Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_019945.1 Length=132978 Score E Sequences producing significant alignments: (Bits) Value seq49 98.7 8e-16 seq652 95.1 1e-14 seq203 87.8 2e-12 >seq49 Length=4798478 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || | || || ||||| || || ||| || || Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| ||||||| || |||||||| || | ||| |||| Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAATTCAG-GACAAAGAAGGCATTCCCCCGGATC 2870031 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | ||||| ||||| ||||| || ||||| | |||||| || ||| |||| ||||||| Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || ||||| || ||||| ||| |||| Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122 >seq652 Length=2384379 Score = 95.1 bits (104), Expect = 1e-14 Identities = 149/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 ||||||||| ||||| || || |||| || || || || ||| ||| || || Sbjct 465057 AATGCAAATCTTTGTCAAGACCCTAACTGGGAAGACGATCACCTTGGAAGTTGAGAGCTC 465116 Query 28613 AGAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATC 28671 || || | | | || |||| || |||| || ||||| || || | ||| ||||| Sbjct 465117 TGACACCATTGACAATGTCAAAGCGAAAATTCAG-GACAAGGAAGGCATTCCCCCAGATC 465175 Query 28672 AACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATA 28731 | || || ||||||||||| || |||||| | || ||| || ||| |||| ||||||| Sbjct 465176 AGCAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATA 465235 Query 28732 ACATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||| || || || || ||||| ||| |||| Sbjct 465236 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 465266 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 28553 AATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTC 28612 |||||| || ||||| || || | || || || ||||| || || ||| ||| Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572 Query 28613 AGAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 ||| || | | | || | ||| ||| ||| ||||| ||||| | || ||| || Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 465632 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| || || ||||| || || ||| ||||||| | || ||||||||||||| Sbjct 465633 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATAA 465692 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||| || ||||| || ||||||||| |||| Sbjct 465693 CATCCAGAAAGAGTCAACTCTGCACTTGGT 465722 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| || || ||||| | || || || ||||| ||| || ||| |||| Sbjct 464374 ATGCAAATTTTCGTGAAAACCCTTACTGGCAAGACCATCACCCTTGAGGTTGAAAGTTCA 464433 Query 28614 GAGACGGTGGCCGATCTCAAGCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCAA 28673 || || || | | || | ||| || || ||||| || ||| | ||| || || Sbjct 464434 GACACAGTTGACAATGTGAAGGCCAAGATACAAGACAAGGAAGGAATCCCCCCGGACCAG 464493 Query 28674 CAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAC 28733 ||||| ||||||||||| ||||| || | || ||| ||| |||| ||||||||| Sbjct 464494 CAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAGGATGGACGCACTTTGGCTGATTATAAC 464553 Query 28734 ATTCAAAAAGAATCTACTCTGCACATGGT 28762 ||||| || ||||| || || ||| |||| Sbjct 464554 ATTCAGAAGGAATCCACCCTCCACTTGGT 464582 >seq203 Length=8626763 Score = 87.8 bits (96), Expect = 2e-12 Identities = 147/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 28554 ATGCAAATATTTGTAAAAACATTAACGGGTAAAACCATTACCGCCGAAACGGAACCTTCA 28613 |||||||| ||||| ||||| | ||||| || || || ||| || |||| || Sbjct 5729930 ATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAAAGCTCC 5729989 Query 28614 GAGACGGTGGCCGATCTCAA-GCAAAAAATCGCCGACAAAGAGGGAGTGCCCGTAGATCA 28672 || || | | || | || ||||||| || ||||| || || | || || || Sbjct 5729990 GACACAATCGATAATGTAAAAGCAAAAATTCAA-GACAAGGAAGGGATCCCTCCGGACCA 5730048 Query 28673 ACAGAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 28732 ||||| ||||||||||| ||||| || | |||||| ||| ||||||||||||| Sbjct 5730049 GCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGATTATAA 5730108 Query 28733 CATTCAAAAAGAATCTACTCTGCACATGGT 28762 |||||| || || ||||| || ||| |||| Sbjct 5730109 CATTCAGAAGGAGTCTACCCTCCACTTGGT 5730138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 425216204226504