Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_020855.1
Length=192497
Score E
Sequences producing significant alignments: (Bits) Value
seq444 515 5e-141
seq31551 241 2e-58
seq31730 192 7e-44
seq34854 149 8e-31
seq31523 125 9e-24
seq77 122 1e-22
seq203 118 1e-21
seq85 111 2e-19
>seq444
Length=4271
Score = 515 bits (570), Expect = 5e-141
Identities = 711/990 (72%), Gaps = 6/990 (1%)
Strand=Plus/Plus
Query 7878 AGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTC 7937
|| |||| ||| |||| ||||| ||||||||||| ||||| | |||||||||||||||
Sbjct 119 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 178
Query 7938 CATACCTAAGTTTGCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTA 7995
|||||| | ||| || | ||| ||||| ||| |||| ||| ||| | || | |
Sbjct 179 CATACCAAGGTTAGCACGGTTAATAATA--TCAGCCCAAGTATTAATAACACGTCCTTGA 236
Query 7996 ACATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATA 8055
|||||| ||||||||||| || || || || || ||||| || ||||| || | ||||
Sbjct 237 CTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATA 296
Query 8056 CCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTT 8115
|| | || ||| ||||||| || ||| || || | | || | |||||| || | |
Sbjct 297 CCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAA 356
Query 8116 CTACTGTTGTT-AAACGATGCATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGC 8174
| | ||||| |||| | ||||| ||||| || |||| ||||| || || ||||||||
Sbjct 357 CGAGAATTGTTGAAACTA-GCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 415
Query 8175 AACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCTGAGACTCTTC 8234
||||| || || || ||||||||||| || || | ||||| | || ||| || |
Sbjct 416 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 475
Query 8235 TTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAG 8294
||| || || || ||||| | | ||| || || || ||||| ||||||||||| || ||
Sbjct 476 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 535
Query 8295 TGATCCACCGAACATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATG 8354
|| || ||||| | ||| ||||| ||| ||| || || || |||||||||||||| ||
Sbjct 536 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 595
Query 8355 CTCTGCTTGGAATACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATC 8414
||| || |||||||| | ||| ||||| || |||||||| || ||||||||||| |||||
Sbjct 596 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 655
Query 8415 AGAGAATGAACCCTGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGG 8474
||| || |||||||||| |||||| | ||||| || || ||||| | || ||
Sbjct 656 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 715
Query 8475 AGCACTATATGCTACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTG 8534
||| |||||| ||| ||||| || | |||||| | ||| | | |||||||
Sbjct 716 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 775
Query 8535 TCTACCCATGTAAGCAGAAATTCCAATAAGGAAGTGGAAGATAACCAACTGATATGGACC 8594
| |||||| ||| || | |||| | ||||| | | || | | ||| |||||
Sbjct 776 ACGACCCATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACC 835
Query 8595 TCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATAGAAGTGTAATCC 8654
||||| || | ||| ||||| | | ||||||||||| || || || || || |||||
Sbjct 836 GCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCC 895
Query 8655 AATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCCATACATGAATGA 8714
|||||| |||| |||| | ||||| || || || |||||||| || | | ||
Sbjct 896 AATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGA 955
Query 8715 ACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGCAATAAATGCCAC 8774
|| | |||||||||||||||||| || ||||| || || ||||||||||| ||||| |
Sbjct 956 TCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGAT 1015
Query 8775 GATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCCAAACCAACCGAC 8834
||||| || || || | || ||| ||| ||||| | ||| |||||||| || |
Sbjct 1016 AATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAAT 1075
Query 8835 ATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864
||||| | ||| | || || || | |||
Sbjct 1076 GTAAAGACGGTTTTCAGTGCTAGTTATCCA 1105
>seq31551
Length=1713
Score = 241 bits (266), Expect = 2e-58
Identities = 322/442 (73%), Gaps = 13/442 (3%)
Strand=Plus/Plus
Query 7874 CGGAAGTCTCAGCAGATGCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAA 7933
||||| | ||| ||| |||| ||||| |||||||| || ||||| | |||||||||||
Sbjct 712 CGGAACT-TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAA 770
Query 7934 CTTCCATACCTAAGTTTGCTCTGTTTAATACGTCACCCCATGTAGGAATGATTTTACCAT 7993
|||||||||| | ||| || | ||| | | ||| |||| ||| ||| | | ||| |
Sbjct 771 CTTCCATACCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTT 830
Query 7994 TAAC------ATCAACAACTGATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTG 8047
| | |||||| || |||||||| || || || ||||| | || ||| ||||| |
Sbjct 831 TTCCTTGACTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGG 890
Query 8048 TGCAAATACCCATAGAAGTTAACCAAACACATACAACTGGGAATGTAGCGAGGAAGAAGT 8107
||| |||||| | || ||| ||||| | || ||| || || | | ||| |||||||| |
Sbjct 891 TGCTAATACCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAAT 950
Query 8108 G-AAG--ACTTCTACTGTTGTTAAACGATGCATACTGGAAGATTAATCTACCAAAGTATC 8164
| ||| || | ||||| | || | ||||| |||||||| |||| ||||| || |
Sbjct 951 GTAAGGAACGAGAATTGTTG--ACACTA-GCATATTGGAAGATCAATCGGCCAAAATAAC 1007
Query 8165 CATGAGCAGCAACAATATTATAGGTCTCTTCTTCTTGACCAAACTTATAACCATAGTTCT 8224
|||||||||| || |||||||| || |||||||||||||| || | ||||| ||
Sbjct 1008 CATGAGCAGCTACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTACATTAG 1067
Query 8225 GAGACTCTTCTTCAGTTGTCTCTCTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAG 8284
||| || | ||| || || || ||||| | | ||| || || || ||||| |||||||
Sbjct 1068 CAGATTCATTTTCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAG 1127
Query 8285 CACTGAAGAGTGATCCACCGAA 8306
||||||| || || || |||||
Sbjct 1128 CACTGAATAGAGAGCCGCCGAA 1149
>seq31730
Length=297
Score = 192 bits (212), Expect = 7e-44
Identities = 220/296 (74%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 8248 CTGATTAGAGAAGATGTAACTAAAGAACCGTGCATAGCACTGAAGAGTGATCCACCGAAC 8307
||||| | | ||| || || || ||||| |||||||||||||| || || || |||||
Sbjct 296 CTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 237
Query 8308 ATACCTGCTACCCCTGCCATATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAAT 8367
| ||| ||||| ||| ||| || || || |||||||| ||||| ||||| || ||||||
Sbjct 236 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 177
Query 8368 ACGAACATGAAGTTAAACGTACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCC 8427
|| | ||||||||| || ||||||||||| ||||||||||| |||||||| || ||
Sbjct 176 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCT 117
Query 8428 TGACCAAATGGATATACTAAGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCT 8487
||||||| ||| || | ||||| || || |||||| | || ||||| ||||||
Sbjct 116 TGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 57
Query 8488 ACACAGATCCATGGTCTCATACCTAAGCGGTATGATAACTCCCACTGTCTACCCAT 8543
||| ||||| || | |||||| | ||| | | ||||||| | ||||||
Sbjct 56 ACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCAT 1
>seq34854
Length=328
Score = 149 bits (164), Expect = 8e-31
Identities = 202/282 (72%), Gaps = 0/282 (0%)
Strand=Plus/Minus
Query 8583 CTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAGCTTCCCAAATGGGATA 8642
|| ||| ||||| ||||| || ||||| ||||| | | || |||||||| || || ||
Sbjct 322 CTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCGCTTCCCATATTGGGTA 263
Query 8643 GAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAGAGATGATGTTGTTTCC 8702
|| || || || ||||| |||| |||| | ||||| ||||| || ||||||||
Sbjct 262 AAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATATTGTTTCC 203
Query 8703 ATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATATCGACAGGTGGAGCAGC 8762
||| | | || || | |||||||||||||||||| || ||||| || || ||||||||
Sbjct 202 ATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGC 143
Query 8763 AATAAATGCCACGATAAAGCAAGTAGCAGCAGCTAACAAGCAAGGAATCATTAGAACTCC 8822
||| || || | ||||| || || || | || ||| ||| ||||| | ||| ||
Sbjct 142 AATGAAGGCAATAATAAATACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACC 83
Query 8823 AAACCAACCGACATAAAGTCTGTTGTTTGTACTTGTAACCCA 8864
|||||| || | ||||| | ||| | || || || | |||
Sbjct 82 AAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCA 41
>seq31523
Length=225
Score = 125 bits (138), Expect = 9e-24
Identities = 150/201 (75%), Gaps = 2/201 (1%)
Strand=Plus/Minus
Query 8017 AAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACCCATAGAAGTTAACCAAACA 8076
|| || || || || ||||| || ||||| |||| ||||| | || ||| ||||| | |
Sbjct 224 AAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATA 165
Query 8077 CATACAACTGGGAATGTAGCGAGGAAGAAGTGAAGACTTCTACTGTTGTT-AAACGATGC 8135
| ||| || || | | ||| ||||||||||| | | | | ||||| |||| | ||
Sbjct 164 CCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTA-GC 106
Query 8136 ATACTGGAAGATTAATCTACCAAAGTATCCATGAGCAGCAACAATATTATAGGTCTCTTC 8195
||| |||||||| |||| ||||| || ||||||||||| || |||||||| || |||||
Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46
Query 8196 TTCTTGACCAAACTTATAACC 8216
|||||||| || | |||||
Sbjct 45 CTCTTGACCGAATCTGTAACC 25
>seq77
Length=8408033
Score = 122 bits (134), Expect = 1e-22
Identities = 256/382 (67%), Gaps = 0/382 (0%)
Strand=Plus/Minus
Query 8387 TACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTA 8446
|| || |||| |||||||||| | |||| | || ||||||| ||| || | |
Sbjct 2699076 TAACAAAAATTTCTAGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCA 2699017
Query 8447 AGAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCA 8506
|||| || | |||| | || ||||| |||||| ||| ||||| | | ||
Sbjct 2699016 AGAAAACAATAATAGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACA 2698957
Query 8507 TACCTAAGCGGTATGATAACTCCCACTGTCTACCCATGTAAGCAGAAATTCCAATAAGGA 8566
|||||| || | | ||||||| | |||||||||| || | |||| | ||
Sbjct 2698956 TACCTAGACGAAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGA 2698897
Query 8567 AGTGGAAGATAACCAACTGATATGGACCTCCGTTATACAACCACTCATCTAATGTGGCAG 8626
|||| | | || | || ||| ||||| ||||| || ||||| ||||| | || | |
Sbjct 2698896 AGTGTAGTACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATG 2698837
Query 8627 CTTCCCAAATGGGATAGAAGTGTAATCCAATAGCGTTGGAAGATGGAACGACAGCACCAG 8686
||||| | || || || | || || || ||||| |||| ||||| | ||||| |
Sbjct 2698836 CTTCCTACATTGGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGG 2698777
Query 8687 AGATGATGTTGTTTCCATACATGAATGAACCTGCAACAGGTTCACGAATACCGTCGATAT 8746
|||| || ||||||||||| | | || | | || ||||| |||||||| || ||||
Sbjct 2698776 AGATAATATTGTTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATAT 2698717
Query 8747 CGACAGGTGGAGCAGCAATAAA 8768
| | || |||||||| || ||
Sbjct 2698716 CTATTGGAGGAGCAGCCATGAA 2698695
>seq203
Length=8626763
Score = 118 bits (130), Expect = 1e-21
Identities = 137/185 (74%), Gaps = 0/185 (0%)
Strand=Plus/Plus
Query 8328 ATGGAAAGGATGCATAAGAATGTTATGCTCTGCTTGGAATACGAACATGAAGTTAAACGT 8387
||| || |||| |||||| ||||| ||||| ||||||||||| | |||||| || || |
Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359
Query 8388 ACCAGAAATACCTAGAGGCATTCCATCAGAGAATGAACCCTGACCAAATGGATATACTAA 8447
|| ||||| ||||||||||| ||||| | ||| || ||||||| ||| || | ||
Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419
Query 8448 GAACACTGCGAAAGCAGCAGATACTGGAGCACTATATGCTACACAGATCCATGGTCTCAT 8507
||| || || ||||| | || ||||| |||||| ||| ||||| || | |||
Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479
Query 8508 ACCTA 8512
|||||
Sbjct 3756480 ACCTA 3756484
>seq85
Length=5226098
Score = 111 bits (122), Expect = 2e-19
Identities = 127/169 (75%), Gaps = 4/169 (2%)
Strand=Plus/Plus
Query 7891 GCTAAGTCTAATGGGAAGTTGTGTGCATTTCTTTCATGCATAACTTCCATACCTAAGTTT 7950
|||| ||||| |||||||| || ||||| | ||||||||||||||||||||| | |||
Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246
Query 7951 GCTCTGTT--TAATACGTCACCCCATGTAGGAATGATTTTACCATTAACATCAACAACTG 8008
|| | || ||||| ||| |||||||| ||| | ||| | | |||||| || |
Sbjct 1123247 GCACAATTAATAATA--TCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGG 1123304
Query 8009 ATTGGTTAAAGTTAAATCCGTTAAGGTTAAATGCCATTGTGCAAATACC 8057
||||||| || || || || || ||||| || ||||| |||| |||||
Sbjct 1123305 ATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 615582367366720
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