Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_018875.1
Length=119082
Score E
Sequences producing significant alignments: (Bits) Value
seq203 118 8e-22
seq652 98.7 8e-16
seq116 95.1 9e-15
seq49 93.3 3e-14
>seq203
Length=8626763
Score = 118 bits (130), Expect = 8e-22
Identities = 159/219 (73%), Gaps = 2/219 (1%)
Strand=Plus/Minus
Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608
|| || | ||||| || ||||| ||| || ||||| ||||| |||| || | |
Sbjct 5731059 AGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTC 5731000
Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667
| || |||| |||||||||||| || ||||||| |||||| |||| ||||| | |||||
Sbjct 5730999 CCATCCTCCAGCTGCTTACCGGCGAAGATCAGTCTCTGTTGGTCCGGTGGGATC-CCCTC 5730941
Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727
|||||| |||||| || ||| | | | | || || ||| ||||||| ||
Sbjct 5730940 CTTGTCTTGGATCTTTGCCTTAACATTATCAATCGTGTCCGAGCTCTCGACCTCCAAGGT 5730881
Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| ||||||||||||| || || ||||||||||||||
Sbjct 5730880 GATGGTTTTTCCCGTCAGGGTCTTGACAAAAATCTGCAT 5730842
>seq652
Length=2384379
Score = 98.7 bits (108), Expect = 8e-16
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617
||||| || || || |||||| || || || ||||| | || | | |||| |||
Sbjct 465722 ACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCGGCCAGTGTCCTTCCGTCTTCC 465663
Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677
| ||||| |||||||| ||||| | ||| || || | || | ||||||||||||
Sbjct 465662 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 465603
Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737
|||||| || ||| | | | ||||| ||||||||||| || || || |||
Sbjct 465602 ATCTTTGCCTTCACATTGTCGATGGTGTCTGAACTCTCCACCTCCAGAGTGATGGTCTTT 465543
Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
|| |||| ||| || ||||||||||||||
Sbjct 465542 CCGGTCAGAGTCTTGACAAAAATCTGCAT 465514
>seq116
Length=10441785
Score = 95.1 bits (104), Expect = 9e-15
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Plus
Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596
|||||||| | || || | || | || || || ||| || || |||||||||||
Sbjct 4711613 TCGCCGCCGCGGAGGCGGAGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAATCG 4711672
Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656
| || | ||| |||| |||| |||||| ||||| || || || ||||| |||||||
Sbjct 4711673 GCGAGGGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGC 4711732
Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716
|| | ||||||||||| ||||| || ||| | | | || || ||||
Sbjct 4711733 GGGATCCCCTCCTTGTCCTGTATCTTCGCCTTCACATTGTCGATCGTGTCCGAGCTCTCC 4711792
Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766
||||||| ||| ||||| || || |||| || || || || ||||||||
Sbjct 4711793 ACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAGATCTGCAT 4711842
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
||| || || |||||||| || | || | || |||| || | |||||| ||||| ||
Sbjct 4726936 CTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 4726877
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
|| || ||||| ||||||| || | ||||||||||| |||||| || |||
Sbjct 4726876 GATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATT 4726817
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | || || ||||||||||| ||| ||||| || || |||| || || ||
Sbjct 4726816 GTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCTGTCAGGGTCTTCAC 4726757
Query 48755 AAAAATCTGCAT 48766
|| ||||||||
Sbjct 4726756 GAAGATCTGCAT 4726745
Score = 82.4 bits (90), Expect = 6e-11
Identities = 140/203 (69%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623
|| |||||| ||| || || || |||||||| | || | | |||| || | ||||
Sbjct 4711868 TGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCTGCCGTCCTCGAGCTGC 4711927
Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683
|| ||||| || ||||| ||||| ||||||| || | |||||||||||| |||||
Sbjct 4711928 TTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 4711987
Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743
|| || | | | | || || ||| ||||| | ||| || ||||| || |||
Sbjct 4711988 GCCTTGACGTTATCGATCGTGTCCGAGCTCTCGACCTCGAGCGTGATGGTTTTGCCGGTC 4712047
Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766
| || || || || ||||||||
Sbjct 4712048 AGGGTCTTGACGAAGATCTGCAT 4712070
>seq49
Length=4798478
Score = 93.3 bits (102), Expect = 3e-14
Identities = 143/204 (70%), Gaps = 0/204 (0%)
Strand=Plus/Minus
Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622
||| ||||| ||| ||||||||||||||||| | || | || | || || | |||
Sbjct 2841289 ATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCCAGTGTCCGGCCATCCTCGAGCTG 2841230
Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682
|| || ||||| |||| ||||| || || | ||||| ||| |||||||| |||||
Sbjct 2841229 TTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGTATCTT 2841170
Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742
||| ||| | | | | || || ||| || |||| || || || || || ||
Sbjct 2841169 CGCTTTGACATTATCAATCGTGTCCGAGCTCTCGACTTCCAAAGTGATAGTCTTGCCAGT 2841110
Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766
|| ||| || ||||||||||||||
Sbjct 2841109 CAGAGTCTTCACAAAAATCTGCAT 2841086
Score = 82.4 bits (90), Expect = 6e-11
Identities = 134/193 (69%), Gaps = 0/193 (0%)
Strand=Plus/Minus
Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634
|||||| ||||| ||||| |||| | | | | |||| || | ||||| ||||||||
Sbjct 2870561 CTCTTTCTGAATGTTGTAGTCAGCCAAAGTCCTCCCGTCCTCGAGTTGCTTCCCGGCAAA 2870502
Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694
||||| | ||| || |||| || | ||||||||| || ||||| || ||
Sbjct 2870501 GATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTT 2870442
Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754
| | | ||||| ||||||||||| || || || ||||| |||| || || ||
Sbjct 2870441 GTCGATGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTCTTGAC 2870382
Query 48755 AAAAATCTGCATC 48767
||| |||||||||
Sbjct 2870381 AAAGATCTGCATC 2870369
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 380768717981448
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |