Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_019443.1
Length=172879
Score E
Sequences producing significant alignments: (Bits) Value
seq444 587 8e-163
seq31551 279 6e-70
seq31730 217 2e-51
seq31523 168 7e-37
seq34854 161 1e-34
seq134 127 2e-24
seq203 123 3e-23
seq85 123 3e-23
seq77 116 4e-21
seq151 100 3e-16
seq31544 96.9 4e-15
>seq444
Length=4271
Score = 587 bits (650), Expect = 8e-163
Identities = 706/957 (74%), Gaps = 12/957 (1%)
Strand=Plus/Minus
Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600
|| ||||| ||||| |||||||||||| ||| | | ||| | || || || ||
Sbjct 1072 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATC 1013
Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660
||||||||||| || |||||||| ||||| |||||||| | ||||||||| | || ||
Sbjct 1012 GCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 953
Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720
||||| || || ||||| || || || ||||| | |||||| ||| ||||||||
Sbjct 952 CTTCTTTACGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGA 893
Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780
| || || || || ||||||||||| ||| | ||||||| ||| | || || || ||
Sbjct 892 TTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGT 833
Query 162781 CCTTTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGT 162837
|||| |||| | || | ||||| | | || | ||| | | | ||||||
Sbjct 832 CCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGT 776
Query 162838 CAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCA 162897
||||||||||| || ||| | ||||||||||||||||| ||||||||| || ||
Sbjct 775 GAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCT 716
Query 162898 CCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 162957
|| || | || || ||||| |||||| ||||||| | ||||| || ||| |||
Sbjct 715 CCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCT 656
Query 162958 GACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAG 163017
|| | |||||||| || || ||||||||||| |||| ||| | || ||||| || |||
Sbjct 655 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAG 596
Query 163018 CACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGTGGTTCA 163077
|||||||| || |||||||| || || ||| | || || || ||||||||||| || ||
Sbjct 595 CACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 536
Query 163078 CTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAGAGAAACTACTGAG 163137
|| |||||||||||||| ||||| | || |||||| | | ||||| ||||| || ||
Sbjct 535 CTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAA 476
Query 163138 CAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTT 163197
| || || || | ||||| | ||||| ||||||||||| ||||||||||||||
Sbjct 475 AATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTA 416
Query 163198 GCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGT 163257
|||||||| || || ||||| || ||||| ||||| ||||| ||||||||| || |||
Sbjct 415 GCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGT 356
Query 163258 TCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGT 163317
|| | || |||||| | || || | || || || | || ||||| ||||| | |||
Sbjct 355 TCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGT 296
Query 163318 GTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGA---C 163374
| |||||||| |||||||| || |||||||| ||||||||||| || |||||
Sbjct 295 ATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGT 236
Query 163375 GCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATG 163434
||| || || ||| ||||||||| ||||| ||||| | || |||||||||
Sbjct 235 CAAGGACGT---GTTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATG 179
Query 163435 GAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCTGCTGAG 163491
||||||||||| || |||||||||||||||||||| || ||||| ||||||| ||||
Sbjct 178 GAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 122
>seq31551
Length=1713
Score = 279 bits (308), Expect = 6e-70
Identities = 325/438 (74%), Gaps = 7/438 (2%)
Strand=Plus/Minus
Query 163060 GGTGTA-TTCGGTGGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCT 163118
|||||| ||||| || || || || ||||||||||| ||||| | || || ||| | |
Sbjct 1156 GGTGTACTTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTT 1097
Query 163119 TATCAGAGAAACTACTGAGCAAGAGTCACAGAACTACGGTTATAAGTTCGGACAAGAAGA 163178
||||| ||||| || || | || || || ||||| | ||||| ||||||||
Sbjct 1096 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGA 1037
Query 163179 AGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTATGC 163238
||| ||||| || || || ||||||||||| || ||||| || ||||||||||| |||||
Sbjct 1036 AGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGC 977
Query 163239 ATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTGTGGTCTGCAT 163298
| ||||||| || ||||| | || |||||||| ||||| | ||||| || | ||
Sbjct 976 TAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTAT 917
Query 163299 CTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTCAACCTTAACGGTTTCAACTTCAA 163358
|||||||||||| | ||| | || ||||| || || | ||||||||||| |||||
Sbjct 916 CTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAA 857
Query 163359 CCAATCCGTCGTTG------ACGCAGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCT 163412
|||||| || |||| | | | ||| | || ||| ||| ||||| ||| || |
Sbjct 856 CCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCAT 797
Query 163413 TAACAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACT 163472
|||| | || |||||||||||||||||||| || ||||||||||| |||||||| ||
Sbjct 796 TAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCT 737
Query 163473 TGACCTTGCTGCTGCTGA 163490
||||| ||||||| |||
Sbjct 736 AGACCTAGCTGCTGTTGA 719
>seq31730
Length=297
Score = 217 bits (240), Expect = 2e-51
Identities = 224/293 (76%), Gaps = 0/293 (0%)
Strand=Plus/Plus
Query 162832 GGTCGTCAGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATAC 162891
|||||| ||||||||||| || ||| | |||||||| |||||||| |||||||||
Sbjct 4 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 63
Query 162892 TCTGCACCAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCT 162951
|| || || || | || || ||||| |||||| |||| || | |||||||| |
Sbjct 64 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGT 123
Query 162952 TTCTCTGACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAA 163011
|| ||||| | |||||||| || |||||||||||||| |||| |||| | || |||||
Sbjct 124 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 183
Query 163012 GCAGAGCACAACATCCTAATGCACCCCTTCCATATGATTGGAGTCGCAGGTGTATTCGGT 163071
|| |||||||||||||| |||||||| || || ||| | || || || |||||||||||
Sbjct 184 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 243
Query 163072 GGTTCACTCTTTAGTGCTATGCACGGTTCTCTTGTTACTTCTTCTCTTATCAG 163124
|| || || || ||||||||||| ||||| | || || ||| | | |||||
Sbjct 244 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAG 296
>seq31523
Length=225
Score = 168 bits (186), Expect = 7e-37
Identities = 158/201 (79%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 163156 GGTTATAAGTTCGGACAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTT 163215
||||| | ||||| ||||| ||||| ||||| || || || ||||||||||| || |||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 163216 GGTCGCTTGATCTTCCAGTATGCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTT 163275
|| || ||||||||||| ||||| ||||||||| || ||||| | |||||||||||
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 163276 GCTGCATTCCCTGTGGTCTGCATCTGGTTCACTGCAATGGGTGTGTCAACTATGGCATTC 163335
||||| | ||||| || | |||||||||||||| | ||| | |||||||| |||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 163336 AACCTTAACGGTTTCAACTTC 163356
||||| || |||||||| |||
Sbjct 205 AACCTAAATGGTTTCAATTTC 225
>seq34854
Length=328
Score = 161 bits (178), Expect = 1e-34
Identities = 182/244 (75%), Gaps = 0/244 (0%)
Strand=Plus/Plus
Query 162541 GGTTGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATT 162600
|| ||||| ||||| |||||||||||| ||| | | ||| | || || || |||
Sbjct 74 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACTTCTGTATTTATTATT 133
Query 162601 GCATTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCA 162660
|| |||||||| || |||||||| ||||| |||||||| | ||||||||| | || ||
Sbjct 134 GCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCT 193
Query 162661 CTTCTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGT 162720
|| || ||||| ||||| || ||||| ||||| | |||||| ||| ||||| |||
Sbjct 194 CTACTTTATGGAAACAATATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGT 253
Query 162721 CTTCACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGA 162780
| || || || || || |||||||| ||| || ||||||| ||||| || || || ||
Sbjct 254 TTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGT 313
Query 162781 CCTT 162784
||||
Sbjct 314 CCTT 317
>seq134
Length=15115857
Score = 127 bits (140), Expect = 2e-24
Identities = 167/230 (73%), Gaps = 1/230 (0%)
Strand=Plus/Minus
Query 162544 TGGTTCGGTGTCTTGATGATCCCTTGCTTGCTCGCAGCAGCAACTTGCTTCATCATTGCA 162603
||||| ||||| |||||||||||| ||| | | |||| || || || |||||
Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACT-CAGCTTCTATATTTATTATTGCC 3765940
Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663
||||||| || |||||||||||||| ||||||||| | | ||| || | || || ||
Sbjct 3765939 TTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCTA 3765880
Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723
|| ||||||||||| || || | || || | |||||| | | | |||| ||| |
Sbjct 3765879 CTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTTG 3765820
Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAA 162773
|| || || | || |||||||||||| || ||||||| ||||| || ||
Sbjct 3765819 CATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAA 3765770
>seq203
Length=8626763
Score = 123 bits (136), Expect = 3e-23
Identities = 151/206 (73%), Gaps = 0/206 (0%)
Strand=Plus/Minus
Query 162839 AGTGGGAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCAC 162898
||| ||||||| || ||| |||||||||| |||||||| ||||||||| || || |
Sbjct 3756505 AGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGTTGCATATTCAGCTC 3756446
Query 162899 CAGTATCTGCAGCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCAAGGTTCTTTCTCTG 162958
| || | | || ||||| |||||| |||| || | |||||||| || | ||
Sbjct 3756445 CGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGATTTTATG 3756386
Query 162959 ACGCAATGCCTCTTGGTATTTCTGGTACTTTTAACTACATGTTCGTGTTCCAAGCAGAGC 163018
| | |||||||| || ||||| || |||| || | |||| | || |||||||| ||||
Sbjct 3756385 ATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGTATTCCAAGCTGAGC 3756326
Query 163019 ACAACATCCTAATGCACCCCTTCCAT 163044
|||||||||| ||| | || || |||
Sbjct 3756325 ACAACATCCTTATGTATCCATTGCAT 3756300
>seq85
Length=5226098
Score = 123 bits (136), Expect = 3e-23
Identities = 127/165 (77%), Gaps = 6/165 (4%)
Strand=Plus/Minus
Query 163324 ACTATGGCATTCAACCTTAACGGTTTCAACTTCAACCAATCCGTCGTTGACGC---AGGT 163380
|||||||| |||||||| || |||||||| |||||||||||||| ||||| ||||
Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285
Query 163381 GGTAAAGTGATTCCTACTTGGGCAGATATCCTTAACAGAGCAGGACTTGGTATGGAAGTT 163440
|| || ||| ||| |||| ||||| |||| | || |||||||||||||||
Sbjct 1123284 CGT---GTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTT 1123228
Query 163441 ATGCACGAGCGTAATGCTCACAACTTCCCACTTGACCTTGCTGCT 163485
||||| || |||||||||| |||||||| || ||||| ||| ||
Sbjct 1123227 ATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTACT 1123183
>seq77
Length=8408033
Score = 116 bits (128), Expect = 4e-21
Identities = 233/344 (68%), Gaps = 6/344 (2%)
Strand=Plus/Plus
Query 162604 TTCATTGCAGCACCTCCAGTTGATATCGATGGTATCAGAGAACCTGTTGCAGGTTCACTT 162663
||||| || || |||||| | ||||| |||||||| | ||||| || | | || ||
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 162664 CTCTATGGTAACAACATCATCTCTGGTGCTGTCGTTCCTAGTTCAAATGCTATTGGTCTT 162723
|| ||||| ||||| || ||||| ||||| | |||| | ||| ||||| ||| |
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814
Query 162724 CACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGTTGTATAATGGTGGACCT 162783
|| | || || || | ||||||| || | ||||||| ||||| || || || || |||
Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874
Query 162784 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 162843
| | || | || | |||||| | | || | | ||| |||||| |||||
Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934
Query 162844 GAACTTTCTTACCGCTTAGGTATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTA 162903
|||||| || || |||||||| | ||||||| ||||||||| || || || ||
Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGT- 2698993
Query 162904 TCTGCA---GCATTCGCTGTGTTCTTGGTCTATCCTTTCGGTCA 162944
|||| || | ||| |||||| |||| || | |||||
Sbjct 2698994 --TGCAATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCA 2699035
>seq151
Length=2833985
Score = 100 bits (110), Expect = 3e-16
Identities = 90/112 (80%), Gaps = 1/112 (1%)
Strand=Plus/Plus
Query 163177 GAAGAGACTTACAACATTGTTGCTGCTCATGGATACTTTGGTCGCTTGATCTTCCAGTAT 163236
||||| ||||| || || || ||||||||||| || ||||| || |||||||||| |||
Sbjct 2328018 GAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCTATAT 2328077
Query 163237 GCATCTTTCAACAACTCACGTTCACTTCACTTCTTCCTTGCTGCATTCCCTG 163288
|| ||||||||| || ||||| | ||||||||||| ||||| ||| |||
Sbjct 2328078 GCTAGTTTCAACAATTCTCGTTCGTTACACTTCTTCCTAGCTGC-TTCACTG 2328128
>seq31544
Length=164
Score = 96.9 bits (106), Expect = 4e-15
Identities = 103/135 (76%), Gaps = 6/135 (4%)
Strand=Plus/Plus
Query 163359 CCAATCCGTCGTTGACGC---AGGTGGTAAAGTGATTCCTACTTGGGCAGATATCCTTAA 163415
||||||||| ||||| |||| || || ||| ||| ||||| ||||| ||||
Sbjct 1 CCAATCCGTAGTTGATAGTCAAGGTCGT---GTAATTAATACCTGGGCTGATATTATTAA 57
Query 163416 CAGAGCAGGACTTGGTATGGAAGTTATGCACGAGCGTAATGCTCACAACTTCCCACTTGA 163475
| || |||||||||||||||||||| || ||||||||||| |||||||| || ||
Sbjct 58 TCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGA 117
Query 163476 CCTTGCTGCTGCTGA 163490
||| ||||||| |||
Sbjct 118 CCTAGCTGCTGTTGA 132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 552833312341440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |