Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020874.1 Length=46198 Score E Sequences producing significant alignments: (Bits) Value seq444 506 6e-139 seq31551 201 3e-47 seq31730 152 2e-32 seq34854 141 3e-29 seq31523 132 1e-26 seq85 116 1e-21 seq203 96.9 1e-15 seq77 96.9 1e-15 >seq444 Length=4271 Score = 506 bits (560), Expect = 6e-139 Identities = 702/983 (71%), Gaps = 0/983 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||| ||||||||||| || ||||||||||| | || |||||| Sbjct 132 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 191 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || ||||| | | ||||||||| ||| || | ||| | | ||| |||||||| Sbjct 192 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 251 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056 ||||| || || |||||||||||||| || ||||| || | ||||| | || || | | Sbjct 252 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 311 Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116 || || || || |||||||||| || | |||||||| | |||||| || || ||| Sbjct 312 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 371 Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176 || ||||| || ||||| |||| ||||| || ||||| ||||| ||||| || || || Sbjct 372 CTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 431 Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236 ||||| |||||||| || | || || | ||| || | | ||||| ||||| Sbjct 432 TCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 491 Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296 || | ||||| ||||| || ||||||||| ||||| | || ||||| || Sbjct 492 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACA 551 Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356 ||||| ||||| ||| || ||||||||||| || || || || || || |||||||| Sbjct 552 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 611 Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416 | ||||||||| |||||||||||||| || |||||||| |||||| |||||| || || Sbjct 612 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 671 Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476 || | ||||| | ||||| || || || || | | || |||| |||||||||| Sbjct 672 CCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACA 731 Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536 ||||| || | ||| || || | | || |||||||||| | || ||| Sbjct 732 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 791 Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596 ||||| || | ||| ||||| | | ||| |||| ||| || ||||| ||||||||||| Sbjct 792 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCAT 851 Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656 || || | | ||||||||||||| ||||||||||| | ||| || || ||| | Sbjct 852 TCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTA 911 Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716 || | | || || || || |||||||||||||| | | || || ||||| || ||| Sbjct 912 GGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 971 Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTG 26776 || || ||||| |||||||| || || || || ||||| || | |||||| | ||| Sbjct 972 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTT 1031 Query 26777 GCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCA 26836 || | | |||| || ||||| | || || |||||||| | || |||||||| ||| Sbjct 1032 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1091 Query 26837 GTACTTGTAACCCACTCACAAAA 26859 || || || | ||| | ||| || Sbjct 1092 GTGCTAGTTATCCAGTTACAGAA 1114 >seq31551 Length=1713 Score = 201 bits (222), Expect = 3e-47 Identities = 239/323 (74%), Gaps = 6/323 (2%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || ||||||||||||||||| || ||||||||||| | || |||||| Sbjct 728 GCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 787 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATT-----ATCTTTCCATTAAC-ATCTACT 25990 || ||||| | | ||||||||| ||| ||| | |||| | || || ||| ||| Sbjct 788 GCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGACTATCAACT 847 Query 25991 ACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGAT 26050 || || ||||| || || ||||| |||| || ||| ||||| |||| ||||| | || Sbjct 848 ACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATACCTAAAGCA 907 Query 26051 GTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTA 26110 || | ||| || || || || ||||||| ||| || |||||||| | ||||| || Sbjct 908 GTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGAATTG 967 Query 26111 TTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTA 26170 || | ||| ||||| || || || |||| ||||| || || || ||||| || |||||| Sbjct 968 TTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 1027 Query 26171 TATGTCTCTTCATCTTGCCCAAA 26193 || || ||||| ||||| || || Sbjct 1028 TAAGTTTCTTCTTCTTGACCGAA 1050 >seq31730 Length=297 Score = 152 bits (168), Expect = 2e-32 Identities = 189/259 (73%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320 || ||||||||| ||| || | || ||||| || ||||| || || ||| || ||| Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210 Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380 |||||||| || || || || || || |||||||| | ||| ||||| ||||||||||| Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150 Query 26381 ATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACT 26440 || || |||||||| |||||| |||||| ||||| || | || || | ||||| || Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90 Query 26441 GCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGT 26500 || ||| || | | || |||| |||||||||| ||||| || | ||| || || Sbjct 89 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 30 Query 26501 CTGTAAGATAGTTCCCACT 26519 | | || |||||||||| Sbjct 29 CGGAAACTAAGTTCCCACT 11 >seq34854 Length=328 Score = 141 bits (156), Expect = 3e-29 Identities = 214/299 (72%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 26563 AATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCAGA 26621 ||| || | ||| || ||||| ||||||| ||| || || | | |||| |||||||| | Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCC-GCTTCCCATA 270 Query 26622 TCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATAT 26681 | ||||||||||| | || || || ||| | || | | || || || || |||| Sbjct 269 TTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATAT 210 Query 26682 TGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCG 26741 ||||||| || | || || || ||||| || ||||| || ||||| |||||||| || | Sbjct 209 TGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAG 150 Query 26742 GTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATA 26800 | || || |||||||||| ||||| ||| | ||| || | | |||| || ||||| Sbjct 149 GAGCAGCAATGAAGGCAATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATC 91 Query 26801 AGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859 | || || |||||||| | || |||||||| || || || || | ||| | ||| || Sbjct 90 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32 >seq31523 Length=225 Score = 132 bits (146), Expect = 1e-26 Identities = 144/191 (75%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 26003 AAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATG 26062 || || |||||||||||||| || ||||| |||| |||||| | || || | ||| || Sbjct 224 AAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATA 165 Query 26063 CCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCA 26122 || || || ||||||| ||| || ||||| || | |||||| || || ||||| ||| Sbjct 164 CCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCA 105 Query 26123 TACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCA 26182 || || || || |||| ||||| || || || ||||| || |||||||| || ||||| Sbjct 104 TATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCC 45 Query 26183 TCTTGCCCAAA 26193 ||||| || || Sbjct 44 TCTTGACCGAA 34 >seq85 Length=5226098 Score = 116 bits (128), Expect = 1e-21 Identities = 126/167 (75%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936 |||| ||| || || |||||||||||||||| || ||||||||||| | || |||||| Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246 Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996 || | || | | |||| |||||||| |||| || | | ||| ||||| || Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306 Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043 ||||| || || |||||||||||||| || ||||| |||| |||||| Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353 >seq203 Length=8626763 Score = 96.9 bits (106), Expect = 1e-15 Identities = 145/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 26314 ATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGT 26373 ||| ||||| | ||| || || || || || ||||||||||| | ||| || || |||| Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359 Query 26374 ACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAA 26433 || || || || |||||||| ||||| ||| || ||||| || | || || | || Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419 Query 26434 GAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCAT 26493 ||| || || ||| | | | || |||| ||||||||||| ||||| || | ||| Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479 Query 26494 TCCTAGTCTGTAAGATAGTTCCCACT 26519 ||||| | | || |||||| ||| Sbjct 3756480 ACCTAGACGGAAACTAAGTTCCTACT 3756505 >seq77 Length=8408033 Score = 96.9 bits (106), Expect = 1e-15 Identities = 199/296 (67%), Gaps = 0/296 (0%) Strand=Plus/Minus Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518 || |||| |||||||||| ||||| | | ||| ||||| | || ||||||||| Sbjct 2698990 GGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAAACTAAGTTCCCAC 2698931 Query 26519 TGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGT 26578 | | || || ||||| || | ||||||||| | | ||| || | ||| || Sbjct 2698930 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAATTAGCTCATAAGGA 2698871 Query 26579 CCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGT 26638 ||||| ||||||| ||| || || | || |||||| | || ||||||| ||| | Sbjct 2698870 CCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTACATTGGGTAAATATGCAAA 2698811 Query 26639 CCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAAC 26698 || || || ||| | || | | || || || || ||||||||||| || | || Sbjct 2698810 CCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTGTTTCCATAAAGTAGA 2698751 Query 26699 GAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAA 26754 || | ||||| || | || || ||||| ||||||| || || || || ||||| Sbjct 2698750 GATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGAGGAGCAGCCATGAA 2698695 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 147648193585920