Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_020874.1
Length=46198
Score E
Sequences producing significant alignments: (Bits) Value
seq444 506 6e-139
seq31551 201 3e-47
seq31730 152 2e-32
seq34854 141 3e-29
seq31523 132 1e-26
seq85 116 1e-21
seq203 96.9 1e-15
seq77 96.9 1e-15
>seq444
Length=4271
Score = 506 bits (560), Expect = 6e-139
Identities = 702/983 (71%), Gaps = 0/983 (0%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||| ||||||||||| || ||||||||||| | || ||||||
Sbjct 132 GCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 191
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| ||||| | | ||||||||| ||| || | ||| | | ||| ||||||||
Sbjct 192 GCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATCAACTACTGAT 251
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGC 26056
||||| || || |||||||||||||| || ||||| || | ||||| | || || | |
Sbjct 252 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAAAGCAGTAAAC 311
Query 26057 CATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAA 26116
|| || || || |||||||||| || | |||||||| | |||||| || || |||
Sbjct 312 CAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGAATTGTTGAAA 371
Query 26117 CTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTC 26176
|| ||||| || ||||| |||| ||||| || ||||| ||||| ||||| || || ||
Sbjct 372 CTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAATGTTGTAAGTT 431
Query 26177 TCTTCATCTTGCCCAAACTTATAGCCATAATTCTGTGAGACTTCCTCTGTCGTTTCTGCA 26236
||||| |||||||| || | || || | ||| || | | ||||| |||||
Sbjct 432 TCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGTGGTTTCCCTG 491
Query 26237 ATAAGTGAGGAAGTAACCAAACTTCCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACC 26296
|| | ||||| ||||| || ||||||||| ||||| | || ||||| ||
Sbjct 492 ATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCCGCCGAATACA 551
Query 26297 CCAGCAACACCAGCCATATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACG 26356
||||| ||||| ||| || ||||||||||| || || || || || || ||||||||
Sbjct 552 CCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGCCTGGAATACA 611
Query 26357 AACATAAAGTTAAAAGTACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGT 26416
| ||||||||| |||||||||||||| || |||||||| |||||| |||||| || ||
Sbjct 612 ATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAAACTTCCCTGA 671
Query 26417 CCGAAAGGATAAACTAAGAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACA 26476
|| | ||||| | ||||| || || || || | | || |||| ||||||||||
Sbjct 672 CCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGAATATGCAACA 731
Query 26477 AATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCACTGTCTCCCTGCATATGCT 26536
||||| || | ||| || || | | || |||||||||| | || |||
Sbjct 732 GCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACCCATATAACAA 791
Query 26537 GCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGTCCGCCATTGTATAGCCAC 26596
||||| || | ||| ||||| | | ||| |||| ||| || ||||| |||||||||||
Sbjct 792 GCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTTGTATAGCCAT 851
Query 26597 TCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAG 26656
|| || | | ||||||||||||| ||||||||||| | ||| || || ||| |
Sbjct 852 TCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGCTGCAGAAGTA 911
Query 26657 GGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAACGAGCCGGAAACTGGCTCA 26716
|| | | || || || || |||||||||||||| | | || || ||||| || |||
Sbjct 912 GGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGAAACAGGTTCA 971
Query 26717 CGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAAGGCAAGTATAAAACATGTAGTG 26776
|| || ||||| |||||||| || || || || ||||| || | |||||| | |||
Sbjct 972 CGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAAAACAGAAGTT 1031
Query 26777 GCTGCGAGTAAGCAGGGTATCATAAGCACCCCGAACCATCCCACATAGAGACGGTTCTCA 26836
|| | | |||| || ||||| | || || |||||||| | || |||||||| |||
Sbjct 1032 GCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAGACGGTTTTCA 1091
Query 26837 GTACTTGTAACCCACTCACAAAA 26859
|| || || | ||| | ||| ||
Sbjct 1092 GTGCTAGTTATCCAGTTACAGAA 1114
>seq31551
Length=1713
Score = 201 bits (222), Expect = 3e-47
Identities = 239/323 (74%), Gaps = 6/323 (2%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || ||||||||||||||||| || ||||||||||| | || ||||||
Sbjct 728 GCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATACCAAGGTTA 787
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATT-----ATCTTTCCATTAAC-ATCTACT 25990
|| ||||| | | ||||||||| ||| ||| | |||| | || || ||| |||
Sbjct 788 GCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGACTATCAACT 847
Query 25991 ACTGACTGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGAT 26050
|| || ||||| || || ||||| |||| || ||| ||||| |||| ||||| | ||
Sbjct 848 ACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATACCTAAAGCA 907
Query 26051 GTCAGCCATATGCCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTA 26110
|| | ||| || || || || ||||||| ||| || |||||||| | ||||| ||
Sbjct 908 GTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAACGAGAATTG 967
Query 26111 TTAAAACTCGCATACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTA 26170
|| | ||| ||||| || || || |||| ||||| || || || ||||| || ||||||
Sbjct 968 TTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTA 1027
Query 26171 TATGTCTCTTCATCTTGCCCAAA 26193
|| || ||||| ||||| || ||
Sbjct 1028 TAAGTTTCTTCTTCTTGACCGAA 1050
>seq31730
Length=297
Score = 152 bits (168), Expect = 2e-32
Identities = 189/259 (73%), Gaps = 0/259 (0%)
Strand=Plus/Minus
Query 26261 CCGTGCATAGCAGCGAAAAGAGCTCCACCGAAAACCCCAGCAACACCAGCCATATGGAAT 26320
|| ||||||||| ||| || | || ||||| || ||||| || || ||| || |||
Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210
Query 26321 GGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGTACCAGAG 26380
|||||||| || || || || || || |||||||| | ||| ||||| |||||||||||
Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150
Query 26381 ATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAAGAACACT 26440
|| || |||||||| |||||| |||||| ||||| || | || || | ||||| ||
Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90
Query 26441 GCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGT 26500
|| ||| || | | || |||| |||||||||| ||||| || | ||| || ||
Sbjct 89 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 30
Query 26501 CTGTAAGATAGTTCCCACT 26519
| | || ||||||||||
Sbjct 29 CGGAAACTAAGTTCCCACT 11
>seq34854
Length=328
Score = 141 bits (156), Expect = 3e-29
Identities = 214/299 (72%), Gaps = 4/299 (1%)
Strand=Plus/Minus
Query 26563 AATGAGTTGATATGGTCCGCCATTGTATAGCCACTCGTCCAGTG-TGCCAGCTTCCCAGA 26621
||| || | ||| || ||||| ||||||| ||| || || | | |||| |||||||| |
Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCC-GCTTCCCATA 270
Query 26622 TCGGGTAAAAATGTAGTCCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATAT 26681
| ||||||||||| | || || || ||| | || | | || || || || ||||
Sbjct 269 TTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATAT 210
Query 26682 TGTTTCCGTACATTAACGAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCG 26741
||||||| || | || || || ||||| || ||||| || ||||| |||||||| || |
Sbjct 209 TGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAG 150
Query 26742 GTGCTGCGATGAAGGCAAGTATAAA-ACATGTAGTGGCTGCGAGTAAGCAGGGTATCATA 26800
| || || |||||||||| ||||| ||| | ||| || | | |||| || |||||
Sbjct 149 GAGCAGCAATGAAGGCAATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATC 91
Query 26801 AGCACCCCGAACCATCCCACATAGAGACGGTTCTCAGTACTTGTAACCCACTCACAAAA 26859
| || || |||||||| | || |||||||| || || || || | ||| | ||| ||
Sbjct 90 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32
>seq31523
Length=225
Score = 132 bits (146), Expect = 1e-26
Identities = 144/191 (75%), Gaps = 0/191 (0%)
Strand=Plus/Minus
Query 26003 AAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACCCATAGATGTCAGCCATATG 26062
|| || |||||||||||||| || ||||| |||| |||||| | || || | ||| ||
Sbjct 224 AAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATA 165
Query 26063 CCAACAACCGGCCAAGTAGCAAGAAAGAAATGAAGAGAACGGCTGTTATTAAAACTCGCA 26122
|| || || ||||||| ||| || ||||| || | |||||| || || ||||| |||
Sbjct 164 CCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCA 105
Query 26123 TACTGAAAAATTAATCTCCCAAAGTACCCGTGTGCAGCGACAATATTATATGTCTCTTCA 26182
|| || || || |||| ||||| || || || ||||| || |||||||| || |||||
Sbjct 104 TATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCC 45
Query 26183 TCTTGCCCAAA 26193
||||| || ||
Sbjct 44 TCTTGACCGAA 34
>seq85
Length=5226098
Score = 116 bits (128), Expect = 1e-21
Identities = 126/167 (75%), Gaps = 0/167 (0%)
Strand=Plus/Plus
Query 25877 GCTAAGTCAAGTGGAAAGTTATGAGCATTACGCTCGTGCATAACTTCAAAGCCGAGGTTA 25936
|||| ||| || || |||||||||||||||| || ||||||||||| | || ||||||
Sbjct 1123187 GCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAGGTTA 1123246
Query 25937 GCTCGGTTTAATACATCAGCCCATGTAGGTATTATCTTTCCATTAACATCTACTACTGAC 25996
|| | || | | |||| |||||||| |||| || | | ||| ||||| ||
Sbjct 1123247 GCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTACGGAT 1123306
Query 25997 TGGTTAAAGTTAAAACCATTTAGGTTAAATGCCATTGTGCAGATACC 26043
||||| || || |||||||||||||| || ||||| |||| ||||||
Sbjct 1123307 TGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACC 1123353
>seq203
Length=8626763
Score = 96.9 bits (106), Expect = 1e-15
Identities = 145/206 (70%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 26314 ATGGAATGGGTGCATGAGTATATTATGTTCTGCTTGGAATACGAACATAAAGTTAAAAGT 26373
||| ||||| | ||| || || || || || ||||||||||| | ||| || || ||||
Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359
Query 26374 ACCAGAGATACCAAGAGGCATTCCATCACTAAAACTCCCTTGTCCGAAAGGATAAACTAA 26433
|| || || || |||||||| ||||| ||| || ||||| || | || || | ||
Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419
Query 26434 GAACACTGCGAGAGCTGCGGATAGTGGTGCTGTATATGCAACAAATATCCATGGTCTCAT 26493
||| || || ||| | | | || |||| ||||||||||| ||||| || | |||
Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479
Query 26494 TCCTAGTCTGTAAGATAGTTCCCACT 26519
||||| | | || |||||| |||
Sbjct 3756480 ACCTAGACGGAAACTAAGTTCCTACT 3756505
>seq77
Length=8408033
Score = 96.9 bits (106), Expect = 1e-15
Identities = 199/296 (67%), Gaps = 0/296 (0%)
Strand=Plus/Minus
Query 26459 GGTGCTGTATATGCAACAAATATCCATGGTCTCATTCCTAGTCTGTAAGATAGTTCCCAC 26518
|| |||| |||||||||| ||||| | | ||| ||||| | || |||||||||
Sbjct 2698990 GGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGACGAAAACTAAGTTCCCAC 2698931
Query 26519 TGTCTCCCTGCATATGCTGCTACTCCTATTAAGAAGTGGAAGATAATGAGTTGATATGGT 26578
| | || || ||||| || | ||||||||| | | ||| || | ||| ||
Sbjct 2698930 TCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGTACAATTAGCTCATAAGGA 2698871
Query 26579 CCGCCATTGTATAGCCACTCGTCCAGTGTGCCAGCTTCCCAGATCGGGTAAAAATGTAGT 26638
||||| ||||||| ||| || || | || |||||| | || ||||||| ||| |
Sbjct 2698870 CCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTACATTGGGTAAATATGCAAA 2698811
Query 26639 CCGATTGCGTTAGAGGAGGGGACGACTGCTCCTGATATTATATTGTTTCCGTACATTAAC 26698
|| || || ||| | || | | || || || || ||||||||||| || | ||
Sbjct 2698810 CCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATATTGTTTCCATAAAGTAGA 2698751
Query 26699 GAGCCGGAAACTGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATGAA 26754
|| | ||||| || | || || ||||| ||||||| || || || || |||||
Sbjct 2698750 GATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGAGGAGCAGCCATGAA 2698695
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 147648193585920
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