Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq444 535 1e-147 seq31730 208 2e-49 seq31551 188 2e-43 seq77 163 9e-36 seq34854 161 3e-35 seq203 149 2e-31 seq31523 131 5e-26 seq85 93.3 1e-14 seq31544 86.0 2e-12 >seq444 Length=4271 Score = 535 bits (592), Expect = 1e-147 Identities = 718/999 (72%), Gaps = 0/999 (0%) Strand=Plus/Plus Query 25437 TGTAGACTCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAAC 25496 || || |||| ||| |||| ||| |||||||||||||| || ||||| ||||||||||| Sbjct 116 TGGAGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAAC 175 Query 25497 TTCCATGCCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTT 25556 |||||| || | || |||||||||| ||| ||||||||||| | || | ||| | Sbjct 176 TTCCATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTG 235 Query 25557 GGAATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGAC 25616 |||||| ||||| || ||||| || || || || || || ||||||||||| | Sbjct 236 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 295 Query 25617 TCCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACT 25676 || | ||| |||| ||| || | || |||||||| || | ||||||||||||| Sbjct 296 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 355 Query 25677 ACGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGC 25736 ||| ||| || || |||||||| ||||| || | || ||||| || || ||||| || Sbjct 356 ACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 415 Query 25737 AACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAG 25796 |||||||| || || ||||||||||| |||||| | || || | || ||||||| Sbjct 416 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 475 Query 25797 CCCAGTTGTTTCACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAA 25856 | || ||||| | || | ||||| || | || ||||||||| || | Sbjct 476 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 535 Query 25857 AGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTG 25916 | || |||||||| || || ||||| | ||| || || || |||||||| || ||||| Sbjct 536 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 595 Query 25917 TTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATC 25976 || ||||| || |||| |||||| |||||||| || || || || |||||||||||||| Sbjct 596 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 655 Query 25977 AGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGG 26036 ||| ||||| || || |||| || |||| ||||| |||||| || ||||||||||| Sbjct 656 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 715 Query 26037 GGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTG 26096 |||||||| || ||| ||||| || | ||| || || | ||||||||||||| | Sbjct 716 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 775 Query 26097 TCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCC 26156 || |||| ||| | | || | | |||||| | ||||| |||| ||| || || Sbjct 776 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 835 Query 26157 ACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACC 26216 ||||| || | ||| || || | || ||||||||||||||||||||| || || | || Sbjct 836 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCC 895 Query 26217 GATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGC 26276 || || ||| | || | || || || || || || |||||||| || || | | Sbjct 896 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 955 Query 26277 TCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAAT 26336 ||| || ||||| |||||||||||||| ||||| || ||||| ||||||| ||||| || Sbjct 956 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1015 Query 26337 TAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCAC 26396 | ||| | | ||| || || | | ||||||||| | || |||||||| || | Sbjct 1016 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1075 Query 26397 ATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || || ||||| | || || || | ||||| ||| || Sbjct 1076 GTAAAGACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1114 >seq31730 Length=297 Score = 208 bits (230), Expect = 2e-49 Identities = 207/268 (77%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 25837 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 25896 || ||||||||| ||||| | || |||||||| || || || || | ||| || || Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210 Query 25897 GGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTCCCTGAA 25956 || ||||||||||| ||||| || ||||| || |||| ||| || |||||||| || ||| Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150 Query 25957 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATACA 26016 || || ||||||||||||||||| ||||| ||||| |||| ||||||| ||||| ||| Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90 Query 26017 GCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTAGT 26076 ||| || ||||||||||| |||||||| || ||| ||||| || | ||| || || Sbjct 89 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 30 Query 26077 CTATAACTAAGTTCCCATTGTCGTCCCA 26104 | ||||||||||||| | || |||| Sbjct 29 CGGAAACTAAGTTCCCACTCACGACCCA 2 >seq31551 Length=1713 Score = 188 bits (208), Expect = 2e-43 Identities = 247/341 (72%), Gaps = 6/341 (2%) Strand=Plus/Plus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| || |||||||| || || ||||| ||||||||||||||||| Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT-----TGGGACGACTCTTCCGTTGG 25558 || | || |||||||||| | |||||||| || | | ||| || | ||| Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838 Query 25559 A-ATCAACGACTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACT 25617 |||||| || || || ||||| || || ||||| | | ||||||||| ||| | Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898 Query 25618 CCCATAGCGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTA 25677 || | ||| || | ||| || | || ||||||||||| |||||||||||||| | Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958 Query 25678 CGGCTATTATTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCA 25737 || ||| || | |||||||| |||||||| | || ||||| || |||||||| || Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018 Query 25738 ACAATGTTATACGTCTCTTCTTCTTGGCCGAATTTATATCC 25778 || || ||||| || ||||||||||| |||||| | || || Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACC 1059 >seq77 Length=8408033 Score = 163 bits (180), Expect = 9e-36 Identities = 258/370 (70%), Gaps = 0/370 (0%) Strand=Plus/Minus Query 25955 AAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAGAATA 26014 |||| | |||||||||| |||| | ||||| || |||| ||||||| ||||| | Sbjct 2699070 AAATTTCTAGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAA 2699011 Query 26015 CAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATGCCTA 26074 || || || ||||||||| |||||||| || ||| ||||| | | ||| |||| Sbjct 2699010 CAATAATAGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTA 2698951 Query 26075 GTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATGCCGATGAGAAAGTGGA 26134 | | | ||||||||||||| | || |||| |||| | | || | | ||||| | Sbjct 2698950 GACGAAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTA 2698891 Query 26135 ACACAATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCC 26194 ||||| || | ||| || || ||||| || ||||| || || | | || |||||| Sbjct 2698890 GTACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCT 2698831 Query 26195 AGATTGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGA 26254 | |||||||| | || | ||| || || ||| | || | || || || ||||| | Sbjct 2698830 ACATTGGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAA 2698771 Query 26255 TGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGG 26314 | ||||||||||| |||| | || || | ||| | ||||||||||| ||||| | | Sbjct 2698770 TATTGTTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTG 2698711 Query 26315 GAGGCGCAGC 26324 |||| ||||| Sbjct 2698710 GAGGAGCAGC 2698701 >seq34854 Length=328 Score = 161 bits (178), Expect = 3e-35 Identities = 214/297 (72%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 26139 AATAAGTTGATATGGTCCACCGTTATACAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 26198 ||| || | ||| || || ||||| || ||||| || || | | ||| |||||||| || Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATAT 269 Query 26199 TGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGAGATGATGTT 26258 |||||| || || | ||| || || ||| | || | || || || ||||| || || Sbjct 268 TGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATT 209 Query 26259 GTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCCACGGGAGG 26318 ||||||||| |||| | ||| || ||||| |||||||||||||| ||||| || ||||| Sbjct 208 GTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGG 149 Query 26319 CGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGGATCATTAG 26378 ||||||| || ||||| | |||| | | ||| || || | | ||||||||| | Sbjct 148 AGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 89 Query 26379 TACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCACATAA 26435 || |||||||| || | || || ||||| | || || || | ||||| ||| || Sbjct 88 AACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32 >seq203 Length=8626763 Score = 149 bits (164), Expect = 2e-31 Identities = 154/202 (76%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 25890 ATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGT 25949 ||| || |||| ||||||||| ||||| || || || || |||| ||| |||||||||| Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359 Query 25950 CCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAA 26009 | ||||| || ||||||||| ||||| | || || ||||| |||| ||||||| || Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419 Query 26010 GAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCAT 26069 ||| |||||| || | |||||| || |||||||| || ||| ||||| || | ||| Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479 Query 26070 GCCTAGTCTATAACTAAGTTCC 26091 ||||| | ||||||||||| Sbjct 3756480 ACCTAGACGGAAACTAAGTTCC 3756501 >seq31523 Length=225 Score = 131 bits (144), Expect = 5e-26 Identities = 159/217 (73%), Gaps = 0/217 (0%) Strand=Plus/Minus Query 25578 GAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATAT 25637 ||| || || || || || || |||||||||||| || || | ||| || | ||| || Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166 Query 25638 GCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTATTAAAGCTAGC 25697 | || ||||||||||| |||||||| |||||| ||| ||| || || ||||| Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106 Query 25698 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTC 25757 ||| |||||||| | || ||||| || |||||||| || || || ||||| || ||||| Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46 Query 25758 TTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCA 25794 ||||| |||||| | || || | || ||||||| Sbjct 45 CTCTTGACCGAATCTGTAACCTTCATTAGCAGATTCA 9 >seq85 Length=5226098 Score = 93.3 bits (102), Expect = 1e-14 Identities = 116/159 (73%), Gaps = 0/159 (0%) Strand=Plus/Plus Query 25453 GCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCG 25512 |||| ||| ||||||||||| || || |||| ||||||||||||||||| || | || Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246 Query 25513 GCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGAC 25572 |||| |||| ||| ||| |||| || | || | || | |||||| || || Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306 Query 25573 TGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTG 25611 || ||||| || || || || || || |||||||||||| Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTG 1123345 >seq31544 Length=164 Score = 86.0 bits (94), Expect = 2e-12 Identities = 76/95 (80%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 25444 TCAGCAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATG 25503 ||| ||| |||| ||| ||||||||||| || || ||||| ||||||||||||||||| Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73 Query 25504 CCTAAGTCGGCACGGTTAAGAATGTCAGCCCAAGT 25538 || | | ||||| |||| ||| |||||||| || Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGT 38 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151927944084576