Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_016658.1
Length=47741
Score E
Sequences producing significant alignments: (Bits) Value
seq444 558 1e-154
seq31551 210 7e-50
seq31730 199 1e-46
seq34854 167 7e-37
seq31523 147 7e-31
seq203 127 6e-25
seq77 116 1e-21
seq85 95.1 4e-15
seq31544 91.5 4e-14
>seq444
Length=4271
Score = 558 bits (618), Expect = 1e-154
Identities = 724/996 (73%), Gaps = 6/996 (1%)
Strand=Plus/Plus
Query 5185 CTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCAT 5244
|||| |||| ||||| || || ||||||||||||||||| ||||| ||||| ||||||||
Sbjct 122 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 181
Query 5245 ACCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTC 5304
||||||||| |||||||| | | ||| |||||||| || | | || | ||
Sbjct 182 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 241
Query 5305 AACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCAT 5364
||| ||||| || ||||| || || || || || || ||||||||||| || || |
Sbjct 242 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 301
Query 5365 AGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCT 5424
|| |||| ||| || | || || ||||||| || | ||||||||||||| |||
Sbjct 302 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 361
Query 5425 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 5484
|||||| || |||||||| ||||| || | || ||||| || || ||||| || |||||
Sbjct 362 ATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 421
Query 5485 GTTATACGTTTCTTCCTCTTGGCCGAATTTATATCCATAGTTCTGAGAAGTAAGCCCAGT 5544
||| || |||||||| ||||| |||||| | || || | || ||| | | ||
Sbjct 422 GTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 481
Query 5545 TGTTTCACGAATGAGCGAAGAAGTAACAAGACTTCCATGCATAGCAGCGAACAAAGCTCC 5604
||||| | || | |||||| || | |||||||||||| || | | ||
Sbjct 482 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCC 541
Query 5605 ACCGAATACCCCAGCAACACCGAGCATGTGGAACGGATGCATAAGGATATTGTGTTCTGC 5664
|||||||| ||||| ||||| | |||||| || || |||||||| || ||||| || ||
Sbjct 542 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 601
Query 5665 CTGGAATACGAACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATACCATCACTGAA 5724
||||||||| | ||||||||| |||||||||||||| || ||||||||||||||| ||
Sbjct 602 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 661
Query 5725 ACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTAGGCTGCGGCAACCGGTGCTG 5783
||||||||| || | || || | || || || | ||| || || ||||| || ||||
Sbjct 662 ACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGT-CGCAGCTGCAACAGGAGCTG 720
Query 5784 AATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTAACTAAGTTCCCATTGGCGTC 5843
||||||| || |||||| || ||||| || | | | ||||||||||||| | || |
Sbjct 721 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 780
Query 5844 CCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGACGAGTTGGTATGGTCCTCCAT 5903
||| ||| || | ||||| | ||||| | || | |||| || || || || |
Sbjct 781 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 840
Query 5904 TGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATGGGATAGAAGTGTAACCCAAT 5961
|||| ||||||||||| | ||| || ||||||||||| || || || || || |||||
Sbjct 841 TGTATAGCCATTCATCAACGGAT--GCAGCTTCCCAGATTGGGTAAAAATGCAATCCAAT 898
Query 5962 TGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAGAGTAGAGATCC 6021
|| || | || | || ||| || || || || |||||||| || || ||||||||
Sbjct 899 AGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCC 958
Query 6022 TGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACGAATGCTAATAT 6081
| || |||||||| || || || || || ||||| || ||||| | |||||| | ||
Sbjct 959 AGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAAT 1018
Query 6082 AAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAACCACCCCACATA 6141
||| ||| ||||||||| || | | || ||||| || ||||||||||| || | ||
Sbjct 1019 AAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTA 1078
Query 6142 GAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|| ||||| | |||||||| | ||||| ||||||
Sbjct 1079 AAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1114
>seq31551
Length=1713
Score = 210 bits (232), Expect = 7e-50
Identities = 252/341 (74%), Gaps = 6/341 (2%)
Strand=Plus/Plus
Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245
||| |||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||
Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778
Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCG----CTAGA 5301
|||||||| |||||||| | || ||| ||||| || || | ||| || ||
Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838
Query 5302 GT--CAACGACTGACTGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATT 5359
| |||| || || || ||||| || || ||||| | | ||||||||| ||| ||
Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898
Query 5360 CCCATAGAGGTAAGCCATATGCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTA 5419
|| | || || | ||| || | || || ||||||| ||| |||||||||||||| |
Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958
Query 5420 CGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 5479
|| |||||| | |||||||| |||||||| | || ||||| || |||||||| ||
Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018
Query 5480 ACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTATATCC 5520
|| || ||||| |||||||| ||||| |||||| | || ||
Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACC 1059
>seq31730
Length=297
Score = 199 bits (220), Expect = 1e-46
Identities = 207/269 (77%), Gaps = 2/269 (1%)
Strand=Plus/Minus
Query 5579 CCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGTGGAAC 5638
|||||||||||| ||| | | || |||||||| ||||| || || | |||||| ||
Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210
Query 5639 GGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTACCAGAG 5698
|| ||||||||||| ||||| || ||||||||||| | ||| ||||| |||||||||||
Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150
Query 5699 ATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACT 5758
|| || ||||||||||||||| |||||||| || || | ||||| | || || ||
Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90
Query 5759 G-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAA 5817
| ||||| | || ||||| || ||||||||||| || |||||| || ||||| || |
Sbjct 89 GCAGTAG-CAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAG 31
Query 5818 TCTGTAACTAAGTTCCCATTGGCGTCCCA 5846
| | ||||||||||||| | || ||||
Sbjct 30 ACGGAAACTAAGTTCCCACTCACGACCCA 2
>seq34854
Length=328
Score = 167 bits (184), Expect = 7e-37
Identities = 209/287 (73%), Gaps = 0/287 (0%)
Strand=Plus/Minus
Query 5891 TATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCTTCCCAGATGGGATAGAAG 5950
|| || || || ||||| | ||||||||| | | || |||||||| || || || ||
Sbjct 318 TAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATATTGGGTAAAAA 259
Query 5951 TGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTGTTTCCATAG 6010
|| || || || || || | || | || ||| || || || || |||||||||||
Sbjct 258 TGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATTGTTTCCATAA 199
Query 6011 AGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGTGCAGCTACG 6070
||||||||||| | || |||||||| || || || || || ||||| || ||||| | |
Sbjct 198 AGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATG 139
Query 6071 AATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGTATCATTAAGACACCAAAC 6130
|| || | |||||| ||| ||||||||| || | | || ||||| || |||||||||
Sbjct 138 AAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAAC 79
Query 6131 CACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCACAGAA 6177
|| || | || || ||||| | |||||| || | ||||| ||||||
Sbjct 78 CATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32
>seq31523
Length=225
Score = 147 bits (162), Expect = 7e-31
Identities = 153/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 5320 GAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 5379
||| || || || || || || |||||||||||| ||| || | || || | ||| ||
Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166
Query 5380 GCAAACGACGGGCCAAGTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGC 5439
| || || ||||||| ||| |||||||| |||||| ||| |||||| || |||||
Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106
Query 5440 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTC 5499
||| |||||||| | || ||||| || |||||||| || || || ||||| ||||||||
Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46
Query 5500 CTCTTGGCCGAATTTATATCC 5520
|||||| |||||| | || ||
Sbjct 45 CTCTTGACCGAATCTGTAACC 25
>seq203
Length=8626763
Score = 127 bits (140), Expect = 6e-25
Identities = 151/202 (75%), Gaps = 2/202 (1%)
Strand=Plus/Plus
Query 5633 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTA 5692
|| || |||| ||||||||| ||||| || || |||||||| | ||| || || |||| |
Sbjct 3756301 TGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGCA 3756360
Query 5693 CCAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAA 5752
| || || || ||||||||| ||||| || ||||| || || | ||||| | ||
Sbjct 3756361 CTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAAG 3756420
Query 5753 AATACTG-AGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCAT 5811
|| || | ||||| | | |||||||| ||||||||||| || |||||| || |||||
Sbjct 3756421 AAAACAGCAGTAG-CAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479
Query 5812 TCCTAATCTGTAACTAAGTTCC 5833
|||| | | |||||||||||
Sbjct 3756480 ACCTAGACGGAAACTAAGTTCC 3756501
>seq77
Length=8408033
Score = 116 bits (128), Expect = 1e-21
Identities = 259/383 (68%), Gaps = 7/383 (2%)
Strand=Plus/Minus
Query 5705 AGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAAATACTG-AGTA 5763
|||||||||| |||| |||||| || || | ||||| | || || || | ||
Sbjct 2699062 AGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAACAATAATA 2699003
Query 5764 GGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTCCTAATCTGTA 5823
| | ||||| || ||||||||||| || |||||| | | ||| |||| | |
Sbjct 2699002 G-CAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAA 2698944
Query 5824 ACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCGATACCAATAAGGAAGTGGAAGACGAC 5883
|||||||||||| | || |||| |||| || | ||||| | |||||| | || |
Sbjct 2698943 ACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAAT 2698884
Query 5884 GAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGA--GATTGGCTGCTTCCCAGATG 5941
|| | || || || || ||||| | ||||||||| | ||| | ||||||| | ||
Sbjct 2698883 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGAT--GATGCTTCCTACATT 2698826
Query 5942 GGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGATATGATGTTG 6001
|| || | || || || || || || | || | || ||| || || || || |||
Sbjct 2698825 GGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTG 2698766
Query 6002 TTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCGACTGGGGGT 6061
|||||||| |||||||||| | | |||| || || || || || || | ||| ||
Sbjct 2698765 TTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGAGGA 2698706
Query 6062 GCAGCTACGAATGC-TAATATAA 6083
||||| | ||| | ||||||||
Sbjct 2698705 GCAGCCATGAACACTTAATATAA 2698683
>seq85
Length=5226098
Score = 95.1 bits (104), Expect = 4e-15
Identities = 121/167 (72%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 5195 GCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATACCAAGGTTG 5254
||||| || || |||||||| |||||||| | ||| ||||| |||||||||||||||||
Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246
Query 5255 GCACGGTTCAGGACATCTGCCCAAGTGGGAACGATTCTACCGCTAGAGTCAACGACTGAC 5314
|||| || | | ||| |||| || || | | ||| | ||||| || ||
Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306
Query 5315 TGATTGAAGTTAAAGCCGTTAAGATTAAAAGCCATAGTGGAGATTCC 5361
|| ||||| || || || || || || |||||||||||| ||| ||
Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353
>seq31544
Length=164
Score = 91.5 bits (100), Expect = 4e-14
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 5186 TCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGAGCATTTCGTTCGTGCATTACTTCCATA 5245
||| |||| ||||| || || |||||||| |||||||| ||||| ||||| |||||||||
Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73
Query 5246 CCAAGGTTGGCACGGTTCAGGACATCTGCCCAAGT 5280
||||| || ||||| || | | ||| ||||| ||
Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGT 38
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 152583660715536
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