Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq444 558 1e-154 seq31551 210 7e-50 seq31730 199 1e-46 seq34854 167 7e-37 seq31523 147 7e-31 seq203 127 6e-25 seq77 116 1e-21 seq85 95.1 4e-15 seq31544 91.5 4e-14 >seq444 Length=4271 Score = 558 bits (618), Expect = 1e-154 Identities = 724/996 (73%), Gaps = 6/996 (1%) Strand=Plus/Plus Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244 |||| |||| ||||| || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct 122 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 181 Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304 ||||||||| |||||||| | | ||| |||||||| || | | || | || Sbjct 182 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 241 Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364 ||| ||||| || ||||| || || || || || || ||||||||||| || || | Sbjct 242 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 301 Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424 || |||| ||| || | || || ||||||| || | ||||||||||||| ||| Sbjct 302 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 361 Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484 |||||| || |||||||| ||||| || | || ||||| || || ||||| || ||||| Sbjct 362 ATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 421 Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544 ||| || |||||||| ||||| |||||| | || || | || ||| | | || Sbjct 422 GTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 481 Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604 ||||| | || | |||||| || | |||||||||||| || | | || Sbjct 482 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCC 541 Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664 |||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || || Sbjct 542 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 601 Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724 ||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| || Sbjct 602 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 661 Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783 ||||||||| || | || || | || || || | ||| || || ||||| || |||| Sbjct 662 ACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGT-CGCAGCTGCAACAGGAGCTG 720 Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843 ||||||| || |||||| || ||||| || | | | ||||||||||||| | || | Sbjct 721 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 780 Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903 ||| ||| || | ||||| | ||||| | || | |||| || || || || | Sbjct 781 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 840 Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961 |||| ||||||||||| | ||| || ||||||||||| || || || || || ||||| Sbjct 841 TGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATTGGGTAAAAATGCAATCCAAT 898 Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021 || || | || | || ||| || || || || |||||||| || || |||||||| Sbjct 899 AGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCC 958 Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081 | || |||||||| || || || || || ||||| || ||||| | |||||| | || Sbjct 959 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1018 Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141 ||| ||| ||||||||| || | | || ||||| || ||||||||||| || | || Sbjct 1019 AAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1078 Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || ||||| | |||||||| | ||||| |||||| Sbjct 1079 AAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1114 >seq31551 Length=1713 Score = 210 bits (232), Expect = 7e-50 Identities = 252/341 (74%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||| Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG----CTAGA 5301 |||||||| |||||||| | || ||| ||||| || || | ||| || || Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838 Query 5302 GT--CAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATT 5359 | |||| || || || ||||| || || ||||| | | ||||||||| ||| || Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898 Query 5360 CCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTA 5419 || | || || | ||| || | || || ||||||| ||| |||||||||||||| | Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958 Query 5420 CGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 5479 || |||||| | |||||||| |||||||| | || ||||| || |||||||| || Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018 Query 5480 ACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520 || || ||||| |||||||| ||||| |||||| | || || Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACC 1059 >seq31730 Length=297 Score = 199 bits (220), Expect = 1e-46 Identities = 207/269 (77%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638 |||||||||||| ||| | | || |||||||| ||||| || || | |||||| || Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210 Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698 || ||||||||||| ||||| || ||||||||||| | ||| ||||| ||||||||||| Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150 Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758 || || ||||||||||||||| |||||||| || || | ||||| | || || || Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90 Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817 | ||||| | || ||||| || ||||||||||| || |||||| || ||||| || | Sbjct 89 GCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAG 31 Query 5818 TCTGTAACTAAGTTCCCATTGGCGTCCCA 5846 | | ||||||||||||| | || |||| Sbjct 30 ACGGAAACTAAGTTCCCACTCACGACCCA 2 >seq34854 Length=328 Score = 167 bits (184), Expect = 7e-37 Identities = 209/287 (73%), Gaps = 0/287 (0%) Strand=Plus/Minus Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950 || || || || ||||| | ||||||||| | | || |||||||| || || || || Sbjct 318 TAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATATTGGGTAAAAA 259 Query 5951 TGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAG 6010 || || || || || || | || | || ||| || || || || ||||||||||| Sbjct 258 TGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATTGTTTCCATAA 199 Query 6011 AGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACG 6070 ||||||||||| | || |||||||| || || || || || ||||| || ||||| | | Sbjct 198 AGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATG 139 Query 6071 AATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAAC 6130 || || | |||||| ||| ||||||||| || | | || ||||| || ||||||||| Sbjct 138 AAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAAC 79 Query 6131 CACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177 || || | || || ||||| | |||||| || | ||||| |||||| Sbjct 78 CATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32 >seq31523 Length=225 Score = 147 bits (162), Expect = 7e-31 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 5320 GAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 5379 ||| || || || || || || |||||||||||| ||| || | || || | ||| || Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166 Query 5380 GCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGC 5439 | || || ||||||| ||| |||||||| |||||| ||| |||||| || ||||| Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106 Query 5440 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTC 5499 ||| |||||||| | || ||||| || |||||||| || || || ||||| |||||||| Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46 Query 5500 CTCTTGGCCGAATTTATATCC 5520 |||||| |||||| | || || Sbjct 45 CTCTTGACCGAATCTGTAACC 25 >seq203 Length=8626763 Score = 127 bits (140), Expect = 6e-25 Identities = 151/202 (75%), Gaps = 2/202 (1%) Strand=Plus/Plus Query 5633 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTA 5692 || || |||| ||||||||| ||||| || || |||||||| | ||| || || |||| | Sbjct 3756301 TGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGCA 3756360 Query 5693 CCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAA 5752 | || || || ||||||||| ||||| || ||||| || || | ||||| | || Sbjct 3756361 CTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAAG 3756420 Query 5753 AATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCAT 5811 || || | ||||| | | |||||||| ||||||||||| || |||||| || ||||| Sbjct 3756421 AAAACAGCAGTAG-CAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479 Query 5812 TCCTAATCTGTAACTAAGTTCC 5833 |||| | | ||||||||||| Sbjct 3756480 ACCTAGACGGAAACTAAGTTCC 3756501 >seq77 Length=8408033 Score = 116 bits (128), Expect = 1e-21 Identities = 259/383 (68%), Gaps = 7/383 (2%) Strand=Plus/Minus Query 5705 AGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTA 5763 |||||||||| |||| |||||| || || | ||||| | || || || | || Sbjct 2699062 AGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAACAATAATA 2699003 Query 5764 GGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTA 5823 | | ||||| || ||||||||||| || |||||| | | ||| |||| | | Sbjct 2699002 G-CAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAA 2698944 Query 5824 ACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGAC 5883 |||||||||||| | || |||| |||| || | ||||| | |||||| | || | Sbjct 2698943 ACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAAT 2698884 Query 5884 GAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATG 5941 || | || || || || ||||| | ||||||||| | ||| | ||||||| | || Sbjct 2698883 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGAT--GATGCTTCCTACATT 2698826 Query 5942 GGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTG 6001 || || | || || || || || || | || | || ||| || || || || ||| Sbjct 2698825 GGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTG 2698766 Query 6002 TTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGT 6061 |||||||| |||||||||| | | |||| || || || || || || | ||| || Sbjct 2698765 TTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGAGGA 2698706 Query 6062 GCAGCTACGAATGC-TAATATAA 6083 ||||| | ||| | |||||||| Sbjct 2698705 GCAGCCATGAACACTTAATATAA 2698683 >seq85 Length=5226098 Score = 95.1 bits (104), Expect = 4e-15 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254 ||||| || || |||||||| |||||||| | ||| ||||| ||||||||||||||||| Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246 Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314 |||| || | | ||| |||| || || | | ||| | ||||| || || Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306 Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCC 5361 || ||||| || || || || || || |||||||||||| ||| || Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353 >seq31544 Length=164 Score = 91.5 bits (100), Expect = 4e-14 Identities = 77/95 (81%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245 ||| |||| ||||| || || |||||||| |||||||| ||||| ||||| ||||||||| Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73 Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGT 5280 ||||| || ||||| || | | ||| ||||| || Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGT 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152583660715536