Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020867.1 Length=44892 Score E Sequences producing significant alignments: (Bits) Value seq444 585 8e-163 seq31551 219 1e-52 seq31730 188 2e-43 seq34854 174 5e-39 seq31523 163 8e-36 seq85 116 1e-21 seq134 93.3 1e-14 seq31544 87.8 5e-13 >seq444 Length=4271 Score = 585 bits (648), Expect = 8e-163 Identities = 736/1005 (73%), Gaps = 4/1005 (0%) Strand=Plus/Minus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | ||| ||| | ||||||||||| |||| |||||| Sbjct 1123 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1064 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398 ||||| ||||||| |||| || | | | || || | ||||||| |||| ||||| Sbjct 1063 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCAT 1005 Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458 |||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| || Sbjct 1004 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 945 Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518 || ||||| || || || |||||| | | |||| | || |||||| | ||||| Sbjct 944 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTT 885 Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578 || | ||||||||||| || |||| |||||||| ||||| ||||| |||||| | Sbjct 884 TTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGA 825 Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638 || | || | ||||| | | ||| | | ||| |||| || || |||||||| Sbjct 824 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 765 Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698 | | ||| || || ||| | || ||||| |||||| || || || ||||| || || Sbjct 764 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 705 Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758 |||||||| || ||| | |||||||| |||| || || |||||| ||||| ||||| Sbjct 704 TGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCC 645 Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818 ||| || || || ||||| |||||||| ||| | || ||||||||||| || |||||||| Sbjct 644 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 585 Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878 |||||| || || || ||| | ||||| || || ||||| || || || | || || Sbjct 584 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGC 525 Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938 |||||||||| | || || ||| | | | | ||||| || ||||| ||| Sbjct 524 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 465 Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998 ||| | || |||| ||||| ||||| || || ||||| |||||||| || || || || Sbjct 464 TAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 405 Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057 ||| ||||| || | || ||||||||||| | |||| || ||| ||| ||||| || | Sbjct 404 TTATTTTGGCCGATTGATTTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 346 Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117 |||| | || |||||||| || || || |||||||| ||| || | || | ||||||| Sbjct 345 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 286 Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177 |||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | || Sbjct 285 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 226 Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237 | || |||||||||||||||| | || ||||| |||||||| | || || ||||| | Sbjct 225 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 166 Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282 | || ||||| || |||||||| || || || || | || |||| Sbjct 165 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 121 >seq31551 Length=1713 Score = 219 bits (242), Expect = 1e-52 Identities = 300/415 (72%), Gaps = 8/415 (2%) Strand=Plus/Minus Query 42877 GCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGC 42936 |||||||||||| | || |||||| | | | | ||||| || ||||| ||| Sbjct 1128 GCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 1069 Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996 ||| || |||| ||||||||||| || || |||||||| || || || || ||| Sbjct 1068 GCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCTGCTCAT 1009 Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGT-TTAATAATAGTCGCTCTTTGCA 43055 ||||| ||||| || | |||||||||||||| | || | || ||| ||| || || || Sbjct 1008 GGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTGTCAACAATTCTCGTTCCTTACA 950 Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115 ||||| || || |||||||| || || || || ||||||||| || | || | || || Sbjct 949 TTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCAC 890 Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCA--GAA- 43172 ||||| ||| |||| || ||||| || || |||||||| | ||||||| ||| ||| Sbjct 889 CATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGAAA 830 Query 43173 ---TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGT 43229 |||||| || ||| ||||||||| | | || ||||| |||||||| | || || Sbjct 829 AGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCGTGCTAACCTTGGTATGGAAGT 770 Query 43230 GATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284 ||||| || || ||||| ||||||||||| || || || || | || || ||| Sbjct 769 TATGCATGAACGTAATGCTCATAACTTCCCCCTAGACCTAGCTGCTGTTGAAGTT 715 >seq31730 Length=297 Score = 188 bits (208), Expect = 2e-43 Identities = 203/269 (75%), Gaps = 0/269 (0%) Strand=Plus/Plus Query 42620 TGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTT 42679 |||| || || ||||||||| | ||| || || ||| | || ||||| |||||| | Sbjct 2 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 61 Query 42680 ACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTT 42739 | || || ||||| || || || ||||| || ||| | |||| ||| |||| ||||| Sbjct 62 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAA 121 Query 42740 CTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCC 42799 |||||| ||||| |||||||| || ||||| ||||| |||||||||||| | || |||| Sbjct 122 GTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCC 181 Query 42800 AGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTG 42859 ||||||| || ||||| |||||||| || || || ||| | || || || || ||||| | Sbjct 182 AGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCG 241 Query 42860 GTGGGTCGTTGTTCTCAGCTATGCATGGT 42888 | || || | ||| |||||||||||| Sbjct 242 GCGGCTCCCTATTCAGTGCTATGCATGGT 270 >seq34854 Length=328 Score = 174 bits (192), Expect = 5e-39 Identities = 224/304 (74%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339 |||| || || ||||||||| | || || | ||||||||||| |||| |||||| Sbjct 23 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 82 Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397 ||||| ||||||| |||| || | | | || || | ||| |||||| | || |||| Sbjct 83 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCA 140 Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457 ||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || | Sbjct 141 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 200 Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517 |||| ||||| || ||||| |||||| | | |||| | || || || | |||| Sbjct 201 ATGGAAACAATATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATT 260 Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577 | || | || |||||||| | |||| |||||| | ||||| ||||| |||||| Sbjct 261 TTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATG 320 Query 42578 AGCT 42581 |||| Sbjct 321 AGCT 324 >seq31523 Length=225 Score = 163 bits (180), Expect = 8e-36 Identities = 162/207 (78%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999 ||| | || |||| |||||||||||||| || |||||||| || || || || |||||| Sbjct 19 AATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGT 78 Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTT 43058 || ||||| || | |||||||||||||| | |||| || ||| ||| ||||| ||||| Sbjct 79 TATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACACTT 137 Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118 ||| || || |||||||| || || || || ||||||||| || | || |||| ||||| Sbjct 138 CTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTAT 197 Query 43119 GGCGTTTAACTTGAATGGTTTTAACTT 43145 ||| || ||| | |||||||| || || Sbjct 198 GGCTTTCAACCTAAATGGTTTCAATTT 224 >seq85 Length=5226098 Score = 116 bits (128), Expect = 1e-21 Identities = 130/174 (75%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 43098 TTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACT 43157 |||| ||| |||| |||||||| || ||| | |||||||| || || |||||||| | Sbjct 1123360 TTCTTGTGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGT 1123301 Query 43158 TGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCT 43217 ||||||| ||| || ||| || ||| |||| ||||||| | ||| |||| ||||| Sbjct 1123300 AGTTGATAGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCT 1123241 Query 43218 TGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271 ||| | || || ||||| || | ||||| ||||||||||| || || || || Sbjct 1123240 TGGTATGGAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187 >seq134 Length=15115857 Score = 93.3 bits (102), Expect = 1e-14 Identities = 182/265 (69%), Gaps = 3/265 (1%) Strand=Plus/Minus Query 42334 TGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGC 42392 ||||||||||| |||||| ||||| || | | | | | || | |||||| | || Sbjct 3765998 TGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACTC-AGCTTCTATATTTATTATTGC 3765941 Query 42393 TTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCT 42452 ||||||| ||| ||||| || || |||||||| || || | ||| | ||||| ||||| Sbjct 3765940 CTTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCT 3765881 Query 42453 TCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACT 42512 || ||||| ||||| || || | || || | | | |||| || | || || | Sbjct 3765880 ACTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTT 3765821 Query 42513 ACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACC 42572 ||||| || || || |||||||| | |||| |||||| | ||||| | | | || Sbjct 3765820 GCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTCC 3765761 Query 42573 TTATCAGCTCGTCGTGTTCCACTTC 42597 |||| |||| | || | |||||| Sbjct 3765760 TTATGAGCTAATTGTTCTACACTTC 3765736 >seq31544 Length=164 Score = 87.8 bits (96), Expect = 5e-13 Identities = 93/123 (76%), Gaps = 0/123 (0%) Strand=Plus/Plus Query 43149 CCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCG 43208 |||||| | ||||||| ||| || ||| || ||| |||||||||||| | ||||| Sbjct 1 CCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCG 60 Query 43209 TGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCT 43268 ||| || ||||| | || || ||||| || || ||||| ||||||||||| || || || Sbjct 61 TGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 120 Query 43269 TGC 43271 || Sbjct 121 AGC 123 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143470798854048