Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_019945.1
Length=132978
Score E
Sequences producing significant alignments: (Bits) Value
seq49 98.7 8e-16
seq652 95.1 1e-14
seq203 87.8 2e-12
>seq49
Length=4798478
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| || || | || || ||||| || || ||| || ||
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671
|| || | | | || |||| ||||||| || |||||||| || | ||| ||||
Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAATTCAG-GACAAAGAAGGCATTCCCCCGGATC 2870031
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
| ||||| ||||| ||||| || ||||| | |||||| || ||| |||| |||||||
Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762
|||| || ||||| || ||||| ||| ||||
Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122
>seq652
Length=2384379
Score = 95.1 bits (104), Expect = 1e-14
Identities = 149/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
||||||||| ||||| || || |||| || || || || ||| ||| || ||
Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116
Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671
|| || | | | || |||| || |||| || ||||| || || | ||| |||||
Sbjct 465117 TGACACCATTGACAATGTCAAAGCGAAAATTCAG-GACAAGGAAGGCATTCCCCCAGATC 465175
Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731
| || || ||||||||||| || |||||| | || ||| || ||| |||| |||||||
Sbjct 465176 AGCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATA 465235
Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762
|||| || || || || ||||| ||| ||||
Sbjct 465236 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 465266
Score = 91.5 bits (100), Expect = 1e-13
Identities = 146/210 (70%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612
|||||| || ||||| || || | || || || ||||| || || ||| |||
Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572
Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
||| || | | | || | ||| ||| ||| ||||| ||||| | || ||| ||
Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 465632
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| || || ||||| || || ||| ||||||| | || |||||||||||||
Sbjct 465633 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATAA 465692
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762
||| || ||||| || ||||||||| ||||
Sbjct 465693 CATCCAGAAAGAGTCAACTCTGCACTTGGT 465722
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| || || ||||| | || || || ||||| ||| || ||| ||||
Sbjct 464374 ATGCAAATTTTCGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGTTCA 464433
Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673
|| || || | | || | ||| || || ||||| || ||| | ||| || ||
Sbjct 464434 GACACAGTTGACAATGTGAAGGCCAAGATACAAGACAAGGAAGGAATCCCCCCGGACCAG 464493
Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733
||||| ||||||||||| ||||| || | || ||| ||| |||| |||||||||
Sbjct 464494 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGACGCACTTTGGCTGATTATAAC 464553
Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762
||||| || ||||| || || ||| ||||
Sbjct 464554 ATTCAGAAGGAATCCACCCTCCACTTGGT 464582
>seq203
Length=8626763
Score = 87.8 bits (96), Expect = 2e-12
Identities = 147/210 (70%), Gaps = 2/210 (1%)
Strand=Plus/Plus
Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613
|||||||| ||||| ||||| | ||||| || || || ||| || |||| ||
Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989
Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672
|| || | | || | || ||||||| || ||||| || || | || || ||
Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAA-GACAAGGAAGGGATCCCTCCGGACCA 5730048
Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732
||||| ||||||||||| ||||| || | |||||| ||| |||||||||||||
Sbjct 5730049 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAA 5730108
Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762
|||||| || || ||||| || ||| ||||
Sbjct 5730109 CATTCAGAAGGAGTCTACCCTCCACTTGGT 5730138
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 425216204226504
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |