Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq161 190 4e-43 >seq161 Length=5110746 Score = 190 bits (210), Expect = 4e-43 Identities = 556/853 (65%), Gaps = 22/853 (3%) Strand=Plus/Plus Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536 || |||||||||||||||||||| | ||| |||||||||||| ||| |||| || Sbjct 1383848 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTTGACCTC 1383907 Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596 || ||||| | |||| || | || || | ||||||| || || ||| || Sbjct 1383908 TCCCAGGACCTCCGTCACTGGGACTCCCTCACCGACGACGAGCGCCACTTCGTCACCCAC 1383967 Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656 | | || ||||| || ||||| || || || || |||||| || || | ||| Sbjct 1383968 ATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCTTC 1384027 Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716 | | ||| || ||| | |||||| |||||||| |||||||| |||||||| Sbjct 1384028 ATGAAGGAGGTCCAGCTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAG 1384087 Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776 || | ||||| ||| |||| | || || ||| ||| | | ||| ||||||| Sbjct 1384088 AACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACGTCAAGGACTCCGCCGAG 1384147 Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836 | || || || || | || |||| | | ||| | || | |||||| ||| Sbjct 1384148 AAGGACCGCCTCTTCCGCGCGGTCGACACCGTCCCCGCCGTCGCTCGCAAGGCGGACTGG 1384207 Query 25837 GCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895 ||| | ||| || || || | ||| || || |||||| || | ||||| || Sbjct 1384208 GCCCTCCGCTGGGTCGACGGCGCCGAGTCCTTCGC----CGAGCGCCTCCTCGCCTTCGC 1384263 Query 25896 -TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953 ||| || ||||||||||| ||| ||| || ||| |||||||||||||||||| || Sbjct 1384264 CTGC-GTCGAGGGCATCTTCTTCTCCGGCAGTTTCTGC-GCCATCTTCTGGCTCAAGAAG 1384321 Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 || |||||| ||||| ||| || |||||||||||| | |||||||||| ||| Sbjct 1384322 CGCGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTCATCTCCCGGGACGAGGGCCTC 1384381 Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCTCAAG 26071 ||| | || || ||||||||||||||| || |||| | | || | | || Sbjct 1384382 CACTGCGACTTCGCCTGCCTGCTCTACTCG------CTGCTGAAGAGGAAGCCGAGCGAG 1384435 Query 26072 AGACCGTCTAC--AGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129 || || | | | ||| | ||||| ||||| ||||||| |||||| Sbjct 1384436 -GAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 1384494 Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189 |||| |||||| |||||| |||| ||||| |||| Sbjct 1384495 CGCGCTCCCGTGCGCCCTGGTGGGGATGAACCGGGACCTCATGGGCCAGTACATCGAGTT 1384554 Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACT-CGCCAGACTCTACAGTACGCCTAACC 26248 || ||||||| ||| || || || |||| || | | ||||| || |||| Sbjct 1384555 CGTCGCCGACCGTCTCCTCGGCGCCCT-CGACTACGGGAAGATGTACAGCGTCCCGAACC 1384613 Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308 | ||||||| ||||| ||| ||| || | ||||||||||||||||| || ||| ||| Sbjct 1384614 CCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGGG 1384673 Query 26309 TCGGCGACTATCA 26321 |||| || || || Sbjct 1384674 TCGGGGAGTACCA 1384686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928422454269440