Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020838.1 Length=45728 Score E Sequences producing significant alignments: (Bits) Value seq444 560 3e-155 seq31551 226 8e-55 seq31730 188 2e-43 seq31523 172 2e-38 seq203 129 2e-25 seq34854 125 2e-24 seq77 116 1e-21 seq85 96.9 1e-15 >seq444 Length=4271 Score = 560 bits (620), Expect = 3e-155 Identities = 710/974 (73%), Gaps = 2/974 (0%) Strand=Plus/Plus Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519 |||| || | || ||||| || ||||||||||| || || || |||||||| || || | Sbjct 121 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 180 Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579 |||||||| |||||||||| ||| |||||||| || || || || |||| | | | Sbjct 181 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 240 Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639 | | | |||||||| || ||||||||||| | |||||||||||| ||| | || | Sbjct 241 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 300 Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699 |||| ||||||||||||||| || ||||| || || | |||||||| | | ||| | Sbjct 301 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 360 Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759 |||| || || |||||||||||||| || | || |||||||| ||||||||||| |||| Sbjct 361 AATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 420 Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819 | |||||||| ||||| ||||| || || ||||||| | || || | | ||| | Sbjct 421 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 480 Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879 | || || | || | || || |||| | ||| ||||||||| || | | Sbjct 481 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGC 540 Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939 | || ||||| || || ||||| | ||||||||| || ||||||||||| |||||||||| Sbjct 541 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 600 Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999 ||||||| || | ||| ||||||| || || || || || | |||||| ||||||||| Sbjct 601 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 660 Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059 || ||||| |||| ||||| | | ||| |||||||||||||| || |||||||| | Sbjct 661 AACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTG 720 Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119 | || |||||| ||||| || | ||| || || || | |||||||||||||| || | Sbjct 721 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 780 Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179 |||| ||| | || |||| | ||||| | || | |||| | |||||||||| Sbjct 781 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 840 Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239 |||| ||||||||||||| | ||||||||||| |||||||| || || | ||| || | Sbjct 841 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAG 900 Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299 | | | |||| | ||| || || || || ||||| || || | || || |||| Sbjct 901 CTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 960 Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359 || ||||| || || ||||| || || || || || || ||| || |||||||||| Sbjct 961 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 1020 Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418 || || || |||| ||| ||| | || ||||| | || || |||||||| | ||| Sbjct 1021 AAACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 1079 Query 22419 AGACGGTTATTAGT 22432 |||||||| | ||| Sbjct 1080 AGACGGTTTTCAGT 1093 >seq31551 Length=1713 Score = 226 bits (250), Expect = 8e-55 Identities = 249/332 (75%), Gaps = 6/332 (2%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || || |||||||| || || | |||||||| Sbjct 728 GCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 787 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTG------TCCATCAGCAGCTAGC 21584 |||||||||| | ||||||||||| || || || || ||| | | | | | Sbjct 788 GCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGACTATCAACT 847 Query 21585 AGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCA 21644 | ||||||||| || |||||||| || |||| ||||||||||| | || | ||| Sbjct 848 ACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATACCTAAAGCA 907 Query 21645 GCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTA 21704 | ||||| |||||||| |||||||| ||||| || |||||||| | ||| ||||| Sbjct 908 GTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGAATTG 967 Query 21705 TTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTG 21764 || | ||||||||||||||||| | || |||||||| || |||||||| || ||||| Sbjct 968 TTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 1027 Query 21765 TAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796 ||||| ||||| |||||||| || ||||||| Sbjct 1028 TAAGTTTCTTCTTCTTGACCGAATCTGTAACC 1059 >seq31730 Length=297 Score = 188 bits (208), Expect = 2e-43 Identities = 212/284 (75%), Gaps = 0/284 (0%) Strand=Plus/Minus Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACA 21899 || || |||| | ||| ||||||||| ||| | || || ||||| || || || Sbjct 284 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACG 225 Query 21900 CCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAG 21959 || | ||||||||| || |||||||| || ||||||||||||||||| || | |||| || Sbjct 224 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAG 165 Query 21960 TTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGA 22019 ||||| || || || || || | |||||| ||||||||||| || || |||| || Sbjct 164 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGG 105 Query 22020 TAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAG 22079 || | | ||| |||||||| ||||| || |||||||| || || |||||| ||||| Sbjct 104 TAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 45 Query 22080 GGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCAT 22123 || | ||| || || || | |||||||||||||| || ||||| Sbjct 44 GGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1 >seq31523 Length=225 Score = 172 bits (190), Expect = 2e-38 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656 || ||||||||||| | |||||||||||| || | || | |||| ||||| ||| Sbjct 224 AAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATA 165 Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716 ||||| |||||||| ||||| || ||||| || | | ||| ||||| || || |||||| Sbjct 164 CCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCA 105 Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776 ||||||||||| | || |||||||| || |||||||| || ||||| ||||| |||||| Sbjct 104 TATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCC 45 Query 21777 TCTTGACCAAACTTGTAACC 21796 |||||||| || ||||||| Sbjct 44 TCTTGACCGAATCTGTAACC 25 >seq203 Length=8626763 Score = 129 bits (142), Expect = 2e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 21909 TGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTG 21968 || || |||| |||||| || ||||||||||| ||||| || | |||| | ||||| | Sbjct 3756301 TGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGCA 3756360 Query 21969 CCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGG 22028 | ||| || || | |||||| ||||| |||| || || |||| || || | | | Sbjct 3756361 CTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAAG 3756420 Query 22029 AACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATC 22088 || |||||||| |||| || || ||||| || || ||||||| ||||| || | ||| Sbjct 3756421 AAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCATA 3756480 Query 22089 CCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127 ||||| || | ||||||||| |||| ||||||||| Sbjct 3756481 CCTAGACGGAAACTAAGTTCCTACTCATAACCCATGTAA 3756519 >seq34854 Length=328 Score = 125 bits (138), Expect = 2e-24 Identities = 184/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Minus Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229 |||||||||||||| | ||||||||||| | || |||||||| |||||||| || || Sbjct 315 GGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATATTGGGTAAAAATGC 256 Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289 | || || || | | |||| | ||| || || || || ||||| ||||| | Sbjct 255 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATTGTTTCCATAAAGT 196 Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349 || || |||| || ||||| || || ||||| || || || || || || ||| ||| Sbjct 195 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAG 136 Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408 || |||||||| || || |||| ||| ||| | ||| |||| | || || ||||| Sbjct 135 GCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGA-TCATCAAAACACCAAACCA 77 Query 22409 TCCTACATAAAGACGGTT 22426 ||| | ||||||||||| Sbjct 76 TCCAATGTAAAGACGGTT 59 >seq77 Length=8408033 Score = 116 bits (128), Expect = 1e-21 Identities = 207/302 (69%), Gaps = 0/302 (0%) Strand=Plus/Minus Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCA 22043 |||||| |||| ||||| || |||| || || | | ||| ||| | | ||| Sbjct 2699059 GGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAACAATAATAGCA 2699000 Query 22044 GCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTA 22103 || |||||||| || || |||||| ||||| | | ||| ||||| ||| | ||| Sbjct 2698999 ATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAAACTA 2698940 Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163 ||||||||||| || ||||||||| | || |||| | |||||| | ||| | || Sbjct 2698939 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAATTAGC 2698880 Query 22164 TGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAG 22223 | | |||||||||||||| | ||||||||||| || | |||||| | |||||||| Sbjct 2698879 TCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTACATTGGGTAA 2698820 Query 22224 AAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283 | || | || || || | | |||| | ||| || || || || ||||| ||| Sbjct 2698819 ATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTGTTTCCA 2698760 Query 22284 TA 22285 || Sbjct 2698759 TA 2698758 >seq85 Length=5226098 Score = 96.9 bits (106), Expect = 1e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530 || ||||| || |||||||| || || || | |||||||| || || | |||||||| Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246 Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590 |||| |||| ||| ||| |||| || || || || | || | | | | | | ||| Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306 Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGT 21628 ||||| || ||||||||||| | |||||||||||| || Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 1123344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146144843261280