Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_020835.1
Length=47325
Score E
Sequences producing significant alignments: (Bits) Value
seq444 518 1e-142
seq31730 199 1e-46
seq31551 183 9e-42
seq34854 179 1e-40
seq203 156 1e-33
seq77 156 1e-33
seq31523 123 8e-24
seq85 109 2e-19
>seq444
Length=4271
Score = 518 bits (574), Expect = 1e-142
Identities = 710/987 (72%), Gaps = 6/987 (1%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||| ||||||||||| || ||||||||||| | ||||||||
Sbjct 131 AGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 190
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | ||| | | |||||||| ||| | || ||||| | | || | ||
Sbjct 191 AGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGA 250
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAG 18013
||||||||| ||||| ||||| || || ||||||||||| || || | || ||||
Sbjct 251 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAA 310
Query 18014 CCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAA 18073
||| || | || |||||||| || ||||||||||||| | | |||||| ||
Sbjct 311 CCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAA 370
Query 18074 GCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGT 18133
|||||||| ||||| || | || ||||| || || ||||| || ||||| || || ||
Sbjct 371 ACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGT 430
Query 18134 CTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGTCGTTTCTCT 18193
||||||||||| || ||| | || || | || ||| ||| || || ||||| ||
Sbjct 431 TTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCT 490
Query 18194 AATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATAC 18253
|| | ||||| || | || ||||||||| || | | || ||||||||
Sbjct 491 GATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATAC 550
Query 18254 CCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATAC 18313
|| || ||||| | ||| || || || |||||||| || ||||| || || ||||||||
Sbjct 551 ACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATAC 610
Query 18314 GAACATGAAATTGAAAGTACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTG 18373
| ||| || ||||||||||| || || ||||||||||||||||| ||||| || ||
Sbjct 611 AATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTG 670
Query 18374 TCCAAAAGGATA-AACGAGAAATACTGAGAAG--GCAGCTGCTACTGGTGCGGAATAAGC 18430
|||| ||||| | | ||||| || || || |||||||| || || || ||||| ||
Sbjct 671 ACCAATTGGATAGATCAAGAAA-AC--AGCAGTCGCAGCTGCAACAGGAGCTGAATATGC 727
Query 18431 AACACAAATCCACGGGCGCATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTA 18490
|||| |||||| || |||||||| || | ||||||||||||| | || ||||| ||
Sbjct 728 AACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATA 787
Query 18491 AGCTGCGATGCCGATGAGAAAGTGGAACACAATGAGTTGATATGGTCCTCCGTTATATAA 18550
| || | || | | |||||| | ||||| |||| ||| || || ||||| ||||
Sbjct 788 ACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAG 847
Query 18551 CCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAGA 18610
||| || || | || ||||||||||||||||||||| || || | || || || |||
Sbjct 848 CCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGA 907
Query 18611 TGACGGGACGATTGCCCCTGATATGATGTTGTTTCCATAGAGTAAGGCTCCTGAGACAGG 18670
| || | || || || || || || |||||||| || || | | ||| || |||||
Sbjct 908 AGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGG 967
Query 18671 CTCACGAATACCATCTATGTCAACGGGAGGAGCAGCAACAAATGCAATCAAAAATGCTGT 18730
|||||||||||||| || || || ||||||||||||| ||||| || | ||| | |
Sbjct 968 TTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGA 1027
Query 18731 AGCTGCGGTTAAAAGTGCAGGGATCATAAGTACCCCAAACCACCCCACGTAGAGGCGGTT 18790
|| |||||| || | | ||||||||| | || |||||||| || | ||| || |||||
Sbjct 1028 AGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTT 1087
Query 18791 GTTTGTACTCGTAACCCAGTCACATAA 18817
| || || || | ||||| ||| ||
Sbjct 1088 TTCAGTGCTAGTTATCCAGTTACAGAA 1114
>seq31730
Length=297
Score = 199 bits (220), Expect = 1e-46
Identities = 210/271 (77%), Gaps = 4/271 (1%)
Strand=Plus/Minus
Query 18219 CCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATATGGAAC 18278
|| ||||||||| ||||| | || |||||||| || || || || | ||| || ||
Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210
Query 18279 GGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGTACCGCTA 18338
|| ||||||||||| ||||| || || |||||||| | |||||| ||||||||||| |
Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150
Query 18339 ATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGAGAAATAC 18397
|| || ||||||||||||||||| ||||| ||||| |||| || || | | ||||| ||
Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAA-AC 91
Query 18398 TG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTA 18456
| || | |||||||| || || || ||||| |||||| |||||| ||||||||||| |
Sbjct 90 AGCAGTA-GCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCA 32
Query 18457 GTCTATAACTAAGTTCCCATTGTCGTCCCAT 18487
| | ||||||||||||| | || |||||
Sbjct 31 GACGGAAACTAAGTTCCCACTCACGACCCAT 1
>seq31551
Length=1713
Score = 183 bits (202), Expect = 9e-42
Identities = 313/443 (71%), Gaps = 21/443 (5%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| |||||||||||||||||||| || ||||||||||| | ||||||||
Sbjct 727 AGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTT 786
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATG---TAGGTAC--GA-CTTGTCCT---CCAGCTGC 17944
||| | ||| | | |||||||| | || ||| || ||| |||| | | | |
Sbjct 787 AGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGACTATCAAC 846
Query 17945 TACAATGGATTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCAT 18004
|||| ||||||||||| ||||| || || | | ||||||||| ||| || || |
Sbjct 847 TACA---GATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATACCTAA 903
Query 18005 AGAGGTAAGCCATATGCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCT 18064
|| || | ||| || | || ||||||||||| | ||||||||||| |
Sbjct 904 AGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGA 963
Query 18065 ATTGTTAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAAT 18124
|||||| | |||||||| |||||||| | || ||||| || |||||||| || || ||
Sbjct 964 ATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGAT 1023
Query 18125 ATTATACGTCTCTTCTTCTTGGCCAAATTTATATCCATAGTTCTGAGACTCAAGCTCAGT 18184
|||||| || ||||||||||| || ||| | || || || ||| ||| || ||
Sbjct 1024 ATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTACATTAGCAGATTCATTTTCTGT 1083
Query 18185 CGTTTCTCTAAT--AAGT-GAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGC 18241
||||| || || || | |||| || |||| || ||||||||| ||||| ||
Sbjct 1084 GGTTTCCCTGATCAAACTAGAGG--TTACCAAG-GAACCATGCATAGCACTGAATAGAGA 1140
Query 18242 TCCACCGAA-TACCCCTGCAACA 18263
|| ||||| ||| || |||||
Sbjct 1141 GCCGCCGAAGTACACC--CAACA 1161
>seq34854
Length=328
Score = 179 bits (198), Expect = 1e-40
Identities = 218/297 (73%), Gaps = 0/297 (0%)
Strand=Plus/Minus
Query 18521 AATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGAT 18580
||| || | ||| || || ||||| |||||||| || || | | ||| |||||||| ||
Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATAT 269
Query 18581 TGGGTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTT 18640
|||||| || || | ||| || || ||| | || | || || || || || || ||
Sbjct 268 TGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATT 209
Query 18641 GTTTCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGG 18700
||||||||| |||| | ||| || ||||| |||||||||||||| || || || |||||
Sbjct 208 GTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGG 149
Query 18701 AGCAGCAACAAATGCAATCAAAAATGCTGTAGCTGCGGTTAAAAGTGCAGGGATCATAAG 18760
|||||||| || ||||| | |||| | | || |||||| || | | ||||||||| |
Sbjct 148 AGCAGCAATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAA 89
Query 18761 TACCCCAAACCACCCCACGTAGAGGCGGTTGTTTGTACTCGTAACCCAGTCACATAA 18817
|| |||||||| || | ||| || ||||| | || || || | ||||| ||| ||
Sbjct 88 AACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32
>seq203
Length=8626763
Score = 156 bits (172), Expect = 1e-33
Identities = 171/222 (77%), Gaps = 4/222 (2%)
Strand=Plus/Plus
Query 18272 ATGGAACGGATGCATAAGGATATTGTGTTCGGCTTGGAATACGAACATGAAATTGAAAGT 18331
||| || |||| ||||||||| ||||| || ||||||||||| | ||||||||||||||
Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359
Query 18332 ACCGCTAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATA-AACGA 18390
|| | ||| || ||||||||| ||||| | || || ||||| |||| || || | | |
Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419
Query 18391 GAAATACTG-AGAAGGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGC 18449
|||| || | || | |||| ||| || || || ||||| |||||| |||||| ||||||
Sbjct 3756420 GAAA-ACAGCAGTA-GCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGC 3756477
Query 18450 ATACCTAGTCTATAACTAAGTTCCCATTGTCGTCCCATGTAA 18491
|||||||| | ||||||||||| | | |||||||||
Sbjct 3756478 ATACCTAGACGGAAACTAAGTTCCTACTCATAACCCATGTAA 3756519
>seq77
Length=8408033
Score = 156 bits (172), Expect = 1e-33
Identities = 254/363 (70%), Gaps = 2/363 (1%)
Strand=Plus/Minus
Query 18345 AGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGATAAA-CGAGAAATACTGAGAA 18403
|||||||||| |||| | ||||| || |||| || || | | ||||| || |
Sbjct 2699062 AGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAA-ACAATAAT 2699004
Query 18404 GGCAGCTGCTACTGGTGCGGAATAAGCAACACAAATCCACGGGCGCATACCTAGTCTATA 18463
||| ||| || || || ||||| |||||| |||||| | || ||||||||| | | |
Sbjct 2699003 AGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAA 2698944
Query 18464 ACTAAGTTCCCATTGTCGTCCCATGTAAGCTGCGATGCCGATGAGAAAGTGGAACACAAT 18523
|||||||||||| | || ||||||||| || | || | | ||||| | |||||
Sbjct 2698943 ACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAAT 2698884
Query 18524 GAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGG 18583
|| | ||| || || ||||| |||||||| || || | | || |||||| | |||||
Sbjct 2698883 TAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTACATTGG 2698824
Query 18584 GTAGAAGTGAAGACCGATTGCGTTAGATGACGGGACGATTGCCCCTGATATGATGTTGTT 18643
||| | || | ||| || || ||| | || | || || || || || || |||||
Sbjct 2698823 GTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTGTT 2698764
Query 18644 TCCATAGAGTAAGGCTCCTGAGACAGGCTCACGAATACCATCTATGTCAACGGGAGGAGC 18703
|||||| |||| | || || | ||| | ||||||||||| || || | ||||||||
Sbjct 2698763 TCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGAGGAGC 2698704
Query 18704 AGC 18706
|||
Sbjct 2698703 AGC 2698701
>seq31523
Length=225
Score = 123 bits (136), Expect = 8e-24
Identities = 148/201 (74%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 17960 GAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATAT 18019
||| ||||| ||||| || || |||||||||||| ||| || | || || | ||| ||
Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166
Query 18020 GCAAGTGACGGGCCAAGCAGCCAAGAAGAAATGTAGACTCCTGCTATTGTTAAAGCTAGC 18079
| || ||||||||||| | |||||| |||| | | |||||| || |||||
Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106
Query 18080 ATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATATTATACGTCTCTTC 18139
||| |||||||| | || ||||| || |||||||| || || |||||||| || |||||
Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46
Query 18140 TTCTTGGCCAAATTTATATCC 18160
||||| || ||| | || ||
Sbjct 45 CTCTTGACCGAATCTGTAACC 25
>seq85
Length=5226098
Score = 109 bits (120), Expect = 2e-19
Identities = 125/168 (74%), Gaps = 0/168 (0%)
Strand=Plus/Plus
Query 17834 AGCTAAATCTAGCGGGAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCAAGGTT 17893
||||| ||||| ||||||||||||||||||| || ||||||||||| | ||||||||
Sbjct 1123186 AGCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTT 1123245
Query 17894 AGCTCTGTTGAGTACGTCAGCCCATGTAGGTACGACTTGTCCTCCAGCTGCTACAATGGA 17953
||| | || | | ||| |||||||| | || | ||| | | || | |||
Sbjct 1123246 AGCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGA 1123305
Query 17954 TTGGTTGAAGTTGAATCCATTGAGATTAAAAGCCATAGTGGAGATTCC 18001
||||||||| ||||| ||||| || || |||||||||||| ||| ||
Sbjct 1123306 TTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 151253035747344
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