Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_020867.1
Length=44892
Score E
Sequences producing significant alignments: (Bits) Value
seq444 585 8e-163
seq31551 219 1e-52
seq31730 188 2e-43
seq34854 174 5e-39
seq31523 163 8e-36
seq85 116 1e-21
seq134 93.3 1e-14
seq31544 87.8 5e-13
>seq444
Length=4271
Score = 585 bits (648), Expect = 8e-163
Identities = 736/1005 (73%), Gaps = 4/1005 (0%)
Strand=Plus/Minus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || || ||||||||| | ||| ||| | ||||||||||| |||| ||||||
Sbjct 1123 TGGGGTCGCTTCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTT 1064
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGTTTTATTGTCGCTTTCAT 42398
||||| ||||||| |||| || | | | || || | ||||||| |||| |||||
Sbjct 1063 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCAT 1005
Query 42399 TGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGTA 42458
|||||| ||||| ||||| |||||||| |||||||||||||| ||||| |||||||| ||
Sbjct 1004 TGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTA 945
Query 42459 TGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATTT 42518
|| ||||| || || || |||||| | | |||| | || |||||| | |||||
Sbjct 944 CGGAAACAATATTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTT 885
Query 42519 GTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATCA 42578
|| | ||||||||||| || |||| |||||||| ||||| ||||| |||||| |
Sbjct 884 TTACCCAATCTGGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGA 825
Query 42579 GCTCGTCGTGTTCCACTTCCTTATCGGTATCTTCTCTTACTTGGGACGCGAATGGGAACT 42638
|| | || | ||||| | | ||| | | ||| |||| || || ||||||||
Sbjct 824 ACTAATTGTTCTACACTTTTTACTTGGTGTAGCTTGTTATATGGGTCGTGAGTGGGAACT 765
Query 42639 TTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTTACTCTGCCCCTGTGGCTGC 42698
| | ||| || || ||| | || ||||| |||||| || || || ||||| || ||
Sbjct 764 TAGTTTCCGTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGC 705
Query 42699 AGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTTCTTTTTCAGATGGAATGCC 42758
|||||||| || ||| | |||||||| |||| || || |||||| ||||| |||||
Sbjct 704 TGCGACTGCTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCC 645
Query 42759 TCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCCAGGCTGAACATAACATTCT 42818
||| || || || ||||| |||||||| ||| | || ||||||||||| || ||||||||
Sbjct 644 TCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCT 585
Query 42819 TATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTGGTGGGTCGTTGTTCTCAGC 42878
|||||| || || || ||| | ||||| || || ||||| || || || | || ||
Sbjct 584 TATGCACCCATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGC 525
Query 42879 TATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGCCA 42938
|||||||||| | || || ||| | | | | ||||| || ||||| |||
Sbjct 524 TATGCATGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGC 465
Query 42939 AAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGG 42998
||| | || |||| ||||| ||||| || || ||||| |||||||| || || || ||
Sbjct 464 TAATGAAGGTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGG 405
Query 42999 TTACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACT 43057
||| ||||| || | || ||||||||||| | |||| || ||| ||| ||||| || |
Sbjct 404 TTATTTTGGCCGATTGATTTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACATT 346
Query 43058 TCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTA 43117
|||| | || |||||||| || || || |||||||| ||| || | || | |||||||
Sbjct 345 TCTTCTTAGCGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTA 286
Query 43118 TGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCAGAATCATG 43177
|||| || ||| | |||||||| || || ||||||||| | ||||||| ||| | ||
Sbjct 285 TGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGATAGTCAAGGACGTG 226
Query 43178 TCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGTGATGCACG 43237
| || |||||||||||||||| | || ||||| |||||||| | || || ||||| |
Sbjct 225 TTATTAATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATG 166
Query 43238 AGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGG 43282
| || ||||| || |||||||| || || || || | || ||||
Sbjct 165 AACGTAATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAGG 121
>seq31551
Length=1713
Score = 219 bits (242), Expect = 1e-52
Identities = 300/415 (72%), Gaps = 8/415 (2%)
Strand=Plus/Minus
Query 42877 GCTATGCATGGTAGTCTTGTCACCTCTTCTCTTGTGCGTGAAACGACTGAAAACGAAAGC 42936
|||||||||||| | || |||||| | | | | ||||| || ||||| |||
Sbjct 1128 GCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCT 1069
Query 42937 CAAAATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCAT 42996
||| || |||| ||||||||||| || || |||||||| || || || || |||
Sbjct 1068 GCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAACTTATAATATCGTAGCTGCTCAT 1009
Query 42997 GGTTACTTTGGACGGCTTATCTTCCAATATGCGTCGT-TTAATAATAGTCGCTCTTTGCA 43055
||||| ||||| || | |||||||||||||| | || | || ||| ||| || || ||
Sbjct 1008 GGTTATTTTGGCCGATTGATCTTCCAATATGC-TAGTGTCAACAATTCTCGTTCCTTACA 950
Query 43056 CTTCTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTAC 43115
||||| || || |||||||| || || || || ||||||||| || | || | || ||
Sbjct 949 TTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATTAGCAC 890
Query 43116 TATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACTTGTTGATAATCA--GAA- 43172
||||| ||| |||| || ||||| || || |||||||| | ||||||| ||| |||
Sbjct 889 CATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATCTGTAGTTGATAGTCAAGGAAA 830
Query 43173 ---TCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCTTGGCTTTGAGGT 43229
|||||| || ||| ||||||||| | | || ||||| |||||||| | || ||
Sbjct 829 AGGTCATGTAATTAATACCTGGGCTGATCTCATTAACCGTGCTAACCTTGGTATGGAAGT 770
Query 43230 GATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGCATCCGTGGAGGTT 43284
||||| || || ||||| ||||||||||| || || || || | || || |||
Sbjct 769 TATGCATGAACGTAATGCTCATAACTTCCCCCTAGACCTAGCTGCTGTTGAAGTT 715
>seq31730
Length=297
Score = 188 bits (208), Expect = 2e-43
Identities = 203/269 (75%), Gaps = 0/269 (0%)
Strand=Plus/Plus
Query 42620 TGGGACGCGAATGGGAACTTTCGTACCGACTTGGGATGAGGCCCTGGATCTTTGTTGCTT 42679
|||| || || ||||||||| | ||| || || ||| | || ||||| |||||| |
Sbjct 2 TGGGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCAT 61
Query 42680 ACTCTGCCCCTGTGGCTGCAGCGACTGCAGTCTTCCTTGTCTATCCATTTGGGCAAGGTT 42739
| || || ||||| || || || ||||| || ||| | |||| ||| |||| |||||
Sbjct 62 ATTCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAA 121
Query 42740 CTTTTTCAGATGGAATGCCTCTTGGCATTTCCGGTACGTTCAACTTCATGTTGGTCTTCC 42799
|||||| ||||| |||||||| || ||||| ||||| |||||||||||| | || ||||
Sbjct 122 GTTTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCC 181
Query 42800 AGGCTGAACATAACATTCTTATGCATCCTTTCCATATGCTTGGTGTTGCCGGCGTATTTG 42859
||||||| || ||||| |||||||| || || || ||| | || || || || ||||| |
Sbjct 182 AGGCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCG 241
Query 42860 GTGGGTCGTTGTTCTCAGCTATGCATGGT 42888
| || || | ||| ||||||||||||
Sbjct 242 GCGGCTCCCTATTCAGTGCTATGCATGGT 270
>seq34854
Length=328
Score = 174 bits (192), Expect = 5e-39
Identities = 224/304 (74%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 42280 TGGGATCAGTTTTGTAACTGGGTGACTTCGACTAACAACCGTCTTTATGTTGGGTGGTTT 42339
|||| || || ||||||||| | || || | ||||||||||| |||| ||||||
Sbjct 23 TGGGGTCGCTTCTGTAACTGGATAACCAGCACCGAAAACCGTCTTTACATTGGATGGTTT 82
Query 42340 GGTGTGCTGATGATTCCCTGTCTGCTCG-CTGCTACCACCTGT-TTTATTGTCGCTTTCA 42397
||||| ||||||| |||| || | | | || || | ||| |||||| | || ||||
Sbjct 83 GGTGTTTTGATGAT-CCCTACCTTATTGACCGCAACTTC-TGTATTTATTATTGCCTTCA 140
Query 42398 TTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCTTCTGT 42457
||||||| ||||| ||||| |||||||| |||||||||||||| ||||| ||||| || |
Sbjct 141 TTGCTGCTCCTCCAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTACTTT 200
Query 42458 ATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACTACATT 42517
|||| ||||| || ||||| |||||| | | |||| | || || || | ||||
Sbjct 201 ATGGAAACAATATTATCTCGGGTGCCATTATTCCTACTTCTGCAGCTATAGGTTTGCATT 260
Query 42518 TGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACCTTATC 42577
| || | || |||||||| | |||| |||||| | ||||| ||||| ||||||
Sbjct 261 TTTACCCAATATGGGAAGCGGCATCTGTTGATGAATGGTTATACAACGGCGGTCCTTATG 320
Query 42578 AGCT 42581
||||
Sbjct 321 AGCT 324
>seq31523
Length=225
Score = 163 bits (180), Expect = 8e-36
Identities = 162/207 (78%), Gaps = 2/207 (1%)
Strand=Plus/Plus
Query 42940 AATTATGGCTACAAGTTCGGTCAAGAGGAGGAGACTTATAACATTGTTGCAGCGCATGGT 42999
||| | || |||| |||||||||||||| || |||||||| || || || || ||||||
Sbjct 19 AATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGT 78
Query 43000 TACTTTGGACGGCTTATCTTCCAATATGCGTCGTTT-AATAATAGTCGCTCTTTGCACTT 43058
|| ||||| || | |||||||||||||| | |||| || ||| ||| ||||| |||||
Sbjct 79 TATTTTGGCCGATTGATCTTCCAATATGC-TAGTTTCAACAATTCTCGTTCTTTACACTT 137
Query 43059 CTTTCTTGCCGCTTGGCCCGTTGTGGGGATTTGGTTCACTTCTCTTGGCGTCAGTACTAT 43118
||| || || |||||||| || || || || ||||||||| || | || |||| |||||
Sbjct 138 CTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTAT 197
Query 43119 GGCGTTTAACTTGAATGGTTTTAACTT 43145
||| || ||| | |||||||| || ||
Sbjct 198 GGCTTTCAACCTAAATGGTTTCAATTT 224
>seq85
Length=5226098
Score = 116 bits (128), Expect = 1e-21
Identities = 130/174 (75%), Gaps = 0/174 (0%)
Strand=Plus/Minus
Query 43098 TTCTCTTGGCGTCAGTACTATGGCGTTTAACTTGAATGGTTTTAACTTTAACCAATCACT 43157
|||| ||| |||| |||||||| || ||| | |||||||| || || |||||||| |
Sbjct 1123360 TTCTTGTGGTATCAGCACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGT 1123301
Query 43158 TGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCGTGCCAACCT 43217
||||||| ||| || ||| || ||| |||| ||||||| | ||| |||| |||||
Sbjct 1123300 AGTTGATAGTCAAGGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCT 1123241
Query 43218 TGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCTTGC 43271
||| | || || ||||| || | ||||| ||||||||||| || || || ||
Sbjct 1123240 TGGTATGGAAGTTATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGC 1123187
>seq134
Length=15115857
Score = 93.3 bits (102), Expect = 1e-14
Identities = 182/265 (69%), Gaps = 3/265 (1%)
Strand=Plus/Minus
Query 42334 TGGTTTGGTGTGCTGATGATTCCCTGTCTGCTCGCTGCTACCACCTGT-TTTATTGTCGC 42392
||||||||||| |||||| ||||| || | | | | | || | |||||| | ||
Sbjct 3765998 TGGTTTGGTGTTTTGATGA-TCCCTACCTTATTGACTC-AGCTTCTATATTTATTATTGC 3765941
Query 42393 TTTCATTGCTGCCCCTCCGGTAGACATTGATGGCATTCGTGAACCTGTCTCTGGCTCTCT 42452
||||||| ||| ||||| || || |||||||| || || | ||| | ||||| |||||
Sbjct 3765940 CTTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTCT 3765881
Query 42453 TCTGTATGGCAACAACATCATCTCTGGTGCCGTCGTGCCTAGCAGTAACGCAATTGGACT 42512
|| ||||| ||||| || || | || || | | | |||| || | || || |
Sbjct 3765880 ACTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTTT 3765821
Query 42513 ACATTTGTATTCGATCTGGGAAGCCAATACCCTTGACGAATGGCTCTACAATGGCGGACC 42572
||||| || || || |||||||| | |||| |||||| | ||||| | | | ||
Sbjct 3765820 GCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTCC 3765761
Query 42573 TTATCAGCTCGTCGTGTTCCACTTC 42597
|||| |||| | || | ||||||
Sbjct 3765760 TTATGAGCTAATTGTTCTACACTTC 3765736
>seq31544
Length=164
Score = 87.8 bits (96), Expect = 5e-13
Identities = 93/123 (76%), Gaps = 0/123 (0%)
Strand=Plus/Plus
Query 43149 CCAATCACTTGTTGATAATCAGAATCATGTCATCCCTACTTGGGCTGATATTTTGAATCG 43208
|||||| | ||||||| ||| || ||| || ||| |||||||||||| | |||||
Sbjct 1 CCAATCCGTAGTTGATAGTCAAGGTCGTGTAATTAATACCTGGGCTGATATTATTAATCG 60
Query 43209 TGCCAACCTTGGCTTTGAGGTGATGCACGAGCGGAATGCACATAACTTCCCGCTTGATCT 43268
||| || ||||| | || || ||||| || || ||||| ||||||||||| || || ||
Sbjct 61 TGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCTCTAGACCT 120
Query 43269 TGC 43271
||
Sbjct 121 AGC 123
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 143470798854048
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |