Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020855.1 Length=192497 Score E Sequences producing significant alignments: (Bits) Value seq444 515 5e-141 seq31551 241 2e-58 seq31730 192 7e-44 seq34854 149 8e-31 seq31523 125 9e-24 seq77 122 1e-22 seq203 118 1e-21 seq85 111 2e-19 >seq444 Length=4271 Score = 515 bits (570), Expect = 5e-141 Identities = 711/990 (72%), Gaps = 6/990 (1%) Strand=Plus/Plus Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937 || |||| ||| |||| ||||| ||||||||||| ||||| | ||||||||||||||| Sbjct 119 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 178 Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995 |||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | | Sbjct 179 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 236 Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055 |||||| ||||||||||| || || || || || ||||| || ||||| || | |||| Sbjct 237 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 296 Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115 || | || ||| ||||||| || ||| || || | | || | |||||| || | | Sbjct 297 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 356 Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174 | | ||||| |||| | ||||| ||||| || |||| ||||| || || |||||||| Sbjct 357 CGAGAATTGTTGAAACTA-GCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 415 Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234 ||||| || || || ||||||||||| || || | ||||| | || ||| || | Sbjct 416 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 475 Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294 ||| || || || ||||| | | ||| || || || ||||| ||||||||||| || || Sbjct 476 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 535 Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354 || || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| || Sbjct 536 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 595 Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414 ||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| ||||| Sbjct 596 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 655 Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474 ||| || |||||||||| |||||| | ||||| || || ||||| | || || Sbjct 656 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 715 Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534 ||| |||||| ||| ||||| || | |||||| | ||| | | ||||||| Sbjct 716 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 775 Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594 | |||||| ||| || | |||| | ||||| | | || | | ||| ||||| Sbjct 776 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 835 Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654 ||||| || | ||| ||||| | | ||||||||||| || || || || || ||||| Sbjct 836 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCC 895 Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714 |||||| |||| |||| | ||||| || || || |||||||| || | | || Sbjct 896 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 955 Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774 || | |||||||||||||||||| || ||||| || || ||||||||||| ||||| | Sbjct 956 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1015 Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834 ||||| || || || | || ||| ||| ||||| | ||| |||||||| || | Sbjct 1016 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1075 Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 ||||| | ||| | || || || | ||| Sbjct 1076 GTAAAGACGGTTTTCAGTGCTAGTTATCCA 1105 >seq31551 Length=1713 Score = 241 bits (266), Expect = 2e-58 Identities = 322/442 (73%), Gaps = 13/442 (3%) Strand=Plus/Plus Query 7874 CGGAAGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAA 7933 ||||| | ||| ||| |||| ||||| |||||||| || ||||| | ||||||||||| Sbjct 712 CGGAACT-TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAA 770 Query 7934 CTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCAT 7993 |||||||||| | ||| || | ||| | | ||| |||| ||| ||| | | ||| | Sbjct 771 CTTCCATACCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTT 830 Query 7994 TAAC------ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTG 8047 | | |||||| || |||||||| || || || ||||| | || ||| ||||| | Sbjct 831 TTCCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGG 890 Query 8048 TGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGT 8107 ||| |||||| | || ||| ||||| | || ||| || || | | ||| |||||||| | Sbjct 891 TGCTAATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAAT 950 Query 8108 G-AAG--ACTTCTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATC 8164 | ||| || | ||||| | || | ||||| |||||||| |||| ||||| || | Sbjct 951 GTAAGGAACGAGAATTGTTG--ACACTA-GCATATTGGAAGATCAATCGGCCAAAATAAC 1007 Query 8165 CATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCT 8224 |||||||||| || |||||||| || |||||||||||||| || | ||||| || Sbjct 1008 CATGAGCAGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTACATTAG 1067 Query 8225 GAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAG 8284 ||| || | ||| || || || ||||| | | ||| || || || ||||| ||||||| Sbjct 1068 CAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAG 1127 Query 8285 CACTGAAGAGTGATCCACCGAA 8306 ||||||| || || || ||||| Sbjct 1128 CACTGAATAGAGAGCCGCCGAA 1149 >seq31730 Length=297 Score = 192 bits (212), Expect = 7e-44 Identities = 220/296 (74%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307 ||||| | | ||| || || || ||||| |||||||||||||| || || || ||||| Sbjct 296 CTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 237 Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367 | ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || |||||| Sbjct 236 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 177 Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427 || | ||||||||| || ||||||||||| ||||||||||| |||||||| || || Sbjct 176 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCT 117 Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487 ||||||| ||| || | ||||| || || |||||| | || ||||| |||||| Sbjct 116 TGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 57 Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCAT 8543 ||| ||||| || | |||||| | ||| | | ||||||| | |||||| Sbjct 56 ACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1 >seq34854 Length=328 Score = 149 bits (164), Expect = 8e-31 Identities = 202/282 (72%), Gaps = 0/282 (0%) Strand=Plus/Minus Query 8583 CTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATA 8642 || ||| ||||| ||||| || ||||| ||||| | | || |||||||| || || || Sbjct 322 CTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATATTGGGTA 263 Query 8643 GAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCC 8702 || || || || ||||| |||| |||| | ||||| ||||| || |||||||| Sbjct 262 AAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATTGTTTCC 203 Query 8703 ATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGC 8762 ||| | | || || | |||||||||||||||||| || ||||| || || |||||||| Sbjct 202 ATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGC 143 Query 8763 AATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCC 8822 ||| || || | ||||| || || || | || ||| ||| ||||| | ||| || Sbjct 142 AATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACC 83 Query 8823 AAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864 |||||| || | ||||| | ||| | || || || | ||| Sbjct 82 AAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCA 41 >seq31523 Length=225 Score = 125 bits (138), Expect = 9e-24 Identities = 150/201 (75%), Gaps = 2/201 (1%) Strand=Plus/Minus Query 8017 AAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACA 8076 || || || || || ||||| || ||||| |||| ||||| | || ||| ||||| | | Sbjct 224 AAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATA 165 Query 8077 CATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGC 8135 | ||| || || | | ||| ||||||||||| | | | | ||||| |||| | || Sbjct 164 CCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTA-GC 106 Query 8136 ATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTC 8195 ||| |||||||| |||| ||||| || ||||||||||| || |||||||| || ||||| Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46 Query 8196 TTCTTGACCAAACTTATAACC 8216 |||||||| || | ||||| Sbjct 45 CTCTTGACCGAATCTGTAACC 25 >seq77 Length=8408033 Score = 122 bits (134), Expect = 1e-22 Identities = 256/382 (67%), Gaps = 0/382 (0%) Strand=Plus/Minus Query 8387 TACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTA 8446 || || |||| |||||||||| | |||| | || ||||||| ||| || | | Sbjct 2699076 TAACAAAAATTTCTAGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCA 2699017 Query 8447 AGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCA 8506 |||| || | |||| | || ||||| |||||| ||| ||||| | | || Sbjct 2699016 AGAAAACAATAATAGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACA 2698957 Query 8507 TACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGA 8566 |||||| || | | ||||||| | |||||||||| || | |||| | || Sbjct 2698956 TACCTAGACGAAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 2698897 Query 8567 AGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAG 8626 |||| | | || | || ||| ||||| ||||| || ||||| ||||| | || | | Sbjct 2698896 AGTGTAGTACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATG 2698837 Query 8627 CTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAG 8686 ||||| | || || || | || || || ||||| |||| ||||| | ||||| | Sbjct 2698836 CTTCCTACATTGGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGG 2698777 Query 8687 AGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATAT 8746 |||| || ||||||||||| | | || | | || ||||| |||||||| || |||| Sbjct 2698776 AGATAATATTGTTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATAT 2698717 Query 8747 CGACAGGTGGAGCAGCAATAAA 8768 | | || |||||||| || || Sbjct 2698716 CTATTGGAGGAGCAGCCATGAA 2698695 >seq203 Length=8626763 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 8328 ATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGT 8387 ||| || |||| |||||| ||||| ||||| ||||||||||| | |||||| || || | Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359 Query 8388 ACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAA 8447 || ||||| ||||||||||| ||||| | ||| || ||||||| ||| || | || Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419 Query 8448 GAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCAT 8507 ||| || || ||||| | || ||||| |||||| ||| ||||| || | ||| Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479 Query 8508 ACCTA 8512 ||||| Sbjct 3756480 ACCTA 3756484 >seq85 Length=5226098 Score = 111 bits (122), Expect = 2e-19 Identities = 127/169 (75%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950 |||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | ||| Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246 Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008 || | || ||||| ||| |||||||| ||| | ||| | | |||||| || | Sbjct 1123247 GCACAATTAATAATA--TCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGG 1123304 Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057 ||||||| || || || || || ||||| || ||||| |||| ||||| Sbjct 1123305 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 615582367366720