Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_019711.1 Length=47288 Score E Sequences producing significant alignments: (Bits) Value seq22652 183 9e-42 seq21163 183 9e-42 seq13007 183 9e-42 >seq22652 Length=101 Score = 183 bits (202), Expect = 9e-42 Identities = 101/101 (100%), Gaps = 0/101 (0%) Strand=Plus/Minus Query 22943 AGCTTGGCTGTATAGTCAACTAACTCTTCTGTCGAAGTGATATTTTTAGGCTTATCTACC 23002 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 101 AGCTTGGCTGTATAGTCAACTAACTCTTCTGTCGAAGTGATATTTTTAGGCTTATCTACC 42 Query 23003 AGTTTTAGACGCTCTTTAATATCTTCAGGAATTATTTTATT 23043 ||||||||||||||||||||||||||||||||||||||||| Sbjct 41 AGTTTTAGACGCTCTTTAATATCTTCAGGAATTATTTTATT 1 >seq21163 Length=101 Score = 183 bits (202), Expect = 9e-42 Identities = 101/101 (100%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 27195 GTGTGGGGAAGTCGTGAAAGAAAAGAAGTCAGCTGCGTCGTTTGACATCACTGCTATCTT 27254 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 GTGTGGGGAAGTCGTGAAAGAAAAGAAGTCAGCTGCGTCGTTTGACATCACTGCTATCTT 60 Query 27255 CTTACTGGTTATGCAGGTCGTAGTGGGTGGCACACAAAGCT 27295 ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 CTTACTGGTTATGCAGGTCGTAGTGGGTGGCACACAAAGCT 101 >seq13007 Length=101 Score = 183 bits (202), Expect = 9e-42 Identities = 101/101 (100%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 24970 AGCTTTTCTAATTTAACCTTTGTCAGGTTACCAACTACTAAGGTTGTAGGCTCAAGAGGG 25029 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1 AGCTTTTCTAATTTAACCTTTGTCAGGTTACCAACTACTAAGGTTGTAGGCTCAAGAGGG 60 Query 25030 TGTGTCCTGTCGTAGGTAAATAACTGACCTGTCGAGCTTAA 25070 ||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGTGTCCTGTCGTAGGTAAATAACTGACCTGTCGAGCTTAA 101 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151134686892000