Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_020865.1
Length=45730
Score E
Sequences producing significant alignments: (Bits) Value
seq444 560 3e-155
seq31551 226 8e-55
seq31730 188 2e-43
seq31523 172 2e-38
seq203 129 2e-25
seq34854 125 2e-24
seq77 116 1e-21
seq85 96.9 1e-15
>seq444
Length=4271
Score = 560 bits (620), Expect = 3e-155
Identities = 710/974 (73%), Gaps = 2/974 (0%)
Strand=Plus/Minus
Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313
||| | ||||||||||| | |||||||| || || | ||||| || | ||| ||| |
Sbjct 1093 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 1035
Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373
||| || || |||||||||||| || ||| || || || || || || ||||| ||
Sbjct 1034 CGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 975
Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433
|| ||||| || |||| || || | || || ||||| || || || || ||| | |
Sbjct 974 TCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTAT 915
Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493
||| | | || || ||| | || || |||||||| ||||||||||| | ||||
Sbjct 914 TCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGA 855
Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553
||||||||| |||||||||||||| | |||| | || | ||||| | |||| ||
Sbjct 854 TGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 795
Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613
| ||| ||||| || |||||||||||||| | || || || ||| | || |||||
Sbjct 794 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 735
Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673
|||||| || || |||||||| || |||||||||||||| ||| | | ||||| |
Sbjct 734 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAAT 675
Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733
||| ||||| ||||||||||| |||||| | || || || || || ||||||| ||
Sbjct 674 TGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTAT 615
Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793
| | || ||||||||||||||||| ||||||||||| || ||||||||| | ||||| ||
Sbjct 614 GATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 555
Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853
|| ||||| || || | || ||||||||| ||| | |||| || || |
Sbjct 554 TGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 495
Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913
|| | || || || ||| | | || || | ||||||| || || ||||| ||
Sbjct 494 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGA 435
Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973
||| |||||||| ||||| ||||||||||| |||||||| || | || |||||||||||
Sbjct 434 AGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGC 375
Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033
||| || || ||||| ||| | | |||||||| | || || ||||| || ||||||||
Sbjct 374 TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTAT 315
Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093
||||||| |||| | || | ||| |||||||||||| | ||||||||||| || ||
Sbjct 314 TTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 255
Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153
|||||| | | | | | | |||| || || || || |||||||| ||| |||||||
Sbjct 254 CCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCG 195
Query 42154 TGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213
||| |||||||| | || || |||||||| || || || ||||||||||| || |||||
Sbjct 194 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCT 135
Query 42214 TGCATCCGTGGAGG 42227
|| | || ||||
Sbjct 134 AGCTGCTGTTGAGG 121
>seq31551
Length=1713
Score = 226 bits (250), Expect = 8e-55
Identities = 249/332 (75%), Gaps = 6/332 (2%)
Strand=Plus/Minus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
||||||| || |||||||| ||||| ||||| ||||| || |||||||| || ||||||
Sbjct 1059 GGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 1000
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010
|| || | ||||||||||||||||| | || ||||| ||| | |||||||| ||
Sbjct 999 GGCCGATTGATCTTCCAATATGCTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTA 940
Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070
||||| |||||||| |||||||| ||||| |||| | || | |||||||||||
Sbjct 939 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTT 880
Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA------CAGGTG 42124
|||| || |||||||| || ||||||||| | | | | | | ||| || ||
Sbjct 879 CACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTA 820
Query 42125 ATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAG 42184
|| || ||||||||||| | |||||||||| |||||||| | || || ||||||||
Sbjct 819 ATTAATACCTGGGCTGATCTCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAA 760
Query 42185 CGGAACGCACACAACTTCCCGCTTGACCTTGC 42216
|| || || || |||||||| || ||||| ||
Sbjct 759 CGTAATGCTCATAACTTCCCCCTAGACCTAGC 728
>seq31730
Length=297
Score = 188 bits (208), Expect = 2e-43
Identities = 212/284 (75%), Gaps = 0/284 (0%)
Strand=Plus/Plus
Query 41564 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCG 41623
||||| || |||||||||||||| | || || || ||| | || ||||| ||||||
Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60
Query 41624 TACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGC 41683
|| || |||||||| || ||||| |||||||| ||| | | || || |||| || ||
Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120
Query 41684 TCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTC 41743
||||||||||| |||||| | || || || || || ||||||| |||| | || |||
Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180
Query 41744 CAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTT 41803
|||||||||||||| || |||||||| || ||||||||| | || || || || |||||
Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240
Query 41804 GGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC 41847
|| || | ||| ||||||||| ||| | |||| || ||
Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 284
>seq31523
Length=225
Score = 172 bits (190), Expect = 2e-38
Identities = 158/200 (79%), Gaps = 0/200 (0%)
Strand=Plus/Plus
Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950
||||||| || |||||||||||||| ||||| ||||| || |||||||| || ||||||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010
|| || | ||||||||||||||||| || || ||||| ||| | | || ||||| ||
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070
||||| |||||||| |||||||| ||||| |||| | || | || |||||||||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 42071 AACTTGAATGGTTTCAACTT 42090
||| | ||||||||||| ||
Sbjct 205 AACCTAAATGGTTTCAATTT 224
>seq203
Length=8626763
Score = 129 bits (142), Expect = 2e-25
Identities = 160/219 (73%), Gaps = 0/219 (0%)
Strand=Plus/Minus
Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619
||||||||| |||| ||||||||| | || ||||| ||| | || ||||| ||||
Sbjct 3756519 TTACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGT 3756460
Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679
||| || || ||||| || || |||| |||||||| ||| | | || || |||| ||
Sbjct 3756459 TGCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 3756400
Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739
|| |||| ||||| |||||| | || || ||| | | ||||| | |||| | ||
Sbjct 3756399 AGGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGT 3756340
Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCA 41778
||||| ||||||||||| || |||||| |||| || ||
Sbjct 3756339 ATTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCA 3756301
>seq34854
Length=328
Score = 125 bits (138), Expect = 2e-24
Identities = 184/258 (71%), Gaps = 2/258 (1%)
Strand=Plus/Plus
Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319
||||||||||| | |||||||| || || | |||| ||| | ||| ||| |||| ||
Sbjct 59 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 117
Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379
|| |||||||| ||||| ||| || || || || || || ||||| || || ||
Sbjct 118 TTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 177
Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439
||| || |||| || || | ||||| ||||| || || || || ||| | |||| |
Sbjct 178 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCGGGTGCCATTATTCCTAC 237
Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499
| || || || | || || |||||||| |||||||| || | ||||||||||
Sbjct 238 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 297
Query 41500 GCTGTACAACGGCGGTCC 41517
| | ||||||||||||||
Sbjct 298 GTTATACAACGGCGGTCC 315
>seq77
Length=8408033
Score = 116 bits (128), Expect = 1e-21
Identities = 207/302 (69%), Gaps = 0/302 (0%)
Strand=Plus/Plus
Query 41402 TATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACAC 41461
||||| ||||| || || || || ||| | |||| | | || || || | ||
Sbjct 2698758 TATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTGCAT 2698817
Query 41462 TTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTC 41521
| |||||||| | |||||| | || ||||||||||| | |||||||||||||| |
Sbjct 2698818 ATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCTTAT 2698877
Query 41522 CAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAA 41581
| || | ||| | |||||| | |||| || | ||||||||| || |||||||||
Sbjct 2698878 GAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 2698937
Query 41582 CTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCC 41641
||||| | ||| ||||| ||| | | ||||| |||||| || || |||||||| ||
Sbjct 2698938 CTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 2698997
Query 41642 GCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATG 41701
||| | | ||| ||| | | || || |||| || ||||| |||| ||||
Sbjct 2698998 ATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCACATAAGTTTTTATGATTGTATG 2699057
Query 41702 CC 41703
||
Sbjct 2699058 CC 2699059
>seq85
Length=5226098
Score = 96.9 bits (106), Expect = 1e-15
Identities = 116/158 (73%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 42059 ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA 42118
|| |||||||||||| | ||||||||||| || |||||||| | | | | | | ||
Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285
Query 42119 CAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATG 42178
| || || || || |||| ||| ||| |||| |||| |||||||| | || || |||
Sbjct 1123284 CGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTTATG 1123225
Query 42179 CATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216
||||| | || || || |||||||| || ||||| ||
Sbjct 1123224 CATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 146151240496704
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