Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq203 118 8e-22 seq652 98.7 8e-16 seq116 95.1 9e-15 seq49 93.3 3e-14 >seq203 Length=8626763 Score = 118 bits (130), Expect = 8e-22 Identities = 159/219 (73%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| || ||||| ||| || ||||| ||||| |||| || | | Sbjct 5731059 AGGCGGAGCACCAGGTGGAGCGTAGACTCCTTCTGAATGTTGTAGTCAGCAAGGGTCCTC 5731000 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCG-TGGGAACGCCCTC 48667 | || |||| |||||||||||| || ||||||| |||||| |||| ||||| | ||||| Sbjct 5730999 CCATCCTCCAGCTGCTTACCGGCGAAGATCAGTCTCTGTTGGTCCGGTGGGATC-CCCTC 5730941 Query 48668 CTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGT 48727 |||||| |||||| || ||| | | | | || || ||| ||||||| || Sbjct 5730940 CTTGTCTTGGATCTTTGCCTTAACATTATCAATCGTGTCCGAGCTCTCGACCTCCAAGGT 5730881 Query 48728 AATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || ||||||||||||| || || |||||||||||||| Sbjct 5730880 GATGGTTTTTCCCGTCAGGGTCTTGACAAAAATCTGCAT 5730842 >seq652 Length=2384379 Score = 98.7 bits (108), Expect = 8e-16 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || || |||||| || || || ||||| | || | | |||| ||| Sbjct 465722 ACCAAGTGCAGAGTTGACTCTTTCTGGATGTTATAATCGGCCAGTGTCCTTCCGTCTTCC 465663 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | ||||| |||||||| ||||| | ||| || || | || | |||||||||||| Sbjct 465662 AGTTGCTTCCCGGCAAAAATCAGCCTCTGCTGGTCTGGAGGGATGCCCTCCTTGTCCTGG 465603 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 |||||| || ||| | | | ||||| ||||||||||| || || || ||| Sbjct 465602 ATCTTTGCCTTCACATTGTCGATGGTGTCTGAACTCTCCACCTCCAGAGTGATGGTCTTT 465543 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| ||| || |||||||||||||| Sbjct 465542 CCGGTCAGAGTCTTGACAAAAATCTGCAT 465514 >seq116 Length=10441785 Score = 95.1 bits (104), Expect = 9e-15 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 48537 TCGCCGCCCCTTAGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCA 48596 |||||||| | || || | || | || || || ||| || || ||||||||||| Sbjct 4711613 TCGCCGCCGCGGAGGCGGAGGACAAGGTGCAGGGTAGACTCCTTCTGGATATTGTAATCG 4711672 Query 48597 GATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTG 48656 | || | ||| |||| |||| |||||| ||||| || || || ||||| ||||||| Sbjct 4711673 GCGAGGGTGCGACCGTCCTCCAGCTGCTTCCCGGCGAAGATGAGCCGCTGCTGATCCGGC 4711732 Query 48657 GGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCC 48716 || | ||||||||||| ||||| || ||| | | | || || |||| Sbjct 4711733 GGGATCCCCTCCTTGTCCTGTATCTTCGCCTTCACATTGTCGATCGTGTCCGAGCTCTCC 4711792 Query 48717 ACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 ||||||| ||| ||||| || || |||| || || || || |||||||| Sbjct 4711793 ACCTCCAGCGTGATCGTCTTCCCGGTCAGGGTCTTCACGAAGATCTGCAT 4711842 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 ||| || || |||||||| || | || | || |||| || | |||||| ||||| || Sbjct 4726936 CTCCTTCTGGATATTGTAGTCGGCGAGGGTGCGGCCGTCCTCGAGCTGCTTCCCGGCGAA 4726877 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 || || ||||| ||||||| || | ||||||||||| |||||| || ||| Sbjct 4726876 GATGAGCCGCTGCTGATCCGGCGGGATCCCCTCCTTGTCCTGAATCTTCGCCTTCACATT 4726817 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | || || ||||||||||| ||| ||||| || || |||| || || || Sbjct 4726816 GTCGATCGTGTCCGAGCTCTCCACCTCCAGCGTGATCGTCTTCCCTGTCAGGGTCTTCAC 4726757 Query 48755 AAAAATCTGCAT 48766 || |||||||| Sbjct 4726756 GAAGATCTGCAT 4726745 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || |||||| ||| || || || |||||||| | || | | |||| || | |||| Sbjct 4711868 TGGAGCGTGGACTCCTTCTGGATGTTGTAATCGGCGAGGGTCCTGCCGTCCTCGAGCTGC 4711927 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| ||||||| || | |||||||||||| ||||| Sbjct 4711928 TTTCCGGCGAAGATCAGACGCTGCTGATCCGGCGGGATGCCCTCCTTGTCCTGGATCTTG 4711987 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 || || | | | | || || ||| ||||| | ||| || ||||| || ||| Sbjct 4711988 GCCTTGACGTTATCGATCGTGTCCGAGCTCTCGACCTCGAGCGTGATGGTTTTGCCGGTC 4712047 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || || || || |||||||| Sbjct 4712048 AGGGTCTTGACGAAGATCTGCAT 4712070 >seq49 Length=4798478 Score = 93.3 bits (102), Expect = 3e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 48563 ATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTG 48622 ||| ||||| ||| ||||||||||||||||| | || | || | || || | ||| Sbjct 2841289 ATGGAGCGTCGACTCCTTTTGAATATTGTAATCGGCCAGTGTCCGGCCATCCTCGAGCTG 2841230 Query 48623 CTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTT 48682 || || ||||| |||| ||||| || || | ||||| ||| |||||||| ||||| Sbjct 2841229 TTTCCCTGCAAAAATCAACCGCTGCTGGTCTGGGGGAATGCCTTCCTTGTCCTGTATCTT 2841170 Query 48683 TTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGT 48742 ||| ||| | | | | || || ||| || |||| || || || || || || Sbjct 2841169 CGCTTTGACATTATCAATCGTGTCCGAGCTCTCGACTTCCAAAGTGATAGTCTTGCCAGT 2841110 Query 48743 CAAAGTTTTTACAAAAATCTGCAT 48766 || ||| || |||||||||||||| Sbjct 2841109 CAGAGTCTTCACAAAAATCTGCAT 2841086 Score = 82.4 bits (90), Expect = 6e-11 Identities = 134/193 (69%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 48575 CTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGCTTACCGGCAAA 48634 |||||| ||||| ||||| |||| | | | | |||| || | ||||| |||||||| Sbjct 2870561 CTCTTTCTGAATGTTGTAGTCAGCCAAAGTCCTCCCGTCCTCGAGTTGCTTCCCGGCAAA 2870502 Query 48635 TATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTTTGTTTTACAGA 48694 ||||| | ||| || |||| || | ||||||||| || ||||| || || Sbjct 2870501 GATCAGCCTCTGCTGGTCCGGTGGGATGCCCTCCTTATCCTGGATCTTCGCCTTCACGTT 2870442 Query 48695 ACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTCAAAGTTTTTAC 48754 | | | ||||| ||||||||||| || || || ||||| |||| || || || Sbjct 2870441 GTCGATGGTGTCTGAACTCTCCACCTCCAAAGTGATGGTCTTTCCAGTCAGGGTCTTGAC 2870382 Query 48755 AAAAATCTGCATC 48767 ||| ||||||||| Sbjct 2870381 AAAGATCTGCATC 2870369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380768717981448