Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq161 118 1e-21 seq49 118 1e-21 seq24 93.3 5e-14 >seq161 Length=5110746 Score = 118 bits (130), Expect = 1e-21 Identities = 116/150 (77%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127 ||||||||||||||||| | || || || || || ||||| |||||||||||||| Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294 Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187 |||||||| || | ||| | |||||||| || |||||||| || || |||||| || Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354 Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217 || || || ||||| || ||||| |||||| Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCAC 1384384 >seq49 Length=4798478 Score = 118 bits (130), Expect = 1e-21 Identities = 194/277 (70%), Gaps = 2/277 (1%) Strand=Plus/Minus Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374 || || || || |||||||| | || | || | || ||||| | ||| |||||| Sbjct 1564129 CCCGGGACCGGGAAGACCCTTTTGGCAAGGGCGGTGGCTGGTGAGGCTGGTGTGCCATTC 1564070 Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434 || ||| | || | | ||||||||| ||||||| || || ||||| ||| ||| Sbjct 1564069 TTCTCGTGTGCGGCATCCGAGTTTGTGGAGTTGTTTGTGGGCGTCGGTGCTTCAAGAGTT 1564010 Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493 | || | ||||| | || | |||| || || || ||||| || ||||||||||| Sbjct 1564009 AGGGACTTGTTTGAGAAGGCGAAGTCAAAAGCA-CCTTGCATTGTGTTTATTGATGAGAT 1563951 Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553 |||||||||||| | ||| | | |||||| | || ||||| |||||||| || Sbjct 1563950 TGATGCGGTGGGGAGGCAGAGAGGAGCTGGTCTTGGAGGAGGGAATGATGAGAGAGAGCA 1563891 Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590 ||| || ||||| ||| | || ||||||||||| ||| Sbjct 1563890 AACTATCAATCAGCTATTGACTGAGATGGATGGTTTT 1563854 >seq24 Length=10012559 Score = 93.3 bits (102), Expect = 5e-14 Identities = 251/372 (67%), Gaps = 24/372 (6%) Strand=Plus/Plus Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTT-GGAAGTGGT-GCCAAGATCC 175288 ||||||||||| || || ||| | ||| |||| ||| || |||| || | ||||| Sbjct 7389466 GAGATTGTGGAGTT-CTTAAGGACGCCG-GAGAAGTTTGCGGCCGTGGGAGCGAGGATCC 7389523 Query 175289 CCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCA 175348 || ||| | ||||| | ||| || || || || |||||| | | ||| || | Sbjct 7389524 CCAAAGGAGTTCTTCTAGTGGGGCCACCGGGGACAGGGAAGACCTTGTTGGCCAAGGCGA 7389583 Query 175349 TCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTG-CCG---CAAACTTTGTGGAG 175404 | || || ||| | ||||| ||| | | | ||| ||| || | || | ||| Sbjct 7389584 TTGCAGGAGAAGCTGGGGTCCCTTTCTT----TTCGCTGTCCGGGTCAGAGTTCATTGAG 7389639 Query 175405 ATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA--- 175461 ||||||||||| || || || ||||| || || || ||| || | ||||| Sbjct 7389640 ATGTTTGTTGGCGTAGGCGCTTCGAGGGTGCGTGACCT-TTTCAACAAG---GCGAAGGC 7389695 Query 175462 -AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGC 175520 ||| || || | ||||||||||||||||||||||| || || | ||| | | | Sbjct 7389696 GAATTCGCCTTGCTTGGTCTTCATTGATGAGATTGATGCTGTTGGGAGGCAGAGAGGGAC 7389755 Query 175521 TGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAG 175578 ||| | | | | || |||||| |||||||| |||||| | ||||| | ||||| ||| Sbjct 7389756 TGGCATTGGAGG--AGGAAATGATGAGAGAGAGCAAACATTGAATCAGTTGCTCACTGAG 7389813 Query 175579 ATGGATGGCTTT 175590 |||||||| ||| Sbjct 7389814 ATGGATGGTTTT 7389825 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596298339802880