Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_019491.1
Length=291144
Score E
Sequences producing significant alignments: (Bits) Value
seq161 241 2e-58
>seq161
Length=5110746
Score = 241 bits (266), Expect = 2e-58
Identities = 577/865 (67%), Gaps = 26/865 (3%)
Strand=Plus/Minus
Query 47839 CTGGTAGTCCCCCACTCTATTCTCAAAGAAGTTTGTCTTCCCCTCCAACGAGATGTTCTC 47898
|||||| ||||| || | ||||| |||||||| |||||||||| || ||||||| |||
Sbjct 1384687 CTGGTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTC 1384628
Query 47899 CATGAAGAGGAAGGGGTTGGGTGTGTTATACA----CCCGT-GTC-AGGCCCATCTGTTC 47952
||| || ||||||||| || | | |||| ||||| ||| ||| | |
Sbjct 1384627 CATCCAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGC------C 1384574
Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012
|| || | || |||||| |||||||||| | ||||||| |||||| || |
Sbjct 1384573 GAGGAGACGGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCAC 1384514
Query 48013 GAGGGA-CACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCA 48071
|||| |||||| | || | || |||||| |||| || | |||||| || | ||
Sbjct 1384513 CAGGGCGCACGGG-AGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCA 1384455
Query 48072 CAATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGC 48131
| ||| | || || ||| || || | ||| || | ||||||| ||
Sbjct 1384454 CGATCCCCCGCACCCGCTCCTCGCTCGGCTTCCTCTTCAGCAGCGAG---TAGAGCAGGC 1384398
Query 48132 AGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGAC 48191
|||| ||||| | ||| | ||| ||||||||| ||||||| |||| |||||| ||| |
Sbjct 1384397 AGGCGAAGTCGCAGTGGAGGCCCTCGTCCCGGGAGATGAGCTCGTTCGAGAAGGTGAGCC 1384338
Query 48192 CAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGA 48251
| ||||||| || | || ||||||||||| || || |||| ||| ||||||||||
Sbjct 1384337 CCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAAGAAGA 1384278
Query 48252 TGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGA 48311
||||||| || ||||| ||| ||| | ||| |||| || || ||| ||
Sbjct 1384277 TGCCCTCGACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCGGCGCCGTC---GA 1384221
Query 48312 TCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGCCCGGA 48371
|||| || |||||||| ||||| || | || | || || | || ||||
Sbjct 1384220 CCCAGCGGAGGGCCCAGTCCGCCTTGCGAGCGACGGCGGGGACGGTGTCGACCGCGCGGA 1384161
Query 48372 AGA---GCTTCTTGCACTCACCTGCGTCCGCAACATAGGTAGTGAGCAGCTTTGCGTACA 48428
||| | | ||| ||| | | |||| || ||||| ||| || |||||
Sbjct 1384160 AGAGGCGGTCCTT---CTCGGCGGAGTCCTTGACGTAGGTCTCGAGGAGGAGGCTGTACA 1384104
Query 48429 TCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTCAAACA 48488
|||| ||||| | ||||| || ||||||||||| ||||||||||| | |||||| | |
Sbjct 1384103 TCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGA 1384044
Query 48489 CCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGAAGCAG 48548
||| || || | ||| | | || ||||| ||| || || || || || |
Sbjct 1384043 GCTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGG 1383984
Query 48549 CAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATTCCAGC 48608
| |||||||| |||| || | | ||| |||||||||| || |||||| | | ||||
Sbjct 1383983 CGAAGAAGGCGAGGATGTGGGTGACGAAGTGGCGCTCGTCGTCGGTGAGGGAGTCCCAGT 1383924
Query 48609 CCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGCGAGTGCTTTTT 48668
| | ||| | | ||||| || || || | ||||||||||| || || || |
Sbjct 1383923 GACGGAGGTCCTGGGAGAGGTCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCT 1383864
Query 48669 TGTACATGCCCCATATGTCCGGATA 48693
||||||| |||| || | ||| ||
Sbjct 1383863 TGTACATCTCCCAGATCTGCGGGTA 1383839
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 931109232035840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |