Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_019495.1
Length=290304
Score E
Sequences producing significant alignments: (Bits) Value
seq161 190 4e-43
>seq161
Length=5110746
Score = 190 bits (210), Expect = 4e-43
Identities = 556/853 (65%), Gaps = 22/853 (3%)
Strand=Plus/Plus
Query 25477 ATATGGGAGATGTACAAGAAGGCTCAAAACTCAAACTGGACCGCCGAAGAGATTGATCTG 25536
|| |||||||||||||||||||| | ||| |||||||||||| ||| |||| ||
Sbjct 1383848 ATCTGGGAGATGTACAAGAAGGCCGAGGCCTCCTTCTGGACCGCCGAGGAGGTTGACCTC 1383907
Query 25537 GCCAAGGACATGGACGGCTGGTACGCTCTATCCAAAGACGAGCAGCATTTTCTCAAGTAC 25596
|| ||||| | |||| || | || || | ||||||| || || ||| ||
Sbjct 1383908 TCCCAGGACCTCCGTCACTGGGACTCCCTCACCGACGACGAGCGCCACTTCGTCACCCAC 1383967
Query 25597 GTGTTGGCATTCTTTGCAGCCTCTGATGGTATAGTGAACGAGAATCTGTGCGAGAGATTC 25656
| | || ||||| || ||||| || || || || |||||| || || | |||
Sbjct 1383968 ATCCTCGCCTTCTTCGCCGCCTCCGACGGCATCGTCCTCGAGAACCTCGCCGTCCGCTTC 1384027
Query 25657 ACCAGGGAAGTGCAGTACGTGGAGGCCAAGTGTTTCTACGGTTTCCAGATGGCCATCGAA 25716
| | ||| || ||| | |||||| |||||||| |||||||| ||||||||
Sbjct 1384028 ATGAAGGAGGTCCAGCTCTCCGAGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAG 1384087
Query 25717 AATGTGCACTCTGAGGTGTATGCCAAGCTTCTGATGACGTACATTACAGACGTCGCCGAG 25776
|| | ||||| ||| |||| | || || ||| ||| | | ||| |||||||
Sbjct 1384088 AACATCCACTCCGAGATGTACAGCCTCCTCCTCGAGACCTACGTCAAGGACTCCGCCGAG 1384147
Query 25777 AGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGG 25836
| || || || || | || |||| | | ||| | || | |||||| |||
Sbjct 1384148 AAGGACCGCCTCTTCCGCGCGGTCGACACCGTCCCCGCCGTCGCTCGCAAGGCGGACTGG 1384207
Query 25837 GCCATGAAGTGGATCAACAGC-CAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGC 25895
||| | ||| || || || | ||| || || |||||| || | ||||| ||
Sbjct 1384208 GCCCTCCGCTGGGTCGACGGCGCCGAGTCCTTCGC----CGAGCGCCTCCTCGCCTTCGC 1384263
Query 25896 -TGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTT-TGCGGCCATCTTCTGGCTCAAGCAG 25953
||| || ||||||||||| ||| ||| || ||| |||||||||||||||||| ||
Sbjct 1384264 CTGC-GTCGAGGGCATCTTCTTCTCCGGCAGTTTCTGC-GCCATCTTCTGGCTCAAGAAG 1384321
Query 25954 AAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013
|| |||||| ||||| ||| || |||||||||||| | |||||||||| |||
Sbjct 1384322 CGCGGCCTCATGCCGGGGCTCACCTTCTCGAACGAGCTCATCTCCCGGGACGAGGGCCTC 1384381
Query 26014 CACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCCACA--AACCTTCTCAAG 26071
||| | || || ||||||||||||||| || |||| | | || | | ||
Sbjct 1384382 CACTGCGACTTCGCCTGCCTGCTCTACTCG------CTGCTGAAGAGGAAGCCGAGCGAG 1384435
Query 26072 AGACCGTCTAC--AGTATCATCAAAGAGGCTGTGGAGATCGAGAAGGAGTTTCNNNNNNN 26129
|| || | | | ||| | ||||| ||||| ||||||| ||||||
Sbjct 1384436 -GAGCGGGTGCGGGGGATCGTGCGCGAGGCCGTGGACATCGAGAGGGAGTTCGTCTGCGA 1384494
Query 26130 NNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGAGCCAATACATTGAGTA 26189
|||| |||||| |||||| |||| ||||| ||||
Sbjct 1384495 CGCGCTCCCGTGCGCCCTGGTGGGGATGAACCGGGACCTCATGGGCCAGTACATCGAGTT 1384554
Query 26190 TGTGGCCGACCATCTGCTGTGCCAGCTGGGACT-CGCCAGACTCTACAGTACGCCTAACC 26248
|| ||||||| ||| || || || |||| || | | ||||| || ||||
Sbjct 1384555 CGTCGCCGACCGTCTCCTCGGCGCCCT-CGACTACGGGAAGATGTACAGCGTCCCGAACC 1384613
Query 26249 CGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCAACTTCTTTGAAAAGAGGG 26308
| ||||||| ||||| ||| ||| || | ||||||||||||||||| || ||| |||
Sbjct 1384614 CCTTCGACTGGATGGAGCTCATCTCGCTGCAGGGGAAGACCAACTTCTTCGAGAAGCGGG 1384673
Query 26309 TCGGCGACTATCA 26321
|||| || || ||
Sbjct 1384674 TCGGGGAGTACCA 1384686
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 928422454269440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |