Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_020852.1
Length=186468
Score E
Sequences producing significant alignments: (Bits) Value
seq161 118 1e-21
seq49 118 1e-21
seq24 93.3 5e-14
>seq161
Length=5110746
Score = 118 bits (130), Expect = 1e-21
Identities = 116/150 (77%), Gaps = 0/150 (0%)
Strand=Plus/Plus
Query 65068 TCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCA 65127
||||||||||||||||| | || || || || || ||||| ||||||||||||||
Sbjct 1384235 TCCTTCGCCGAGCGCCTCCTCGCCTTCGCCTGCGTCGAGGGCATCTTCTTCTCCGGCAGT 1384294
Query 65128 TTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAAT 65187
|||||||| || | ||| | |||||||| || |||||||| || || |||||| ||
Sbjct 1384295 TTCTGCGCCATCTTCTGGCTCAAGAAGCGCGGCCTCATGCCGGGGCTCACCTTCTCGAAC 1384354
Query 65188 GAACTTATTTCCCGAGATGAGGGTCTCCAC 65217
|| || || ||||| || ||||| ||||||
Sbjct 1384355 GAGCTCATCTCCCGGGACGAGGGCCTCCAC 1384384
>seq49
Length=4798478
Score = 118 bits (130), Expect = 1e-21
Identities = 194/277 (70%), Gaps = 2/277 (1%)
Strand=Plus/Minus
Query 175315 CCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCATCGCGGGTGAATCAAATGTCCCATTC 175374
|| || || || |||||||| | || | || | || ||||| | ||| ||||||
Sbjct 1564129 CCCGGGACCGGGAAGACCCTTTTGGCAAGGGCGGTGGCTGGTGAGGCTGGTGTGCCATTC 1564070
Query 175375 ATCCAGTGCTCTGCCGCAAACTTTGTGGAGATGTTTGTTGGTGTGGGTGCCAAAAGGGTT 175434
|| ||| | || | | ||||||||| ||||||| || || ||||| ||| |||
Sbjct 1564069 TTCTCGTGTGCGGCATCCGAGTTTGTGGAGTTGTTTGTGGGCGTCGGTGCTTCAAGAGTT 1564010
Query 175435 CGCGATCTCTTTGAAATCGCCC-GCGAAAATCAACCATGTATTGTCTTCATTGATGAGAT 175493
| || | ||||| | || | |||| || || || ||||| || |||||||||||
Sbjct 1564009 AGGGACTTGTTTGAGAAGGCGAAGTCAAAAGCA-CCTTGCATTGTGTTTATTGATGAGAT 1563951
Query 175494 TGATGCGGTGGGCAAGCAACGCAGCGCTGGTGGTATGCCAGCAAATGACGAGAGAGAACA 175553
|||||||||||| | ||| | | |||||| | || ||||| |||||||| ||
Sbjct 1563950 TGATGCGGTGGGGAGGCAGAGAGGAGCTGGTCTTGGAGGAGGGAATGATGAGAGAGAGCA 1563891
Query 175554 AACAATTAATCAACTACTCACCGAGATGGATGGCTTT 175590
||| || ||||| ||| | || ||||||||||| |||
Sbjct 1563890 AACTATCAATCAGCTATTGACTGAGATGGATGGTTTT 1563854
>seq24
Length=10012559
Score = 93.3 bits (102), Expect = 5e-14
Identities = 251/372 (67%), Gaps = 24/372 (6%)
Strand=Plus/Plus
Query 175231 GAGATTGTGGATTTTCTCAAGCAACCCGAGAGATATTTT-GGAAGTGGT-GCCAAGATCC 175288
||||||||||| || || ||| | ||| |||| ||| || |||| || | |||||
Sbjct 7389466 GAGATTGTGGAGTT-CTTAAGGACGCCG-GAGAAGTTTGCGGCCGTGGGAGCGAGGATCC 7389523
Query 175289 CCCGAGGCGCCCTTCTCGCGGGTAAGCCAGGTACGGGAAAGACCCTCCTCGCCCGAGCCA 175348
|| ||| | ||||| | ||| || || || || |||||| | | ||| || |
Sbjct 7389524 CCAAAGGAGTTCTTCTAGTGGGGCCACCGGGGACAGGGAAGACCTTGTTGGCCAAGGCGA 7389583
Query 175349 TCGCGGGTGAATCAAATGTCCCATTCATCCAGTGCTCTG-CCG---CAAACTTTGTGGAG 175404
| || || ||| | ||||| ||| | | | ||| ||| || | || | |||
Sbjct 7389584 TTGCAGGAGAAGCTGGGGTCCCTTTCTT----TTCGCTGTCCGGGTCAGAGTTCATTGAG 7389639
Query 175405 ATGTTTGTTGGTGTGGGTGCCAAAAGGGTTCGCGATCTCTTTGAAATCGCCCGCGAA--- 175461
||||||||||| || || || ||||| || || || ||| || | |||||
Sbjct 7389640 ATGTTTGTTGGCGTAGGCGCTTCGAGGGTGCGTGACCT-TTTCAACAAG---GCGAAGGC 7389695
Query 175462 -AATCAACCATGTATTGTCTTCATTGATGAGATTGATGCGGTGGGCAAGCAACGCAGCGC 175520
||| || || | ||||||||||||||||||||||| || || | ||| | | |
Sbjct 7389696 GAATTCGCCTTGCTTGGTCTTCATTGATGAGATTGATGCTGTTGGGAGGCAGAGAGGGAC 7389755
Query 175521 TGG--TGGTATGCCAGCAAATGACGAGAGAGAACAAACAATTAATCAACTACTCACCGAG 175578
||| | | | | || |||||| |||||||| |||||| | ||||| | ||||| |||
Sbjct 7389756 TGGCATTGGAGG--AGGAAATGATGAGAGAGAGCAAACATTGAATCAGTTGCTCACTGAG 7389813
Query 175579 ATGGATGGCTTT 175590
|||||||| |||
Sbjct 7389814 ATGGATGGTTTT 7389825
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 596298339802880
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |