Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq161 241 2e-58 >seq161 Length=5110746 Score = 241 bits (266), Expect = 2e-58 Identities = 577/865 (67%), Gaps = 26/865 (3%) Strand=Plus/Minus Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898 |||||| ||||| || | ||||| |||||||| |||||||||| || ||||||| ||| Sbjct 1384687 CTGGTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTC 1384628 Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGT-GTC-AGGCCCATCTGTTC 47952 ||| || ||||||||| || | | |||| ||||| ||| ||| | | Sbjct 1384627 CATCCAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGC------C 1384574 Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 || || | || |||||| |||||||||| | ||||||| |||||| || | Sbjct 1384573 GAGGAGACGGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCAC 1384514 Query 48013 GAGGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCA 48071 |||| |||||| | || | || |||||| |||| || | |||||| || | || Sbjct 1384513 CAGGGCGCACGGG-AGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCA 1384455 Query 48072 CAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131 | ||| | || || ||| || || | ||| || | ||||||| || Sbjct 1384454 CGATCCCCCGCACCCGCTCCTCGCTCGGCTTCCTCTTCAGCAGCGAG---TAGAGCAGGC 1384398 Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191 |||| ||||| | ||| | ||| ||||||||| ||||||| |||| |||||| ||| | Sbjct 1384397 AGGCGAAGTCGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCC 1384338 Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251 | ||||||| || | || ||||||||||| || || |||| ||| |||||||||| Sbjct 1384337 CCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGA 1384278 Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311 ||||||| || ||||| ||| ||| | ||| |||| || || ||| || Sbjct 1384277 TGCCCTCGACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCGGCGCCGTC---GA 1384221 Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371 |||| || |||||||| ||||| || | || | || || | || |||| Sbjct 1384220 CCCAGCGGAGGGCCCAGTCCGCCTTGCGAGCGACGGCGGGGACGGTGTCGACCGCGCGGA 1384161 Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428 ||| | | ||| ||| | | |||| || ||||| ||| || ||||| Sbjct 1384160 AGAGGCGGTCCTT---CTCGGCGGAGTCCTTGACGTAGGTCTCGAGGAGGAGGCTGTACA 1384104 Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488 |||| ||||| | ||||| || ||||||||||| ||||||||||| | |||||| | | Sbjct 1384103 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGA 1384044 Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548 ||| || || | ||| | | || ||||| ||| || || || || || | Sbjct 1384043 GCTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGG 1383984 Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608 | |||||||| |||| || | | ||| |||||||||| || |||||| | | |||| Sbjct 1383983 CGAAGAAGGCGAGGATGTGGGTGACGAAGTGGCGCTCGTCGTCGGTGAGGGAGTCCCAGT 1383924 Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668 | | ||| | | ||||| || || || | ||||||||||| || || || | Sbjct 1383923 GACGGAGGTCCTGGGAGAGGTCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCT 1383864 Query 48669 TGTACATGCCCCATATGTCCGGATA 48693 ||||||| |||| || | ||| || Sbjct 1383863 TGTACATCTCCCAGATCTGCGGGTA 1383839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931109232035840