Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020865.1 Length=45730 Score E Sequences producing significant alignments: (Bits) Value seq444 560 3e-155 seq31551 226 8e-55 seq31730 188 2e-43 seq31523 172 2e-38 seq203 129 2e-25 seq34854 125 2e-24 seq77 116 1e-21 seq85 96.9 1e-15 >seq444 Length=4271 Score = 560 bits (620), Expect = 3e-155 Identities = 710/974 (73%), Gaps = 2/974 (0%) Strand=Plus/Minus Query 41255 ACTAATAACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-C 41313 ||| | ||||||||||| | |||||||| || || | ||||| || | ||| ||| | Sbjct 1093 ACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCC-TACCTTATTGAC 1035 Query 41314 CGCTACAACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAAT 41373 ||| || || |||||||||||| || ||| || || || || || || ||||| || Sbjct 1034 CGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTCCAGTAGATATTGATGGTAT 975 Query 41374 CCGAGAACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGT 41433 || ||||| || |||| || || | || || ||||| || || || || ||| | | Sbjct 974 TCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATATTATTTCCGGTGCCATTAT 915 Query 41434 TCCGAGCAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGA 41493 ||| | | || || ||| | || || |||||||| ||||||||||| | |||| Sbjct 914 TCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCTGGGAAGCTGCATCCGTTGA 855 Query 41494 TGAATGGCTGTACAACGGCGGTCCATTCCAACTCACCGTATTCCACTTCCTCATTGGCGT 41553 ||||||||| |||||||||||||| | |||| | || | ||||| | |||| || Sbjct 854 TGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTCTACACTTTTTACTTGGTGT 795 Query 41554 CTTTGCTTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGAT 41613 | ||| ||||| || |||||||||||||| | || || || ||| | || ||||| Sbjct 794 AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGTCCTTGGAT 735 Query 41614 CTTTGTTGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTT 41673 |||||| || || |||||||| || |||||||||||||| ||| | | ||||| | Sbjct 734 TGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTGCTGTTTTCTTGATCTATCCAAT 675 Query 41674 TGGACAGGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACAT 41733 ||| ||||| ||||||||||| |||||| | || || || || || ||||||| || Sbjct 674 TGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTAT 615 Query 41734 GCTGGTGTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGC 41793 | | || ||||||||||||||||| ||||||||||| || ||||||||| | ||||| || Sbjct 614 GATTGTATTCCAGGCTGAGCACAACATTCTTATGCACCCATTTCACATGTTAGGTGTAGC 555 Query 41794 CGGCGTATTTGGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTCGTCACT 41853 || ||||| || || | || ||||||||| ||| | |||| || || | Sbjct 554 TGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATGGTTCCTTGGTAACTTCTAGTTT 495 Query 41854 CATTCGTGAGACGACTGAAGAGGTTTCACAGAACTATGGTTACAAGTTTGGTCAAGAGGA 41913 || | || || || ||| | | || || | ||||||| || || ||||| || Sbjct 494 GATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAGGTTACAGATTCGGGCAAGAAGA 435 Query 41914 AGAGACTTACAATATTGTTGCTGCTCACGGCTATTTTGGTCGGCTTATCTTCCAATATGC 41973 ||| |||||||| ||||| ||||||||||| |||||||| || | || ||||||||||| Sbjct 434 AGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGC 375 Query 41974 TAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTTGCTGCCTGGCCTGTTGTAGGTAT 42033 ||| || || ||||| ||| | | |||||||| | || || ||||| || |||||||| Sbjct 374 TAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAGCGGCTTGGCCGGTAGTAGGTAT 315 Query 42034 TTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTCAACTTGAATGGTTTCAACTTTAA 42093 ||||||| |||| | || | ||| |||||||||||| | ||||||||||| || || Sbjct 314 TTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCAACCTAAATGGTTTCAATTTCAA 255 Query 42094 CCAATCTCTGCTAGCTGCTGATGGACAGGTGATCAACACCTGGGCTGACATTCTTAACCG 42153 |||||| | | | | | | |||| || || || || |||||||| ||| ||||||| Sbjct 254 CCAATCAGTAGTTGATAGTCAAGGACGTGTTATTAATACTTGGGCTGATATTATTAACCG 195 Query 42154 TGCCAACCTTGGCTTTGAGGTGATGCATGAGCGGAACGCACACAACTTCCCGCTTGACCT 42213 ||| |||||||| | || || |||||||| || || || ||||||||||| || ||||| Sbjct 194 TGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCACAACTTCCCTCTAGACCT 135 Query 42214 TGCATCCGTGGAGG 42227 || | || |||| Sbjct 134 AGCTGCTGTTGAGG 121 >seq31551 Length=1713 Score = 226 bits (250), Expect = 8e-55 Identities = 249/332 (75%), Gaps = 6/332 (2%) Strand=Plus/Minus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||||| ||||| ||||| ||||| || |||||||| || |||||| Sbjct 1059 GGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 1000 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || | ||||||||||||||||| | || ||||| ||| | |||||||| || Sbjct 999 GGCCGATTGATCTTCCAATATGCTAGTGTCAACAATTCTCGTTCCTTACATTTCTTCCTA 940 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 ||||| |||||||| |||||||| ||||| |||| | || | ||||||||||| Sbjct 939 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCACCATGGCTTTT 880 Query 42071 AACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA------CAGGTG 42124 |||| || |||||||| || ||||||||| | | | | | | ||| || || Sbjct 879 CACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGAAAAGGTCATGTA 820 Query 42125 ATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATGCATGAG 42184 || || ||||||||||| | |||||||||| |||||||| | || || |||||||| Sbjct 819 ATTAATACCTGGGCTGATCTCATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAA 760 Query 42185 CGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 || || || || |||||||| || ||||| || Sbjct 759 CGTAATGCTCATAACTTCCCCCTAGACCTAGC 728 >seq31730 Length=297 Score = 188 bits (208), Expect = 2e-43 Identities = 212/284 (75%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 41564 ATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCG 41623 ||||| || |||||||||||||| | || || || ||| | || ||||| |||||| Sbjct 1 ATGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCA 60 Query 41624 TACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGC 41683 || || |||||||| || ||||| |||||||| ||| | | || || |||| || || Sbjct 61 TATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGA 120 Query 41684 TCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGTGTTC 41743 ||||||||||| |||||| | || || || || || ||||||| |||| | || ||| Sbjct 121 AGTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTC 180 Query 41744 CAGGCTGAGCACAATATTCTTATGCATCCTTTTCACATGCTGGGTGTGGCCGGCGTATTT 41803 |||||||||||||| || |||||||| || ||||||||| | || || || || ||||| Sbjct 181 CAGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTC 240 Query 41804 GGTGGGAGTTTGTTCTCTGCTATGCACGGTAGCCTGGTCACGTC 41847 || || | ||| ||||||||| ||| | |||| || || Sbjct 241 GGCGGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTC 284 >seq31523 Length=225 Score = 172 bits (190), Expect = 2e-38 Identities = 158/200 (79%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 41891 GGTTACAAGTTTGGTCAAGAGGAAGAGACTTACAATATTGTTGCTGCTCACGGCTATTTT 41950 ||||||| || |||||||||||||| ||||| ||||| || |||||||| || |||||| Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 41951 GGTCGGCTTATCTTCCAATATGCTAGCTTTAATAATTCCCGTAGTCTTCATTTCTTTCTT 42010 || || | ||||||||||||||||| || || ||||| ||| | | || ||||| || Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 42011 GCTGCCTGGCCTGTTGTAGGTATTTGGTTTGCTGCGCTTGGCGTGTCTACCATGGCTTTC 42070 ||||| |||||||| |||||||| ||||| |||| | || | || ||||||||| Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 42071 AACTTGAATGGTTTCAACTT 42090 ||| | ||||||||||| || Sbjct 205 AACCTAAATGGTTTCAATTT 224 >seq203 Length=8626763 Score = 129 bits (142), Expect = 2e-25 Identities = 160/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 41560 TTACATGGGACGAGAGTGGGAACTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGT 41619 ||||||||| |||| ||||||||| | || ||||| ||| | || ||||| |||| Sbjct 3756519 TTACATGGGTTATGAGTAGGAACTTAGTTTCCGTCTAGGTATGCGCCCTTGGATTGTTGT 3756460 Query 41620 TGCGTACTCTGCTCCTGTCGCCGCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACA 41679 ||| || || ||||| || || |||| |||||||| ||| | | || || |||| || Sbjct 3756459 TGCATATTCAGCTCCGGTTGCAACTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCA 3756400 Query 41680 GGGCTCTTTTTCTGATGCTATGCCCTTGGGGATATCCGGCACCTTCAACTACATGCTGGT 41739 || |||| ||||| |||||| | || || ||| | | ||||| | |||| | || Sbjct 3756399 AGGAAGATTTTATGATGATATGCCTCTAGGAATTTCCAGTGCTTTCAATTTCATGATTGT 3756340 Query 41740 GTTCCAGGCTGAGCACAATATTCTTATGCATCCTTTTCA 41778 ||||| ||||||||||| || |||||| |||| || || Sbjct 3756339 ATTCCAAGCTGAGCACAACATCCTTATGTATCCATTGCA 3756301 >seq34854 Length=328 Score = 125 bits (138), Expect = 2e-24 Identities = 184/258 (71%), Gaps = 2/258 (1%) Strand=Plus/Plus Query 41261 AACCGTCTTTATGTAGGATGGTTCGGAGTCCTTATGATTCCGTGCCTCCTTG-CCGCTAC 41319 ||||||||||| | |||||||| || || | |||| ||| | ||| ||| |||| || Sbjct 59 AACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACCGCAAC 117 Query 41320 AACTTGTTTTATTATCGCCTTTGTTGGCGCACCACCTGTTGACATCGATGGAATCCGAGA 41379 || |||||||| ||||| ||| || || || || || || ||||| || || || Sbjct 118 TTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGA 177 Query 41380 ACCCGTCGCTGGCTCCCTGTTGTATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAG 41439 ||| || |||| || || | ||||| ||||| || || || || ||| | |||| | Sbjct 178 ACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCGGGTGCCATTATTCCTAC 237 Query 41440 CAGTAATGCCATCGGACTACACTTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATG 41499 | || || || | || || |||||||| |||||||| || | |||||||||| Sbjct 238 TTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAATG 297 Query 41500 GCTGTACAACGGCGGTCC 41517 | | |||||||||||||| Sbjct 298 GTTATACAACGGCGGTCC 315 >seq77 Length=8408033 Score = 116 bits (128), Expect = 1e-21 Identities = 207/302 (69%), Gaps = 0/302 (0%) Strand=Plus/Plus Query 41402 TATGGTAACAACATCATATCAGGAGCCGTCGTTCCGAGCAGTAATGCCATCGGACTACAC 41461 ||||| ||||| || || || || ||| | |||| | | || || || | || Sbjct 2698758 TATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTGCAT 2698817 Query 41462 TTCTACCCAATTTGGGAAGCTGCTACACTTGATGAATGGCTGTACAACGGCGGTCCATTC 41521 | |||||||| | |||||| | || ||||||||||| | |||||||||||||| | Sbjct 2698818 ATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCTTAT 2698877 Query 41522 CAACTCACCGTATTCCACTTCCTCATTGGCGTCTTTGCTTACATGGGACGAGAGTGGGAA 41581 | || | ||| | |||||| | |||| || | ||||||||| || ||||||||| Sbjct 2698878 GAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGGGAA 2698937 Query 41582 CTTAGCTATCGACTAGGGATGAGGCCCTGGATCTTTGTTGCGTACTCTGCTCCTGTCGCC 41641 ||||| | ||| ||||| ||| | | ||||| |||||| || || |||||||| || Sbjct 2698938 CTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCA 2698997 Query 41642 GCTGCGACTGCTGTGTTCCTTGTTTATCCGTTTGGACAGGGCTCTTTTTCTGATGCTATG 41701 ||| | | ||| ||| | | || || |||| || ||||| |||| |||| Sbjct 2698998 ATTGCTATTATTGTTTTCTTGATCTACCCAATTGGTCACATAAGTTTTTATGATTGTATG 2699057 Query 41702 CC 41703 || Sbjct 2699058 CC 2699059 >seq85 Length=5226098 Score = 96.9 bits (106), Expect = 1e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 42059 ACCATGGCTTTCAACTTGAATGGTTTCAACTTTAACCAATCTCTGCTAGCTGCTGATGGA 42118 || |||||||||||| | ||||||||||| || |||||||| | | | | | | || Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGATAGTCAAGGT 1123285 Query 42119 CAGGTGATCAACACCTGGGCTGACATTCTTAACCGTGCCAACCTTGGCTTTGAGGTGATG 42178 | || || || || |||| ||| ||| |||| |||| |||||||| | || || ||| Sbjct 1123284 CGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTTATG 1123225 Query 42179 CATGAGCGGAACGCACACAACTTCCCGCTTGACCTTGC 42216 ||||| | || || || |||||||| || ||||| || Sbjct 1123224 CATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146151240496704