAGTTCC 36611 |||||| | ||||||||||| Sbjct 3756480 ACCTAGACGGAAACTAAGTTCC 3756501 >seq31523 Length=225 Score = 125 bits (138), Expect = 2e-24 Identities = 158/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 36098 GAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 36157 ||| || || || || || || |||||||||||| || || | ||| || | ||| || Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166 Query 36158 GCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGC 36217 | || ||||||||||| |||||||| |||||| || ||| || || ||||| Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106 Query 36218 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 36277 ||| |||||||| | || ||||| || |||||||| || || || ||||| || ||||| Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46 Query 36278 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 36314 ||||| |||||| | || || | || ||||||| Sbjct 45 CTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCA 9 >seq85 Length=5226098 Score = 93.3 bits (102), Expect = 1e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 35973 GCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 36032 |||||||| || |||||||| || || |||| ||||||||||||||||| || | || Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246 Query 36033 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 36092 |||| |||| ||| ||| |||| || | || | || | |||||| || || Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306 Query 36093 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 36131 || ||||| || || || || || || |||||||||||| Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 1123345 >seq31544 Length=164 Score = 91.5 bits (100), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 35964 TCAGCAGCTGCTAGGTCAAGTGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 36023 ||| |||| |||||||| || |||||||| || || ||||| ||||||||||||||||| Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73 Query 36024 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 36058 || | | ||||| |||| ||| |||||||| || Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGT 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150389408965104