Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_019443.1 Length=172879 Score E Sequences producing significant alignments: (Bits) Value seq444 587 8e-163 seq31551 279 6e-70 seq31730 217 2e-51 seq31523 168 7e-37 seq34854 161 1e-34 seq134 127 2e-24 seq203 123 3e-23 seq85 123 3e-23 seq77 116 4e-21 seq151 100 3e-16 seq31544 96.9 4e-15 >seq444 Length=4271 Score = 587 bits (650), Expect = 8e-163 Identities = 706/957 (74%), Gaps = 12/957 (1%) Strand=Plus/Minus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || || Sbjct 1072 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATC 1013 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 ||||||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 1012 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 953 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 ||||| || || ||||| || || || ||||| | |||||| ||| |||||||| Sbjct 952 CTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGA 893 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || ||||||||||| ||| | ||||||| ||| | || || || || Sbjct 892 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 833 Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 162837 |||| |||| | || | ||||| | | || | ||| | | | |||||| Sbjct 832 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGT 776 Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897 ||||||||||| || ||| | ||||||||||||||||| ||||||||| || || Sbjct 775 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 716 Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957 || || | || || ||||| |||||| ||||||| | ||||| || ||| ||| Sbjct 715 CCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCT 656 Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017 || | |||||||| || || ||||||||||| |||| ||| | || ||||| || ||| Sbjct 655 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 596 Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCA 163077 |||||||| || |||||||| || || ||| | || || || ||||||||||| || || Sbjct 595 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 536 Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137 || |||||||||||||| ||||| | || |||||| | | ||||| ||||| || || Sbjct 535 CTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 476 Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197 | || || || | ||||| | ||||| ||||||||||| |||||||||||||| Sbjct 475 AATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTA 416 Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257 |||||||| || || ||||| || ||||| ||||| ||||| ||||||||| || ||| Sbjct 415 GCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGT 356 Query 163258 TCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGT 163317 || | || |||||| | || || | || || || | || ||||| ||||| | ||| Sbjct 355 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 296 Query 163318 GTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---C 163374 | |||||||| |||||||| || |||||||| ||||||||||| || ||||| Sbjct 295 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGT 236 Query 163375 GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATG 163434 ||| || || ||| ||||||||| ||||| ||||| | || ||||||||| Sbjct 235 CAAGGACGT---GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 179 Query 163435 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491 ||||||||||| || |||||||||||||||||||| || ||||| ||||||| |||| Sbjct 178 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 122 >seq31551 Length=1713 Score = 279 bits (308), Expect = 6e-70 Identities = 325/438 (74%), Gaps = 7/438 (2%) Strand=Plus/Minus Query 163060 GGTGTA-TTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCT 163118 |||||| ||||| || || || || ||||||||||| ||||| | || || ||| | | Sbjct 1156 GGTGTACTTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTT 1097 Query 163119 TATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGA 163178 ||||| ||||| || || | || || || ||||| | ||||| |||||||| Sbjct 1096 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGA 1037 Query 163179 AGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238 ||| ||||| || || || ||||||||||| || ||||| || ||||||||||| ||||| Sbjct 1036 AGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 977 Query 163239 ATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCAT 163298 | ||||||| || ||||| | || |||||||| ||||| | ||||| || | || Sbjct 976 TAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTAT 917 Query 163299 CTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAA 163358 |||||||||||| | ||| | || ||||| || || | ||||||||||| ||||| Sbjct 916 CTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAA 857 Query 163359 CCAATCCGTCGTTG------ACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCT 163412 |||||| || |||| | | | ||| | || ||| ||| ||||| ||| || | Sbjct 856 CCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCAT 797 Query 163413 TAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACT 163472 |||| | || |||||||||||||||||||| || ||||||||||| |||||||| || Sbjct 796 TAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCT 737 Query 163473 TGACCTTGCTGCTGCTGA 163490 ||||| ||||||| ||| Sbjct 736 AGACCTAGCTGCTGTTGA 719 >seq31730 Length=297 Score = 217 bits (240), Expect = 2e-51 Identities = 224/293 (76%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891 |||||| ||||||||||| || ||| | |||||||| |||||||| ||||||||| Sbjct 4 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 63 Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951 || || || || | || || ||||| |||||| |||| || | |||||||| | Sbjct 64 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGT 123 Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011 || ||||| | |||||||| || |||||||||||||| |||| |||| | || ||||| Sbjct 124 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 183 Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071 || |||||||||||||| |||||||| || || ||| | || || || ||||||||||| Sbjct 184 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 243 Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAG 163124 || || || || ||||||||||| ||||| | || || ||| | | ||||| Sbjct 244 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 296 >seq31523 Length=225 Score = 168 bits (186), Expect = 7e-37 Identities = 158/201 (79%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215 ||||| | ||||| ||||| ||||| ||||| || || || ||||||||||| || ||| Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275 || || ||||||||||| ||||| ||||||||| || ||||| | ||||||||||| Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335 ||||| | ||||| || | |||||||||||||| | ||| | |||||||| ||| Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 163336 AACCTTAACGGTTTCAACTTC 163356 ||||| || |||||||| ||| Sbjct 205 AACCTAAATGGTTTCAATTTC 225 >seq34854 Length=328 Score = 161 bits (178), Expect = 1e-34 Identities = 182/244 (75%), Gaps = 0/244 (0%) Strand=Plus/Plus Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600 || ||||| ||||| |||||||||||| ||| | | ||| | || || || ||| Sbjct 74 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATT 133 Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660 || |||||||| || |||||||| ||||| |||||||| | ||||||||| | || || Sbjct 134 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 193 Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720 || || ||||| ||||| || ||||| ||||| | |||||| ||| ||||| ||| Sbjct 194 CTACTTTATGGAAACAATATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 253 Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780 | || || || || || |||||||| ||| || ||||||| ||||| || || || || Sbjct 254 TTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGT 313 Query 162781 CCTT 162784 |||| Sbjct 314 CCTT 317 >seq134 Length=15115857 Score = 127 bits (140), Expect = 2e-24 Identities = 167/230 (73%), Gaps = 1/230 (0%) Strand=Plus/Minus Query 162544 TGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCA 162603 ||||| ||||| |||||||||||| ||| | | |||| || || || ||||| Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT-CAGCTTCTATATTTATTATTGCC 3765940 Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 ||||||| || |||||||||||||| ||||||||| | | ||| || | || || || Sbjct 3765939 TTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCTA 3765880 Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723 || ||||||||||| || || | || || | |||||| | | | |||| ||| | Sbjct 3765879 CTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTTG 3765820 Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAA 162773 || || || | || |||||||||||| || ||||||| ||||| || || Sbjct 3765819 CATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAA 3765770 >seq203 Length=8626763 Score = 123 bits (136), Expect = 3e-23 Identities = 151/206 (73%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898 ||| ||||||| || ||| |||||||||| |||||||| ||||||||| || || | Sbjct 3756505 AGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTCAGCTC 3756446 Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958 | || | | || ||||| |||||| |||| || | |||||||| || | || Sbjct 3756445 CGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATG 3756386 Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018 | | |||||||| || ||||| || |||| || | |||| | || |||||||| |||| Sbjct 3756385 ATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTATTCCAAGCTGAGC 3756326 Query 163019 ACAACATCCTAATGCACCCCTTCCAT 163044 |||||||||| ||| | || || ||| Sbjct 3756325 ACAACATCCTTATGTATCCATTGCAT 3756300 >seq85 Length=5226098 Score = 123 bits (136), Expect = 3e-23 Identities = 127/165 (77%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGT 163380 |||||||| |||||||| || |||||||| |||||||||||||| ||||| |||| Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285 Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440 || || ||| ||| |||| ||||| |||| | || ||||||||||||||| Sbjct 1123284 CGT---GTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTT 1123228 Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485 ||||| || |||||||||| |||||||| || ||||| ||| || Sbjct 1123227 ATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTACT 1123183 >seq77 Length=8408033 Score = 116 bits (128), Expect = 4e-21 Identities = 233/344 (68%), Gaps = 6/344 (2%) Strand=Plus/Plus Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663 ||||| || || |||||| | ||||| |||||||| | ||||| || | | || || Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723 || ||||| ||||| || ||||| ||||| | |||| | ||| ||||| ||| | Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814 Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCT 162783 || | || || || | ||||||| || | ||||||| ||||| || || || || ||| Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874 Query 162784 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 162843 | | || | || | |||||| | | || | | ||| |||||| ||||| Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934 Query 162844 GAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 162903 |||||| || || |||||||| | ||||||| ||||||||| || || || || Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGT- 2698993 Query 162904 TCTGCA---GCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCA 162944 |||| || | ||| |||||| |||| || | ||||| Sbjct 2698994 --TGCAATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCA 2699035 >seq151 Length=2833985 Score = 100 bits (110), Expect = 3e-16 Identities = 90/112 (80%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236 ||||| ||||| || || || ||||||||||| || ||||| || |||||||||| ||| Sbjct 2328018 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCTATAT 2328077 Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTG 163288 || ||||||||| || ||||| | ||||||||||| ||||| ||| ||| Sbjct 2328078 GCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAGCTGC-TTCACTG 2328128 >seq31544 Length=164 Score = 96.9 bits (106), Expect = 4e-15 Identities = 103/135 (76%), Gaps = 6/135 (4%) Strand=Plus/Plus Query 163359 CCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA 163415 ||||||||| ||||| |||| || || ||| ||| ||||| ||||| |||| Sbjct 1 CCAATCCGTAGTTGATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAA 57 Query 163416 CAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475 | || |||||||||||||||||||| || ||||||||||| |||||||| || || Sbjct 58 TCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 117 Query 163476 CCTTGCTGCTGCTGA 163490 ||| ||||||| ||| Sbjct 118 CCTAGCTGCTGTTGA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 552833312341440