Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020835.1 Length=47325 Score E Sequences producing significant alignments: (Bits) Value seq444 518 1e-142 seq31730 199 1e-46 seq31551 183 9e-42 seq34854 179 1e-40 seq203 156 1e-33 seq77 156 1e-33 seq31523 123 8e-24 seq85 109 2e-19 >seq444 Length=4271 Score = 518 bits (574), Expect = 1e-142 Identities = 710/987 (72%), Gaps = 6/987 (1%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||| ||||||||||| || ||||||||||| | |||||||| Sbjct 131 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 190 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | ||| | | |||||||| ||| | || ||||| | | || | || Sbjct 191 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 250 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013 ||||||||| ||||| ||||| || || ||||||||||| || || | || |||| Sbjct 251 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 310 Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073 ||| || | || |||||||| || ||||||||||||| | | |||||| || Sbjct 311 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 370 Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133 |||||||| ||||| || | || ||||| || || ||||| || ||||| || || || Sbjct 371 ACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 430 Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193 ||||||||||| || ||| | || || | || ||| ||| || || ||||| || Sbjct 431 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 490 Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253 || | ||||| || | || ||||||||| || | | || |||||||| Sbjct 491 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATAC 550 Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313 || || ||||| | ||| || || || |||||||| || ||||| || || |||||||| Sbjct 551 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 610 Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373 | ||| || ||||||||||| || || ||||||||||||||||| ||||| || || Sbjct 611 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 670 Query 18374 TCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430 |||| ||||| | | ||||| || || || |||||||| || || || ||||| || Sbjct 671 ACCAATTGGATAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 727 Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490 |||| |||||| || |||||||| || | ||||||||||||| | || ||||| || Sbjct 728 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 787 Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550 | || | || | | |||||| | ||||| |||| ||| || || ||||| |||| Sbjct 788 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAG 847 Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610 ||| || || | || ||||||||||||||||||||| || || | || || || ||| Sbjct 848 CCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGA 907 Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670 | || | || || || || || || |||||||| || || | | ||| || ||||| Sbjct 908 AGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 967 Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730 |||||||||||||| || || || ||||||||||||| ||||| || | ||| | | Sbjct 968 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA 1027 Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790 || |||||| || | | ||||||||| | || |||||||| || | ||| || ||||| Sbjct 1028 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1087 Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817 | || || || | ||||| ||| || Sbjct 1088 TTCAGTGCTAGTTATCCAGTTACAGAA 1114 >seq31730 Length=297 Score = 199 bits (220), Expect = 1e-46 Identities = 210/271 (77%), Gaps = 4/271 (1%) Strand=Plus/Minus Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278 || ||||||||| ||||| | || |||||||| || || || || | ||| || || Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210 Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338 || ||||||||||| ||||| || || |||||||| | |||||| ||||||||||| | Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150 Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATAC 18397 || || ||||||||||||||||| ||||| ||||| |||| || || | | ||||| || Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAA-AC 91 Query 18398 TG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTA 18456 | || | |||||||| || || || ||||| |||||| |||||| ||||||||||| | Sbjct 90 AGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCA 32 Query 18457 GTCTATAACTAAGTTCCCATTGTCGTCCCAT 18487 | | ||||||||||||| | || ||||| Sbjct 31 GACGGAAACTAAGTTCCCACTCACGACCCAT 1 >seq31551 Length=1713 Score = 183 bits (202), Expect = 9e-42 Identities = 313/443 (71%), Gaps = 21/443 (5%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| |||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 727 AGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 786 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATG---TAGGTAC--GA-CTTGTCCT---CCAGCTGC 17944 ||| | ||| | | |||||||| | || ||| || ||| |||| | | | | Sbjct 787 AGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGACTATCAAC 846 Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004 |||| ||||||||||| ||||| || || | | ||||||||| ||| || || | Sbjct 847 TACA---GATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATACCTAA 903 Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064 || || | ||| || | || ||||||||||| | ||||||||||| | Sbjct 904 AGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGA 963 Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124 |||||| | |||||||| |||||||| | || ||||| || |||||||| || || || Sbjct 964 ATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGAT 1023 Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184 |||||| || ||||||||||| || ||| | || || || ||| ||| || || Sbjct 1024 ATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTACATTAGCAGATTCATTTTCTGT 1083 Query 18185 CGTTTCTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 18241 ||||| || || || | |||| || |||| || ||||||||| ||||| || Sbjct 1084 GGTTTCCCTGATCAAACTAGAGG--TTACCAAG-GAACCATGCATAGCACTGAATAGAGA 1140 Query 18242 TCCACCGAA-TACCCCTGCAACA 18263 || ||||| ||| || ||||| Sbjct 1141 GCCGCCGAAGTACACC--CAACA 1161 >seq34854 Length=328 Score = 179 bits (198), Expect = 1e-40 Identities = 218/297 (73%), Gaps = 0/297 (0%) Strand=Plus/Minus Query 18521 AATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 18580 ||| || | ||| || || ||||| |||||||| || || | | ||| |||||||| || Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATAT 269 Query 18581 TGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTT 18640 |||||| || || | ||| || || ||| | || | || || || || || || || Sbjct 268 TGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATT 209 Query 18641 GTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGG 18700 ||||||||| |||| | ||| || ||||| |||||||||||||| || || || ||||| Sbjct 208 GTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGG 149 Query 18701 AGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAG 18760 |||||||| || ||||| | |||| | | || |||||| || | | ||||||||| | Sbjct 148 AGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 89 Query 18761 TACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817 || |||||||| || | ||| || ||||| | || || || | ||||| ||| || Sbjct 88 AACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32 >seq203 Length=8626763 Score = 156 bits (172), Expect = 1e-33 Identities = 171/222 (77%), Gaps = 4/222 (2%) Strand=Plus/Plus Query 18272 ATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGT 18331 ||| || |||| ||||||||| ||||| || ||||||||||| | |||||||||||||| Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359 Query 18332 ACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGA 18390 || | ||| || ||||||||| ||||| | || || ||||| |||| || || | | | Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419 Query 18391 GAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGC 18449 |||| || | || | |||| ||| || || || ||||| |||||| |||||| |||||| Sbjct 3756420 GAAA-ACAGCAGTA-GCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGC 3756477 Query 18450 ATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491 |||||||| | ||||||||||| | | ||||||||| Sbjct 3756478 ATACCTAGACGGAAACTAAGTTCCTACTCATAACCCATGTAA 3756519 >seq77 Length=8408033 Score = 156 bits (172), Expect = 1e-33 Identities = 254/363 (70%), Gaps = 2/363 (1%) Strand=Plus/Minus Query 18345 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAA 18403 |||||||||| |||| | ||||| || |||| || || | | ||||| || | Sbjct 2699062 AGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAA-ACAATAAT 2699004 Query 18404 GGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATA 18463 ||| ||| || || || ||||| |||||| |||||| | || ||||||||| | | | Sbjct 2699003 AGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAA 2698944 Query 18464 ACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAAT 18523 |||||||||||| | || ||||||||| || | || | | ||||| | ||||| Sbjct 2698943 ACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAAT 2698884 Query 18524 GAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 18583 || | ||| || || ||||| |||||||| || || | | || |||||| | ||||| Sbjct 2698883 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTACATTGG 2698824 Query 18584 GTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTT 18643 ||| | || | ||| || || ||| | || | || || || || || || ||||| Sbjct 2698823 GTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTGTT 2698764 Query 18644 TCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGC 18703 |||||| |||| | || || | ||| | ||||||||||| || || | |||||||| Sbjct 2698763 TCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGAGGAGC 2698704 Query 18704 AGC 18706 ||| Sbjct 2698703 AGC 2698701 >seq31523 Length=225 Score = 123 bits (136), Expect = 8e-24 Identities = 148/201 (74%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 17960 GAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 18019 ||| ||||| ||||| || || |||||||||||| ||| || | || || | ||| || Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166 Query 18020 GCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGC 18079 | || ||||||||||| | |||||| |||| | | |||||| || ||||| Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106 Query 18080 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTC 18139 ||| |||||||| | || ||||| || |||||||| || || |||||||| || ||||| Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46 Query 18140 TTCTTGGCCAAATTTATATCC 18160 ||||| || ||| | || || Sbjct 45 CTCTTGACCGAATCTGTAACC 25 >seq85 Length=5226098 Score = 109 bits (120), Expect = 2e-19 Identities = 125/168 (74%), Gaps = 0/168 (0%) Strand=Plus/Plus Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893 ||||| ||||| ||||||||||||||||||| || ||||||||||| | |||||||| Sbjct 1123186 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTT 1123245 Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953 ||| | || | | ||| |||||||| | || | ||| | | || | ||| Sbjct 1123246 AGCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGA 1123305 Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCC 18001 ||||||||| ||||| ||||| || || |||||||||||| ||| || Sbjct 1123306 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151253035747344