Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_016659.1
Length=47536
Score E
Sequences producing significant alignments: (Bits) Value
seq444 535 1e-147
seq31730 208 2e-49
seq31551 188 2e-43
seq77 163 9e-36
seq34854 161 3e-35
seq203 149 2e-31
seq31523 131 5e-26
seq85 93.3 1e-14
seq31544 86.0 2e-12
>seq444
Length=4271
Score = 535 bits (592), Expect = 1e-147
Identities = 718/999 (72%), Gaps = 0/999 (0%)
Strand=Plus/Plus
Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496
|| || |||| ||| |||| ||| |||||||||||||| || ||||| |||||||||||
Sbjct 116 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 175
Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556
|||||| || | || |||||||||| ||| ||||||||||| | || | ||| |
Sbjct 176 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 235
Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616
|||||| ||||| || ||||| || || || || || || ||||||||||| |
Sbjct 236 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 295
Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676
|| | ||| |||| ||| || | || |||||||| || | |||||||||||||
Sbjct 296 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 355
Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736
||| ||| || || |||||||| ||||| || | || ||||| || || ||||| ||
Sbjct 356 ACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 415
Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796
|||||||| || || ||||||||||| |||||| | || || | || |||||||
Sbjct 416 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 475
Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856
| || ||||| | || | ||||| || | || ||||||||| || |
Sbjct 476 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 535
Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916
| || |||||||| || || ||||| | ||| || || || |||||||| || |||||
Sbjct 536 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 595
Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976
|| ||||| || |||| |||||| |||||||| || || || || ||||||||||||||
Sbjct 596 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 655
Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036
||| ||||| || || |||| || |||| ||||| |||||| || |||||||||||
Sbjct 656 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 715
Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096
|||||||| || ||| ||||| || | ||| || || | ||||||||||||| |
Sbjct 716 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 775
Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156
|| |||| ||| | | || | | |||||| | ||||| |||| ||| || ||
Sbjct 776 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 835
Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216
||||| || | ||| || || | || ||||||||||||||||||||| || || | ||
Sbjct 836 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCC 895
Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276
|| || ||| | || | || || || || || || |||||||| || || | |
Sbjct 896 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 955
Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336
||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| ||
Sbjct 956 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1015
Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396
| ||| | | ||| || || | | ||||||||| | || |||||||| || |
Sbjct 1016 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1075
Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435
|| || ||||| | || || || | ||||| ||| ||
Sbjct 1076 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1114
>seq31730
Length=297
Score = 208 bits (230), Expect = 2e-49
Identities = 207/268 (77%), Gaps = 0/268 (0%)
Strand=Plus/Minus
Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896
|| ||||||||| ||||| | || |||||||| || || || || | ||| || ||
Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210
Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956
|| ||||||||||| ||||| || ||||| || |||| ||| || |||||||| || |||
Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150
Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016
|| || ||||||||||||||||| ||||| ||||| |||| ||||||| ||||| |||
Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90
Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGT 26076
||| || ||||||||||| |||||||| || ||| ||||| || | ||| || ||
Sbjct 89 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 30
Query 26077 CTATAACTAAGTTCCCATTGTCGTCCCA 26104
| ||||||||||||| | || ||||
Sbjct 29 CGGAAACTAAGTTCCCACTCACGACCCA 2
>seq31551
Length=1713
Score = 188 bits (208), Expect = 2e-43
Identities = 247/341 (72%), Gaps = 6/341 (2%)
Strand=Plus/Plus
Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503
||| ||| |||| ||| || |||||||| || || ||||| |||||||||||||||||
Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778
Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT-----TGGGACGACTCTTCCGTTGG 25558
|| | || |||||||||| | |||||||| || | | ||| || | |||
Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838
Query 25559 A-ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACT 25617
|||||| || || || ||||| || || ||||| | | ||||||||| ||| |
Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898
Query 25618 CCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTA 25677
|| | ||| || | ||| || | || ||||||||||| |||||||||||||| |
Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958
Query 25678 CGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 25737
|| ||| || | |||||||| |||||||| | || ||||| || |||||||| ||
Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018
Query 25738 ACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCC 25778
|| || ||||| || ||||||||||| |||||| | || ||
Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACC 1059
>seq77
Length=8408033
Score = 163 bits (180), Expect = 9e-36
Identities = 258/370 (70%), Gaps = 0/370 (0%)
Strand=Plus/Minus
Query 25955 AAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATA 26014
|||| | |||||||||| |||| | ||||| || |||| ||||||| ||||| |
Sbjct 2699070 AAATTTCTAGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAA 2699011
Query 26015 CAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTA 26074
|| || || ||||||||| |||||||| || ||| ||||| | | ||| ||||
Sbjct 2699010 CAATAATAGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTA 2698951
Query 26075 GTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGA 26134
| | | ||||||||||||| | || |||| |||| | | || | | ||||| |
Sbjct 2698950 GACGAAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTA 2698891
Query 26135 ACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCC 26194
||||| || | ||| || || ||||| || ||||| || || | | || ||||||
Sbjct 2698890 GTACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCT 2698831
Query 26195 AGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGA 26254
| |||||||| | || | ||| || || ||| | || | || || || ||||| |
Sbjct 2698830 ACATTGGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAA 2698771
Query 26255 TGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGG 26314
| ||||||||||| |||| | || || | ||| | ||||||||||| ||||| | |
Sbjct 2698770 TATTGTTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTG 2698711
Query 26315 GAGGCGCAGC 26324
|||| |||||
Sbjct 2698710 GAGGAGCAGC 2698701
>seq34854
Length=328
Score = 161 bits (178), Expect = 3e-35
Identities = 214/297 (72%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 26139 AATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 26198
||| || | ||| || || ||||| || ||||| || || | | ||| |||||||| ||
Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATAT 269
Query 26199 TGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTT 26258
|||||| || || | ||| || || ||| | || | || || || ||||| || ||
Sbjct 268 TGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATT 209
Query 26259 GTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 26318
||||||||| |||| | ||| || ||||| |||||||||||||| ||||| || |||||
Sbjct 208 GTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGG 149
Query 26319 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 26378
||||||| || ||||| | |||| | | ||| || || | | ||||||||| |
Sbjct 148 AGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 89
Query 26379 TACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435
|| |||||||| || | || || ||||| | || || || | ||||| ||| ||
Sbjct 88 AACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32
>seq203
Length=8626763
Score = 149 bits (164), Expect = 2e-31
Identities = 154/202 (76%), Gaps = 0/202 (0%)
Strand=Plus/Plus
Query 25890 ATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGT 25949
||| || |||| ||||||||| ||||| || || || || |||| ||| ||||||||||
Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359
Query 25950 CCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAA 26009
| ||||| || ||||||||| ||||| | || || ||||| |||| ||||||| ||
Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419
Query 26010 GAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCAT 26069
||| |||||| || | |||||| || |||||||| || ||| ||||| || | |||
Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479
Query 26070 GCCTAGTCTATAACTAAGTTCC 26091
||||| | |||||||||||
Sbjct 3756480 ACCTAGACGGAAACTAAGTTCC 3756501
>seq31523
Length=225
Score = 131 bits (144), Expect = 5e-26
Identities = 159/217 (73%), Gaps = 0/217 (0%)
Strand=Plus/Minus
Query 25578 GAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 25637
||| || || || || || || |||||||||||| || || | ||| || | ||| ||
Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166
Query 25638 GCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGC 25697
| || ||||||||||| |||||||| |||||| ||| ||| || || |||||
Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106
Query 25698 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 25757
||| |||||||| | || ||||| || |||||||| || || || ||||| || |||||
Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46
Query 25758 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 25794
||||| |||||| | || || | || |||||||
Sbjct 45 CTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCA 9
>seq85
Length=5226098
Score = 93.3 bits (102), Expect = 1e-14
Identities = 116/159 (73%), Gaps = 0/159 (0%)
Strand=Plus/Plus
Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512
|||| ||| ||||||||||| || || |||| ||||||||||||||||| || | ||
Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246
Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572
|||| |||| ||| ||| |||| || | || | || | |||||| || ||
Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306
Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 25611
|| ||||| || || || || || || ||||||||||||
Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 1123345
>seq31544
Length=164
Score = 86.0 bits (94), Expect = 2e-12
Identities = 76/95 (80%), Gaps = 0/95 (0%)
Strand=Plus/Minus
Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503
||| ||| |||| ||| ||||||||||| || || ||||| |||||||||||||||||
Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73
Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 25538
|| | | ||||| |||| ||| |||||||| ||
Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGT 38
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151927944084576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |