Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_020838.1
Length=45728
Score E
Sequences producing significant alignments: (Bits) Value
seq444 560 3e-155
seq31551 226 8e-55
seq31730 188 2e-43
seq31523 172 2e-38
seq203 129 2e-25
seq34854 125 2e-24
seq77 116 1e-21
seq85 96.9 1e-15
>seq444
Length=4271
Score = 560 bits (620), Expect = 3e-155
Identities = 710/974 (73%), Gaps = 2/974 (0%)
Strand=Plus/Plus
Query 21460 CCTCCACGGATGCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAA 21519
|||| || | || ||||| || ||||||||||| || || || |||||||| || || |
Sbjct 121 CCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCA 180
Query 21520 AGCCAAGGTTGGCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAG 21579
|||||||| |||||||||| ||| |||||||| || || || || |||| | | |
Sbjct 181 TACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTAT 240
Query 21580 CTAGCAGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAA 21639
| | | |||||||| || ||||||||||| | |||||||||||| ||| | || |
Sbjct 241 CAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTA 300
Query 21640 GCGCAGCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGG 21699
|||| ||||||||||||||| || ||||| || || | |||||||| | | ||| |
Sbjct 301 AAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAG 360
Query 21700 AATTATTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAA 21759
|||| || || |||||||||||||| || | || |||||||| ||||||||||| ||||
Sbjct 361 AATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAA 420
Query 21760 TATTGTAAGTCTCTTCCTCTTGACCAAACTTGTAACCATAGTTCTGTGAAACCTCTTCAG 21819
| |||||||| ||||| ||||| || || ||||||| | || || | | ||| |
Sbjct 421 TGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTG 480
Query 21820 TCGTCTCACGAATGAGTGACGACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCC 21879
| || || | || | || || |||| | ||| ||||||||| || | |
Sbjct 481 TGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGC 540
Query 21880 CACCAAATACGCCGGCCACACCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAG 21939
| || ||||| || || ||||| | ||||||||| || ||||||||||| ||||||||||
Sbjct 541 CGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAG 600
Query 21940 CCTGGAACACCAGCATGTAGTTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAA 21999
||||||| || | ||| ||||||| || || || || || | |||||| |||||||||
Sbjct 601 CCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAA 660
Query 22000 AAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAG 22059
|| ||||| |||| ||||| | | ||| |||||||||||||| || |||||||| |
Sbjct 661 AACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTG 720
Query 22060 AGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTC 22119
| || |||||| ||||| || | ||| || || || | |||||||||||||| || |
Sbjct 721 AATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGAC 780
Query 22120 CCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGTTGGAATGGACCGCCGT 22179
|||| ||| | || |||| | ||||| | || | |||| | ||||||||||
Sbjct 781 CCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGT 840
Query 22180 TGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGTAGTCCGATGG 22239
|||| ||||||||||||| | ||||||||||| |||||||| || || | ||| || |
Sbjct 841 TGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAG 900
Query 22240 CATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAACAGGGAGCCAG 22299
| | | |||| | ||| || || || || ||||| || || | || || ||||
Sbjct 901 CTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAG 960
Query 22300 CGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAGGCGATAATAA 22359
|| ||||| || || ||||| || || || || || || ||| || ||||||||||
Sbjct 961 AAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAA 1020
Query 22360 AACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCATCCTACATAA 22418
|| || || |||| ||| ||| | || ||||| | || || |||||||| | |||
Sbjct 1021 AAACAGAAGTTGCGGTCAATAAGGTA-GGGATCATCAAAACACCAAACCATCCAATGTAA 1079
Query 22419 AGACGGTTATTAGT 22432
|||||||| | |||
Sbjct 1080 AGACGGTTTTCAGT 1093
>seq31551
Length=1713
Score = 226 bits (250), Expect = 8e-55
Identities = 249/332 (75%), Gaps = 6/332 (2%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || || |||||||| || || | ||||||||
Sbjct 728 GCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 787
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTG------TCCATCAGCAGCTAGC 21584
|||||||||| | ||||||||||| || || || || ||| | | | | |
Sbjct 788 GCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGACTATCAACT 847
Query 21585 AGAGATTGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCA 21644
| ||||||||| || |||||||| || |||| ||||||||||| | || | |||
Sbjct 848 ACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATACCTAAAGCA 907
Query 21645 GCAAACCAAATACCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTA 21704
| ||||| |||||||| |||||||| ||||| || |||||||| | ||| |||||
Sbjct 908 GTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGAATTG 967
Query 21705 TTAAAGCTAGCATATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTG 21764
|| | ||||||||||||||||| | || |||||||| || |||||||| || |||||
Sbjct 968 TTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 1027
Query 21765 TAAGTCTCTTCCTCTTGACCAAACTTGTAACC 21796
||||| ||||| |||||||| || |||||||
Sbjct 1028 TAAGTTTCTTCTTCTTGACCGAATCTGTAACC 1059
>seq31730
Length=297
Score = 188 bits (208), Expect = 2e-43
Identities = 212/284 (75%), Gaps = 0/284 (0%)
Strand=Plus/Minus
Query 21840 GACGTGACCAGGCTACCGTGCATAGCAGAGAACAAACTCCCACCAAATACGCCGGCCACA 21899
|| || |||| | ||| ||||||||| ||| | || || ||||| || || ||
Sbjct 284 GAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACG 225
Query 21900 CCCAGCATGTGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAG 21959
|| | ||||||||| || |||||||| || ||||||||||||||||| || | |||| ||
Sbjct 224 CCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAG 165
Query 21960 TTGAAGGTGCCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGA 22019
||||| || || || || || | |||||| ||||||||||| || || |||| ||
Sbjct 164 TTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGG 105
Query 22020 TAAACAAGGAACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAG 22079
|| | | ||| |||||||| ||||| || |||||||| || || |||||| |||||
Sbjct 104 TAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAA 45
Query 22080 GGCCTCATCCCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCAT 22123
|| | ||| || || || | |||||||||||||| || |||||
Sbjct 44 GGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1
>seq31523
Length=225
Score = 172 bits (190), Expect = 2e-38
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Minus
Query 21597 AAGTTGAAACCATTCAAGTTGAAAGCCATGGTAGACACGCCAAGCGCAGCAAACCAAATA 21656
|| ||||||||||| | |||||||||||| || | || | |||| ||||| |||
Sbjct 224 AAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATA 165
Query 21657 CCTACAACAGGCCAGGCAGCAAGAAAGAAATGAAGACTACGGGAATTATTAAAGCTAGCA 21716
||||| |||||||| ||||| || ||||| || | | ||| ||||| || || ||||||
Sbjct 164 CCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCA 105
Query 21717 TATTGGAAGATAAGCCGACCAAAATAGCCGTGAGCAGCAACAATATTGTAAGTCTCTTCC 21776
||||||||||| | || |||||||| || |||||||| || ||||| ||||| ||||||
Sbjct 104 TATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCC 45
Query 21777 TCTTGACCAAACTTGTAACC 21796
|||||||| || |||||||
Sbjct 44 TCTTGACCGAATCTGTAACC 25
>seq203
Length=8626763
Score = 129 bits (142), Expect = 2e-25
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Plus
Query 21909 TGAAAAGGATGCATAAGAATATTGTGCTCAGCCTGGAACACCAGCATGTAGTTGAAGGTG 21968
|| || |||| |||||| || ||||||||||| ||||| || | |||| | ||||| |
Sbjct 3756301 TGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGCA 3756360
Query 21969 CCGGATATCCCCAAGGGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGG 22028
| ||| || || | |||||| ||||| |||| || || |||| || || | | |
Sbjct 3756361 CTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAAG 3756420
Query 22029 AACACAGCAGTCGCAGCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATC 22088
|| |||||||| |||| || || ||||| || || ||||||| ||||| || | |||
Sbjct 3756421 AAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCATA 3756480
Query 22089 CCTAGTCGATAGCTAAGTTCCCACTCTCGTCCCATGTAA 22127
||||| || | ||||||||| |||| |||||||||
Sbjct 3756481 CCTAGACGGAAACTAAGTTCCTACTCATAACCCATGTAA 3756519
>seq34854
Length=328
Score = 125 bits (138), Expect = 2e-24
Identities = 184/258 (71%), Gaps = 2/258 (1%)
Strand=Plus/Minus
Query 22170 GGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAGAAGTGT 22229
|||||||||||||| | ||||||||||| | || |||||||| |||||||| || ||
Sbjct 315 GGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATATTGGGTAAAAATGC 256
Query 22230 AGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCATACAAC 22289
| || || || | | |||| | ||| || || || || ||||| ||||| |
Sbjct 255 AAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATTGTTTCCATAAAGT 196
Query 22290 AGGGAGCCAGCGACGGGTTCTCGGATTCCATCGATGTCAACAGGTGGTGCGCCAACAAAG 22349
|| || |||| || ||||| || || ||||| || || || || || || ||| |||
Sbjct 195 AGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAAG 136
Query 22350 GCGATAATAAAACAAGTTGTAGCGG-CAAGGAGGCACGGAATCATAAGGACTCCGAACCA 22408
|| |||||||| || || |||| ||| ||| | ||| |||| | || || |||||
Sbjct 135 GCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGA-TCATCAAAACACCAAACCA 77
Query 22409 TCCTACATAAAGACGGTT 22426
||| | |||||||||||
Sbjct 76 TCCAATGTAAAGACGGTT 59
>seq77
Length=8408033
Score = 116 bits (128), Expect = 1e-21
Identities = 207/302 (69%), Gaps = 0/302 (0%)
Strand=Plus/Minus
Query 21984 GGCATAGCATCAGAAAAAGAGCCCTGTCCAAACGGATAAACAAGGAACACAGCAGTCGCA 22043
|||||| |||| ||||| || |||| || || | | ||| ||| | | |||
Sbjct 2699059 GGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAACAATAATAGCA 2699000
Query 22044 GCGGCGACAGGAGCAGAGTACGCAACAAAGATCCAGGGCCTCATCCCTAGTCGATAGCTA 22103
|| |||||||| || || |||||| ||||| | | ||| ||||| ||| | |||
Sbjct 2698999 ATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAAACTA 2698940
Query 22104 AGTTCCCACTCTCGTCCCATGTAAGCAAAGACGCCAATGAGGAAGTGGAATACGGTGAGT 22163
||||||||||| || ||||||||| | || |||| | |||||| | ||| | ||
Sbjct 2698939 AGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAATTAGC 2698880
Query 22164 TGGAATGGACCGCCGTTGTACAGCCATTCATCAAGTGTAGCAGCTTCCCAAATTGGGTAG 22223
| | |||||||||||||| | ||||||||||| || | |||||| | ||||||||
Sbjct 2698879 TCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTACATTGGGTAA 2698820
Query 22224 AAGTGTAGTCCGATGGCATTACTGCTCGGAACGACGGCTCCTGATATGATGTTGTTACCA 22283
| || | || || || | | |||| | ||| || || || || ||||| |||
Sbjct 2698819 ATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTGTTTCCA 2698760
Query 22284 TA 22285
||
Sbjct 2698759 TA 2698758
>seq85
Length=5226098
Score = 96.9 bits (106), Expect = 1e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Plus
Query 21471 GCAAGGTCAAGCGGGAAGTTGTGTGCGTTCCGCTCATGCATCACCTCAAAGCCAAGGTTG 21530
|| ||||| || |||||||| || || || | |||||||| || || | ||||||||
Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246
Query 21531 GCACGGTTAAGAATGTCAGCCCAGGTGTTGATCACCTGTCCATCAGCAGCTAGCAGAGAT 21590
|||| |||| ||| ||| |||| || || || || | || | | | | | | |||
Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306
Query 21591 TGGTTAAAGTTGAAACCATTCAAGTTGAAAGCCATGGT 21628
||||| || ||||||||||| | |||||||||||| ||
Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 1123344
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146144843261280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |