Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020875.1 Length=182801 Score E Sequences producing significant alignments: (Bits) Value seq444 558 4e-154 seq31551 244 1e-59 seq31730 212 7e-50 seq34854 167 3e-36 seq31523 147 3e-30 seq77 125 8e-24 seq134 114 2e-20 seq85 114 2e-20 seq31544 102 1e-16 >seq444 Length=4271 Score = 558 bits (618), Expect = 4e-154 Identities = 724/998 (73%), Gaps = 12/998 (1%) Strand=Plus/Minus Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029 |||| | ||| ||||| |||| ||||| | || | || ||||| |||||| | | Sbjct 1113 TCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 1054 Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089 |||||||| | | | | || || | || ||| |||| ||||||||||| |||| Sbjct 1053 TGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTC 994 Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149 | ||||| |||||||||||||||||||| || |||| ||| | | || || ||||| | Sbjct 993 CAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATA 934 Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209 | || || ||||| || | |||| ||| || ||||| | || || || || || | Sbjct 933 TTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCT 874 Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269 ||||||| ||| | ||||||| ||| | ||||| || ||||||| |||| | || Sbjct 873 GGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTC 814 Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326 | ||||| | | || | ||| | | | |||||| ||||||||||| || || Sbjct 813 TACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 757 Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386 |||| || |||||||||||||| ||||||||| || || || || | |||||| | Sbjct 756 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 697 Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446 |||| ||| | | ||||| | ||||| || ||| ||||||| |||||||| || | Sbjct 696 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 637 Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506 ||||||||||||| |||| |||| | || ||||| || || ||||| || |||||||||| Sbjct 636 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 577 Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566 | || |||||| | || ||||| ||||| ||||| || || ||||| ||||||||| | Sbjct 576 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 517 Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626 |||| ||||| || ||| | ||| | ||||| || || | || ||| || | | Sbjct 516 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 457 Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686 |||||| ||||| ||||||||||||||||| |||||||| |||||||| || || || | Sbjct 456 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 397 Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746 | || | || ||||| ||||| |||||||| || | | | || |||||| | | Sbjct 396 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 337 Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806 | || ||||| || || | || ||| |||||| | ||| | || ||||| |||| Sbjct 336 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 277 Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCC 155863 |||| || |||||||| |||||||| || ||||| || |||| || || || Sbjct 276 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTA 220 Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923 ||| ||||| || ||| ||||||| ||| |||||||||||||| ||||| || |||| Sbjct 219 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 160 Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961 | ||||||||||||||||| ||||| ||||||| |||| Sbjct 159 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 122 >seq31551 Length=1713 Score = 244 bits (270), Expect = 1e-59 Identities = 314/434 (72%), Gaps = 12/434 (3%) Strand=Plus/Minus Query 155536 TTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGT 155595 ||||| || ||||| ||| ||||||||| ||||| ||||| || ||| | ||| | Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG 1090 Query 155596 GAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT 155655 ||||| || || | || ||| || ||||||| ||||| ||||||||||||||| Sbjct 1089 GAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAACT 1030 Query 155656 TATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTC 155715 ||||| || || ||||||||||| || || || || | |||||||| ||||| || Sbjct 1029 TATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGTC 970 Query 155716 AACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCA 155775 ||||| || | | || |||||||| ||||| |||||||| || | |||||| Sbjct 969 AACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 910 Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835 |||||| | ||| | || ||||| || || | ||||||||||| |||||||| ||| Sbjct 909 ACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATCT 850 Query 155836 GTAGTAGACGCTAGT---------GGTAAAGTCATCCCTACATGGGCAGACATTCTTAAC 155886 ||||| || |||| ||| | || || ||| ||||| || | ||||| Sbjct 849 GTAGTTGA---TAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAAC 793 Query 155887 CGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946 || ||| |||||||||||||| ||||| || ||||| ||||| |||||||| || ||| Sbjct 792 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGAC 733 Query 155947 CTTGCTGCTGCTGA 155960 || ||||||| ||| Sbjct 732 CTAGCTGCTGTTGA 719 >seq31730 Length=297 Score = 212 bits (234), Expect = 7e-50 Identities = 216/282 (77%), Gaps = 0/282 (0%) Strand=Plus/Plus Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361 |||||| ||||||||||| || |||||| || ||||| |||||||| ||||||||| Sbjct 4 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 63 Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421 || || || || | ||||| ||||| ||| | | || || | |||||||| | Sbjct 64 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGT 123 Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481 || ||||||| |||||||| || || ||||||||||| |||| ||| | || ||||| Sbjct 124 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 183 Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541 || || ||||| |||||||||||||| || |||||| | || ||||| ||||| ||||| Sbjct 184 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 243 Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583 || || || ||| ||||||||| ||||| ||||| || ||| Sbjct 244 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 285 >seq34854 Length=328 Score = 167 bits (184), Expect = 3e-36 Identities = 194/262 (74%), Gaps = 0/262 (0%) Strand=Plus/Plus Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052 || ||||| | || | || ||||| |||||| | ||||||||| | | | | || Sbjct 56 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCA 115 Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112 || | || ||| | |||||||||||||| ||||| ||||| ||||||||||||||| Sbjct 116 ACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 175 Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172 ||||| || |||| ||| || | ||||| ||||| || ||||| ||||| || | ||| Sbjct 176 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCGGGTGCCATTATTCCT 235 Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232 | ||| || || ||| | || || || || || |||||||| ||| || ||||||| Sbjct 236 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAA 295 Query 155233 TGGTTGTACAATGGTGGTCCTT 155254 ||||| ||||| || ||||||| Sbjct 296 TGGTTATACAACGGCGGTCCTT 317 >seq31523 Length=225 Score = 147 bits (162), Expect = 3e-30 Identities = 153/201 (76%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685 ||||||| ||||| ||||| |||||||||||||| || || ||||||||||| || || Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84 Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 155745 || || | |||||||| ||||| |||||||| || | | | ||||||||||| Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144 Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805 ||||| |||||||| || | |||||| |||||| | ||| | || ||||| ||| Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204 Query 155806 AACCTTAACGGTTTCAACTTC 155826 ||||| || |||||||| ||| Sbjct 205 AACCTAAATGGTTTCAATTTC 225 >seq77 Length=8408033 Score = 125 bits (138), Expect = 8e-24 Identities = 207/299 (69%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 155074 TTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTA 155133 ||||| ||||| ||||| |||| |||||||||||||| |||| | | | ||| || Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754 Query 155134 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTC 155193 | ||||| ||||| || ||||| ||||| || | || | ||| || || ||| | Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814 Query 155194 CACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCT 155253 || | || || || | ||||||| || | ||||||| ||||| ||||| || |||||| Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874 Query 155254 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 155313 | | || | || | |||||| | | || | | ||| |||||| ||||| Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934 Query 155314 GAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGT 155372 |||||| || ||||| || ||| | ||||||| ||||||||| || || || || Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGT 2698993 >seq134 Length=15115857 Score = 114 bits (126), Expect = 2e-20 Identities = 172/243 (71%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 155014 TGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCT--GCTGCTACATGCTTCATTGTCG 155071 ||||| |||||| | ||||||||| | | | || ||| ||| || | ||| | | Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTCAGCTTCTATAT---TTATTATTG 3765942 Query 155072 CCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTT 155131 ||||||||| ||| ||||| || || ||||||||||| || | || | |||| ||| Sbjct 3765941 CCTTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTC 3765882 Query 155132 TAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTC 155191 || | ||||||||||| || || | || || || | |||| | | | | || ||| Sbjct 3765881 TACTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTT 3765822 Query 155192 TCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTC 155251 | || || || | || |||||||||||| || ||||||| ||||| ||||| | ||| Sbjct 3765821 TGCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTC 3765762 Query 155252 CTT 155254 ||| Sbjct 3765761 CTT 3765759 >seq85 Length=5226098 Score = 114 bits (126), Expect = 2e-20 Identities = 125/165 (76%), Gaps = 6/165 (4%) Strand=Plus/Minus Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT--- 155850 || ||||| |||||||| || |||||||| |||||||| || ||||| || |||| Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA---TAGTCAA 1123288 Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910 ||| || || |||||||| || ||| |||| | ||| |||||||||||||| Sbjct 1123287 GGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTT 1123228 Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955 ||||| || |||| ||||| ||||||||||| ||||| ||| || Sbjct 1123227 ATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTACT 1123183 >seq31544 Length=164 Score = 102 bits (112), Expect = 1e-16 Identities = 80/96 (83%), Gaps = 0/96 (0%) Strand=Plus/Plus Query 155865 TACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAA 155924 ||| ||||| || ||| |||| || ||| ||||||||||||||| ||||| || ||||| Sbjct 37 TACCTGGGCTGATATTATTAATCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 96 Query 155925 CGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960 ||||| ||||||||||| ||||| ||||||| ||| Sbjct 97 TGCTCATAACTTCCCTCTAGACCTAGCTGCTGTTGA 132 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 584569275434560