Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_020875.1
Length=182801
Score E
Sequences producing significant alignments: (Bits) Value
seq444 558 4e-154
seq31551 244 1e-59
seq31730 212 7e-50
seq34854 167 3e-36
seq31523 147 3e-30
seq77 125 8e-24
seq134 114 2e-20
seq85 114 2e-20
seq31544 102 1e-16
>seq444
Length=4271
Score = 558 bits (618), Expect = 4e-154
Identities = 724/998 (73%), Gaps = 12/998 (1%)
Strand=Plus/Minus
Query 154970 TCTGCCAGTGGGTAACTTCTGCTGACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTA 155029
|||| | ||| ||||| |||| ||||| | || | || ||||| |||||| | |
Sbjct 1113 TCTGTAACTGGATAACTAGCACTGAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGA 1054
Query 155030 TGATCCCTTGCCTCCTCGCTGCTGCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTC 155089
|||||||| | | | | || || | || ||| |||| ||||||||||| ||||
Sbjct 1053 TGATCCCTACCTTATTGACCGCAACTTCTGTTTTTATTATCGCATTCATTGCTGCTCCTC 994
Query 155090 CTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACA 155149
| ||||| |||||||||||||||||||| || |||| ||| | | || || ||||| |
Sbjct 993 CAGTAGATATTGATGGTATTCGTGAACCTGTTTCTGGATCTCTTCTTTACGGAAACAATA 934
Query 155150 TCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTT 155209
| || || ||||| || | |||| ||| || ||||| | || || || || || |
Sbjct 933 TTATTTCCGGTGCCATTATTCCTACTTCTGCAGCTATTGGATTGCATTTTTACCCAATCT 874
Query 155210 GGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCTTTCCAACTTGTAGTCT 155269
||||||| ||| | ||||||| ||| | ||||| || ||||||| |||| | ||
Sbjct 873 GGGAAGCTGCATCCGTTGATGAATGGCTATACAACGGCGGTCCTTATGAACTAATTGTTC 814
Query 155270 TCCACTTCCTTATCGGAATCACAGCATACTGT---GGTCGTCAGTGGGAACTTTCTTACC 155326
| ||||| | | || | ||| | | | |||||| ||||||||||| || ||
Sbjct 813 TACACTTTTTACTTGGTGT---AGCTTGTTATATGGGTCGTGAGTGGGAACTTAGTTTCC 757
Query 155327 GTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGTATCTGCTGCGTTCG 155386
|||| || |||||||||||||| ||||||||| || || || || | |||||| |
Sbjct 756 GTCTGGGTATGCGTCCTTGGATTGCTGTTGCATATTCAGCTCCTGTTGCAGCTGCGACTG 697
Query 155387 CTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCTTTCTCTGATGCGATGCCTCTTGGTA 155446
|||| ||| | | ||||| | ||||| || ||| ||||||| |||||||| || |
Sbjct 696 CTGTTTTCTTGATCTATCCAATTGGTCAGGGAAGTTTTTCTGATGGTATGCCTCTAGGAA 637
Query 155447 TCTCTGGTACTTTTAACTATATGTTCGTGTTCCAAGCAGAACACAATATCCTTATGCACC 155506
||||||||||||| |||| |||| | || ||||| || || ||||| || ||||||||||
Sbjct 636 TCTCTGGTACTTTCAACTTTATGATTGTATTCCAGGCTGAGCACAACATTCTTATGCACC 577
Query 155507 CCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGTGGATCTCTTTTCTCTGCTATGCACG 155566
| || |||||| | || ||||| ||||| ||||| || || ||||| ||||||||| |
Sbjct 576 CATTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCCCTTTTTAGTGCTATGCATG 517
Query 155567 GTTCATTGGTGACATCTTCACTAATCCGTGAAACTACTGAGCAAGAGTCTCAGAACTATG 155626
|||| ||||| || ||| | ||| | ||||| || || | || ||| || | |
Sbjct 516 GTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACCACAGAAAATGAATCTGCTAATGAAG 457
Query 155627 GTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTCG 155686
|||||| ||||| ||||||||||||||||| |||||||| |||||||| || || || |
Sbjct 456 GTTACAGATTCGGGCAAGAAGAAGAAACTTACAACATTGTAGCTGCTCACGGTTATTTTG 397
Query 155687 GTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 155746
| || | || ||||| ||||| |||||||| || | | | || |||||| | |
Sbjct 396 GCCGATTGATTTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACATTTCTTCTTAG 337
Query 155747 CTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTCA 155806
| || ||||| || || | || ||| |||||| | ||| | || ||||| ||||
Sbjct 336 CGGCTTGGCCGGTAGTAGGTATTTGGTTTACTGCTTTAGGTATTAGTACTATGGCTTTCA 277
Query 155807 ACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT---GGTAAAGTCATCC 155863
|||| || |||||||| |||||||| || ||||| || |||| || || ||
Sbjct 276 ACCTAAATGGTTTCAATTTCAACCAATCAGTAGTTGA---TAGTCAAGGACGTGTTATTA 220
Query 155864 CTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTA 155923
||| ||||| || ||| ||||||| ||| |||||||||||||| ||||| || ||||
Sbjct 219 ATACTTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTA 160
Query 155924 ACGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGAG 155961
| ||||||||||||||||| ||||| ||||||| ||||
Sbjct 159 ATGCTCACAACTTCCCTCTAGACCTAGCTGCTGTTGAG 122
>seq31551
Length=1713
Score = 244 bits (270), Expect = 1e-59
Identities = 314/434 (72%), Gaps = 12/434 (3%)
Strand=Plus/Minus
Query 155536 TTCGGTGGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCTTCACTAATCCGT 155595
||||| || ||||| ||| ||||||||| ||||| ||||| || ||| | ||| |
Sbjct 1149 TTCGGCGGCTCTCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCTAGTTTGATCAGG 1090
Query 155596 GAAACTACTGAGCAAGAGTCTCAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAAACT 155655
||||| || || | || ||| || ||||||| ||||| |||||||||||||||
Sbjct 1089 GAAACCACAGAAAATGAATCTGCTAATGTAGGTTACAGATTCGGTCAAGAAGAAGAAACT 1030
Query 155656 TATAACATTGTTGCTGCTCATGGATACTTCGGTCGTCTTATCTTCCAGTATGCATCCTTC 155715
||||| || || ||||||||||| || || || || | |||||||| ||||| ||
Sbjct 1029 TATAATATCGTAGCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATATGCTAGTGTC 970
Query 155716 AACAACTCAAGAAGTCTTCACTTCTTCCTTGCTGCATGGCCTGTGGTCTGCATCTGGGCA 155775
||||| || | | || |||||||| ||||| |||||||| || | ||||||
Sbjct 969 AACAATTCTCGTTCCTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTC 910
Query 155776 ACTGCTATGGGTGTGTCAACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCT 155835
|||||| | ||| | || ||||| || || | ||||||||||| |||||||| |||
Sbjct 909 ACTGCTTTAGGTATTAGCACCATGGCTTTTCACTTAAACGGTTTCAATTTCAACCAATCT 850
Query 155836 GTAGTAGACGCTAGT---------GGTAAAGTCATCCCTACATGGGCAGACATTCTTAAC 155886
||||| || |||| ||| | || || ||| ||||| || | |||||
Sbjct 849 GTAGTTGA---TAGTCAAGGAAAAGGTCATGTAATTAATACCTGGGCTGATCTCATTAAC 793
Query 155887 CGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAACGCTCACAACTTCCCTCTTGAC 155946
|| ||| |||||||||||||| ||||| || ||||| ||||| |||||||| || |||
Sbjct 792 CGTGCTAACCTTGGTATGGAAGTTATGCATGAACGTAATGCTCATAACTTCCCCCTAGAC 733
Query 155947 CTTGCTGCTGCTGA 155960
|| ||||||| |||
Sbjct 732 CTAGCTGCTGTTGA 719
>seq31730
Length=297
Score = 212 bits (234), Expect = 7e-50
Identities = 216/282 (77%), Gaps = 0/282 (0%)
Strand=Plus/Plus
Query 155302 GGTCGTCAGTGGGAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATAC 155361
|||||| ||||||||||| || |||||| || ||||| |||||||| |||||||||
Sbjct 4 GGTCGTGAGTGGGAACTTAGTTTCCGTCTGGGTATGCGCCCTTGGATTGCTGTTGCATAT 63
Query 155362 TCTGCACCAGTATCTGCTGCGTTCGCTGTATTCCTTGTTTATCCTTTCGGTCAAGGTTCT 155421
|| || || || | ||||| ||||| ||| | | || || | |||||||| |
Sbjct 64 TCAGCTCCTGTTGCAGCTGCTACTGCTGTTTTCTTGATCTACCCAATTGGTCAAGGAAGT 123
Query 155422 TTCTCTGATGCGATGCCTCTTGGTATCTCTGGTACTTTTAACTATATGTTCGTGTTCCAA 155481
|| ||||||| |||||||| || || ||||||||||| |||| ||| | || |||||
Sbjct 124 TTTTCTGATGGTATGCCTCTAGGAATTTCTGGTACTTTCAACTTCATGATTGTATTCCAG 183
Query 155482 GCAGAACACAATATCCTTATGCACCCCTTCCACATGCTTGGAGTAGCAGGTGTGTTCGGT 155541
|| || ||||| |||||||||||||| || |||||| | || ||||| ||||| |||||
Sbjct 184 GCTGAGCACAACATCCTTATGCACCCATTTCACATGTTAGGCGTAGCTGGTGTATTCGGC 243
Query 155542 GGATCTCTTTTCTCTGCTATGCACGGTTCATTGGTGACATCT 155583
|| || || ||| ||||||||| ||||| ||||| || |||
Sbjct 244 GGCTCCCTATTCAGTGCTATGCATGGTTCCTTGGTAACCTCT 285
>seq34854
Length=328
Score = 167 bits (184), Expect = 3e-36
Identities = 194/262 (74%), Gaps = 0/262 (0%)
Strand=Plus/Plus
Query 154993 GACAACCGCATCTATGTCGGTTGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCTGCT 155052
|| ||||| | || | || ||||| |||||| | ||||||||| | | | | ||
Sbjct 56 GAAAACCGTCTTTACATTGGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCA 115
Query 155053 GCTACATGCTTCATTGTCGCCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGT 155112
|| | || ||| | |||||||||||||| ||||| ||||| |||||||||||||||
Sbjct 116 ACTTCTGTATTTATTATTGCCTTCATTGCTGCTCCTCCAGTAGATATTGATGGTATTCGT 175
Query 155113 GAACCCGTCGCTGGTTCTTTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCT 155172
||||| || |||| ||| || | ||||| ||||| || ||||| ||||| || | |||
Sbjct 176 GAACCTGTTTCTGGATCTCTACTTTATGGAAACAATATTATCTCGGGTGCCATTATTCCT 235
Query 155173 AGTTCAAACGCAATTGGTCTCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAG 155232
| ||| || || ||| | || || || || || |||||||| ||| || |||||||
Sbjct 236 ACTTCTGCAGCTATAGGTTTGCATTTTTACCCAATATGGGAAGCGGCATCTGTTGATGAA 295
Query 155233 TGGTTGTACAATGGTGGTCCTT 155254
||||| ||||| || |||||||
Sbjct 296 TGGTTATACAACGGCGGTCCTT 317
>seq31523
Length=225
Score = 147 bits (162), Expect = 3e-30
Identities = 153/201 (76%), Gaps = 0/201 (0%)
Strand=Plus/Plus
Query 155626 GGTTACAAGTTCGGACAAGAAGAAGAAACTTATAACATTGTTGCTGCTCATGGATACTTC 155685
||||||| ||||| ||||| |||||||||||||| || || ||||||||||| || ||
Sbjct 25 GGTTACAGATTCGGTCAAGAGGAAGAAACTTATAATATCGTAGCTGCTCATGGTTATTTT 84
Query 155686 GGTCGTCTTATCTTCCAGTATGCATCCTTCAACAACTCAAGAAGTCTTCACTTCTTCCTT 155745
|| || | |||||||| ||||| |||||||| || | | | |||||||||||
Sbjct 85 GGCCGATTGATCTTCCAATATGCTAGTTTCAACAATTCTCGTTCTTTACACTTCTTCCTA 144
Query 155746 GCTGCATGGCCTGTGGTCTGCATCTGGGCAACTGCTATGGGTGTGTCAACGATGGCATTC 155805
||||| |||||||| || | |||||| |||||| | ||| | || ||||| |||
Sbjct 145 GCTGCTTGGCCTGTAGTAGGTATCTGGTTCACTGCTTTAGGTATCAGCACTATGGCTTTC 204
Query 155806 AACCTTAACGGTTTCAACTTC 155826
||||| || |||||||| |||
Sbjct 205 AACCTAAATGGTTTCAATTTC 225
>seq77
Length=8408033
Score = 125 bits (138), Expect = 8e-24
Identities = 207/299 (69%), Gaps = 0/299 (0%)
Strand=Plus/Plus
Query 155074 TTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTTTA 155133
||||| ||||| ||||| |||| |||||||||||||| |||| | | | ||| ||
Sbjct 2698695 TTCATGGCTGCTCCTCCAATAGATATTGATGGTATTCGCAAACCTATTTCCAGATCTCTA 2698754
Query 155134 ATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTCTC 155193
| ||||| ||||| || ||||| ||||| || | || | ||| || || ||| |
Sbjct 2698755 CTTTATGGAAACAATATTATCTCCGGTGCCATTATTCCAACTTCTTCAGCTATAGGTTTG 2698814
Query 155194 CACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTCCT 155253
|| | || || || | ||||||| || | ||||||| ||||| ||||| || ||||||
Sbjct 2698815 CATATTTACCCAATGTAGGAAGCATCATCAGTTGATGAATGGTTATACAACGGCGGTCCT 2698874
Query 155254 TTCCAACTTGTAGTCTTCCACTTCCTTATCGGAATCACAGCATACTGTGGTCGTCAGTGG 155313
| | || | || | |||||| | | || | | ||| |||||| |||||
Sbjct 2698875 TATGAGCTAATTGTACTACACTTCTTACTTGGTGTAGCTTGTTACATGGGTCGTGAGTGG 2698934
Query 155314 GAACTTTCTTACCGTCTTGGCATGCGTCCTTGGATCTGTGTTGCATACTCTGCACCAGT 155372
|||||| || ||||| || ||| | ||||||| ||||||||| || || || ||
Sbjct 2698935 GAACTTAGTTTTCGTCTAGGTATGTGCTCTTGGATTGCTGTTGCATATTCAGCTCCTGT 2698993
>seq134
Length=15115857
Score = 114 bits (126), Expect = 2e-20
Identities = 172/243 (71%), Gaps = 5/243 (2%)
Strand=Plus/Minus
Query 155014 TGGTTCGGTGTTCTTATGATCCCTTGCCTCCTCGCT--GCTGCTACATGCTTCATTGTCG 155071
||||| |||||| | ||||||||| | | | || ||| ||| || | ||| | |
Sbjct 3765998 TGGTTTGGTGTTTTGATGATCCCTACCTTATTGACTCAGCTTCTATAT---TTATTATTG 3765942
Query 155072 CCTTCATTGCTGCACCTCCTGTAGACATTGATGGTATTCGTGAACCCGTCGCTGGTTCTT 155131
||||||||| ||| ||||| || || ||||||||||| || | || | |||| |||
Sbjct 3765941 CCTTCATTGTTGCTCCTCCAGTTGATATTGATGGTATCTGTAAGCCTATTTCTGGATCTC 3765882
Query 155132 TAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCTAGTTCAAACGCAATTGGTC 155191
|| | ||||||||||| || || | || || || | |||| | | | | || |||
Sbjct 3765881 TACTTTATGGTAACAATATTATTTATGATGGCATTATTCCTACTCCTACAACTATAGGTT 3765822
Query 155192 TCCACTTCTATCCTATTTGGGAAGCAGCAACTCTTGATGAGTGGTTGTACAATGGTGGTC 155251
| || || || | || |||||||||||| || ||||||| ||||| ||||| | |||
Sbjct 3765821 TGCATTTTTACTCAATATGGGAAGCAGCATCTGTTGATGAATGGTTATACAACGACAGTC 3765762
Query 155252 CTT 155254
|||
Sbjct 3765761 CTT 3765759
>seq85
Length=5226098
Score = 114 bits (126), Expect = 2e-20
Identities = 125/165 (76%), Gaps = 6/165 (4%)
Strand=Plus/Minus
Query 155794 ACGATGGCATTCAACCTTAACGGTTTCAACTTCAACCAGTCTGTAGTAGACGCTAGT--- 155850
|| ||||| |||||||| || |||||||| |||||||| || ||||| || ||||
Sbjct 1123344 ACTATGGCTTTCAACCTAAATGGTTTCAATTTCAACCAATCCGTAGTTGA---TAGTCAA 1123288
Query 155851 GGTAAAGTCATCCCTACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTA 155910
||| || || |||||||| || ||| |||| | ||| ||||||||||||||
Sbjct 1123287 GGTCGTGTAATTAATACATGGGTTGATATTATTAATTGTGCTAACCTTGGTATGGAAGTT 1123228
Query 155911 ATGCACGAGCGTAACGCTCACAACTTCCCTCTTGACCTTGCTGCT 155955
||||| || |||| ||||| ||||||||||| ||||| ||| ||
Sbjct 1123227 ATGCATGAATGTAATGCTCATAACTTCCCTCTAGACCTAGCTACT 1123183
>seq31544
Length=164
Score = 102 bits (112), Expect = 1e-16
Identities = 80/96 (83%), Gaps = 0/96 (0%)
Strand=Plus/Plus
Query 155865 TACATGGGCAGACATTCTTAACCGCGCTGGTCTTGGTATGGAAGTAATGCACGAGCGTAA 155924
||| ||||| || ||| |||| || ||| ||||||||||||||| ||||| || |||||
Sbjct 37 TACCTGGGCTGATATTATTAATCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAA 96
Query 155925 CGCTCACAACTTCCCTCTTGACCTTGCTGCTGCTGA 155960
||||| ||||||||||| ||||| ||||||| |||
Sbjct 97 TGCTCATAACTTCCCTCTAGACCTAGCTGCTGTTGA 132
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 584569275434560
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