Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_020878.1 Length=44945 Score E Sequences producing significant alignments: (Bits) Value seq444 556 4e-154 seq31551 174 5e-39 seq34854 165 2e-36 seq31730 161 3e-35 seq77 120 9e-23 seq31523 116 1e-21 seq85 107 6e-19 seq31544 86.0 2e-12 seq151 86.0 2e-12 seq134 84.2 6e-12 >seq444 Length=4271 Score = 556 bits (616), Expect = 4e-154 Identities = 719/993 (72%), Gaps = 0/993 (0%) Strand=Plus/Plus Query 40523 CTCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCAT 40582 |||| ||| ||||| ||||||||| ||||||||||| ||||| || ||||| |||||||| Sbjct 122 CTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTCCAT 181 Query 40583 ACCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTC 40642 ||| || | | ||||| || ||||||||||||| ||| || || | | || Sbjct 182 ACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAACACGTCCTTGACTATC 241 Query 40643 TACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCAT 40702 |||||||| ||||| || || |||||||| ||||| |||||||||||| ||||| | Sbjct 242 AACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAATACCTAA 301 Query 40703 GGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCT 40762 | |||| ||| || || | ||||| |||| | | ||||| |||| | ||| Sbjct 302 AGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGAACGAGA 361 Query 40763 ATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGAT 40822 ||||||||| ||||||||| || || | || ||||| |||||||| |||||||| || Sbjct 362 ATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGCTACAAT 421 Query 40823 GTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 ||| ||||| || |||| || || || | || || | || |||||| |||| || Sbjct 422 GTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 481 Query 40883 GGTCTCCCGAATGATTGAGGAAGTAACAAGGCTTCCGTGCATAGCAGCAAACAAAGCACC 40942 ||| |||| || | ||||| || | | || ||||||||| ||| | | || Sbjct 482 GGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAGGGAGCC 541 Query 40943 ACCAAAGACGCCTGCAACGCCGAGCATATGGAATGGGTGCATGAGAATGTTGTGTTCTGC 41002 || || || || || || || | ||| || ||||||||||| ||||||||||| || || Sbjct 542 GCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTGCTCAGC 601 Query 41003 TTGGAAGACAAACATGAAGTTGAATGTTCCACTGATTCCTAAAGGCATACCATCAGAGAA 41062 ||||| |||| ||| |||||||| || ||| |||||||| ||||||||||||||| || Sbjct 602 CTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATCAGAAAA 661 Query 41063 AGAACCCTGACCGAATGGATAAACTAAGAATACAGCTAGAGCTGCTGACAATGGAGCTGT 41122 | |||||||| | |||||| | ||||| ||||| || |||| | ||||||| Sbjct 662 ACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGGAGCTGA 721 Query 41123 GTATGCCACAAATATCCATGGTCTCATACCTAGTCTGTATGAAAGTTCCCACTGTCTACC 41182 ||||| ||| ||||| || | |||||| || | | | ||||||||||| | ||| Sbjct 722 ATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 781 Query 41183 AGCGTATGCTGCTACTCCTATTAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTT 41242 || ||||| || | ||||||||| | ||||| |||| ||| || |||||||| Sbjct 782 CATATAACAAGCTACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGGACCGCCGTT 841 Query 41243 GTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGC 41302 ||||||||| || || | | | ||||||||||||||||| ||||| | ||| || || Sbjct 842 GTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAATCCAATAGC 901 Query 41303 GTTAGAGCTCGGAACGACAGCTCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGA 41362 ||| | |||| | || || || ||||||||||| ||||| | | || || || Sbjct 902 TGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAGAGATCCAGA 961 Query 41363 AACGGGCTCACGTATGCCATCTATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAA 41422 ||| || ||||| || ||||| |||||||| || || || || || || ||||| || || Sbjct 962 AACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGCGATAATAAA 1021 Query 41423 ACATGTGGTAGCAGTTAGTAATGCTGGAATCATTAGCACACCAAACCAACCTACGTATAG 41482 | | || || || | ||| | || ||||| | ||||||||||| || | ||| || Sbjct 1022 AACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCCAATGTAAAG 1081 Query 41483 GCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 ||||| || |||||||| | ||||||||| || Sbjct 1082 ACGGTTTTCAGTGCTAGTTATCCAGTTACAGAA 1114 >seq31551 Length=1713 Score = 174 bits (192), Expect = 5e-39 Identities = 262/373 (70%), Gaps = 6/373 (2%) Strand=Plus/Plus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| |||||| || ||||| ||||| ||||| || ||||| ||||||||| Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGT-- 40641 || || | | ||||| | ||||||||| ||| ||| || | ||| || | | Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838 Query 40642 ----CTACTACTGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATA 40697 | ||||| || ||||| || || ||||| || | || ||||||||| || ||| Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898 Query 40698 CCCATGGAGGTAAGCCATATGCCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCA 40757 || | | || | ||| || || | || || ||||| | || ||||| |||| | | Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958 Query 40758 CGGCTATTGTTGAATGAAGCATATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCT 40817 || |||||||| ||||||||| || || | || ||||| ||||| || |||||| Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018 Query 40818 ACGATGTTATAAGTCTCGCCTTCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTT 40877 ||||| |||||||| || |||| ||||| || | || || || |||||| || Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTACATTAGCAGATTCATTT 1078 Query 40878 TCCGTGGTCTCCC 40890 || ||||| |||| Sbjct 1079 TCTGTGGTTTCCC 1091 >seq34854 Length=328 Score = 165 bits (182), Expect = 2e-36 Identities = 219/299 (73%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 41219 AATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTG-TGCCGGCTTCCCAGA 41277 ||| || | ||| || ||||||||||||| ||| || || | | ||||| ||||||| | Sbjct 328 AATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACAGATGCCG-CTTCCCATA 270 Query 41278 TTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATAT 41337 ||||||| ||||| | || || || ||| | |||| | || || || ||||||| Sbjct 269 TTGGGTAAAAATGCAAACCTATAGCTGCAGAAGTAGGAATAATGGCACCCGAGATAATAT 210 Query 41338 TGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGCG 41397 |||| || || | || || || ||||| || ||||| || ||||| |||||||| || | Sbjct 209 TGTTTCCATAAAGTAGAGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAG 150 Query 41398 GTGCTGCGATAAAGGCGATTATGAA-ACATGTGGTAGCAGTTAGTAATGCTGGAATCATT 41456 | || || || ||||| || || || ||| | || || || | ||| | || ||||| Sbjct 149 GAGCAGCAATGAAGGCAATAATAAATACA-GAAGTTGCGGTCAATAAGGTAGGGATCATC 91 Query 41457 AGCACACCAAACCAACCTACGTATAGGCGGTTGTCGGTGCTAGTGACCCAGTTACAAAA 41515 | ||||||||||| || | ||| || ||||| |||||||| || | ||||||||| || Sbjct 90 AAAACACCAAACCATCCAATGTAAAGACGGTTTTCGGTGCTGGTTATCCAGTTACAGAA 32 >seq31730 Length=297 Score = 161 bits (178), Expect = 3e-35 Identities = 191/259 (74%), Gaps = 0/259 (0%) Strand=Plus/Minus Query 40917 CCGTGCATAGCAGCAAACAAAGCACCACCAAAGACGCCTGCAACGCCGAGCATATGGAAT 40976 || ||||||||| || | | || || || || || || ||||| | ||| || ||| Sbjct 269 CCATGCATAGCACTGAATAGGGAGCCGCCGAATACACCAGCTACGCCTAACATGTGAAAT 210 Query 40977 GGGTGCATGAGAATGTTGTGTTCTGCTTGGAAGACAAACATGAAGTTGAATGTTCCACTG 41036 |||||||| || |||||||| || || ||||| |||| |||||||||||| || ||| Sbjct 209 GGGTGCATAAGGATGTTGTGCTCAGCCTGGAATACAATCATGAAGTTGAAAGTACCAGAA 150 Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||||||| ||||||||||||||| ||| || ||||| | ||| || | ||||| ||| Sbjct 149 ATTCCTAGAGGCATACCATCAGAAAAACTTCCTTGACCAATTGGGTAGATCAAGAAAACA 90 Query 41097 GCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGT 41156 || ||| |||| | ||||||| ||||| ||| ||||| || | |||||| || Sbjct 89 GCAGTAGCAGCTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGGGCGCATACCCAGA 30 Query 41157 CTGTATGAAAGTTCCCACT 41175 | | | ||||||||||| Sbjct 29 CGGAAACTAAGTTCCCACT 11 >seq77 Length=8408033 Score = 120 bits (132), Expect = 9e-23 Identities = 251/374 (67%), Gaps = 0/374 (0%) Strand=Plus/Minus Query 41037 ATTCCTAAAGGCATACCATCAGAGAAAGAACCCTGACCGAATGGATAAACTAAGAATACA 41096 ||| ||| |||||||| |||| | ||| ||||| | ||| || | ||||| ||| Sbjct 2699068 ATTTCTAGAGGCATACAATCATAAAAACTTATGTGACCAATTGGGTAGATCAAGAAAACA 2699009 Query 41097 GCTAGAGCTGCTGACAATGGAGCTGTGTATGCCACAAATATCCATGGTCTCATACCTAGT 41156 | ||| || | ||||||| ||||| ||| ||||| | | ||||||||| Sbjct 2699008 ATAATAGCAATTGCAACAGGAGCTGAATATGCAACAGCAATCCAAGAGCACATACCTAGA 2698949 Query 41157 CTGTATGAAAGTTCCCACTGTCTACCAGCGTATGCTGCTACTCCTATTAAAAAGTGAAAG 41216 | | ||||||||||| | ||| ||| ||||| || | ||| ||||| | Sbjct 2698948 CGAAAACTAAGTTCCCACTCACGACCCATGTAACAAGCTACACCAAGTAAGAAGTGTAGT 2698889 Query 41217 ACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGTGCCGGCTTCCCAG 41276 ||||| || | ||| || ||||||||||||| ||| || || | || |||||| | Sbjct 2698888 ACAATTAGCTCATAAGGACCGCCGTTGTATAACCATTCATCAACTGATGATGCTTCCTAC 2698829 Query 41277 ATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGCTCCAGATATAATA 41336 |||||||| | ||| | || || || ||| | |||| | || || || |||||| Sbjct 2698828 ATTGGGTAAATATGCAAACCTATAGCTGAAGAAGTTGGAATAATGGCACCGGAGATAATA 2698769 Query 41337 TTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATCTATATCTACAGGC 41396 ||||| || || | || || | ||||| || | || || ||||| ||||||| || Sbjct 2698768 TTGTTTCCATAAAGTAGAGATCTGGAAATAGGTTTGCGAATACCATCAATATCTATTGGA 2698709 Query 41397 GGTGCTGCGATAAA 41410 || || || || || Sbjct 2698708 GGAGCAGCCATGAA 2698695 >seq31523 Length=225 Score = 116 bits (128), Expect = 1e-21 Identities = 160/224 (71%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 40659 AAGTTAAAACCATTGAGGTTAAAAGCCATAGTAGATATACCCATGGAGGTAAGCCATATG 40718 || || |||||||| ||||| ||||||||||| ||||| | | || | ||| || Sbjct 224 AAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGATA 165 Query 40719 CCAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCA 40778 || | || || ||||| | || |||||||||| | ||| ||||||||| |||| Sbjct 164 CCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGCA 105 Query 40779 TATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTCGCCT 40838 ||||| || || | || ||||| ||||| || ||||||||||| |||||||| || | Sbjct 104 TATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTCC 45 Query 40839 TCCTGACCAAACTTATACCCGTAGTTCTGTGATTCAGTTTCCGT 40882 || ||||| || | || || | || |||||| |||| || Sbjct 44 TCTTGACCGAATCTGTAACCTTCATTAGCAGATTCATTTTCTGT 1 >seq85 Length=5226098 Score = 107 bits (118), Expect = 6e-19 Identities = 121/162 (75%), Gaps = 0/162 (0%) Strand=Plus/Plus Query 40529 AGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATACCTAG 40588 || ||||| ||||||||| ||||| ||||| |||| || ||||| ||||||||||| || Sbjct 1123183 AGTAGCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAG 1123242 Query 40589 ACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCTACTAC 40648 | | |||| || |||| |||| ||| ||| || ||| | | || ||||| Sbjct 1123243 GTTAGCACAATTAATAATATCAACCCATGTATTAATTACACGACCTTGACTATCAACTAC 1123302 Query 40649 TGACTGGTTAAAGTTAAAACCATTGAGGTTAAAAGCCATAGT 40690 || ||||| || || |||||||| ||||| ||||||||||| Sbjct 1123303 GGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 1123344 >seq31544 Length=164 Score = 86.0 bits (94), Expect = 2e-12 Identities = 98/132 (74%), Gaps = 0/132 (0%) Strand=Plus/Minus Query 40524 TCAGCAGAAGCTAAGTCTAGAGGAAAGTTGTGAGCGTTACGCTCGTGCATTACTTCCATA 40583 ||| ||| ||||| ||||||||| ||||| ||||| ||||| || ||||| ||||||||| Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73 Query 40584 CCTAGACTCTGTCTGTTAAGAACATCAGCCCAAGTAGGAATGACTTTACCATTAGCGTCT 40643 || ||| | | |||| || ||||||||| ||| ||| || ||| | | || Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGTATTAATTACACGACCTTGACTATCA 13 Query 40644 ACTACTGACTGG 40655 ||||| || ||| Sbjct 12 ACTACGGATTGG 1 >seq151 Length=2833985 Score = 86.0 bits (94), Expect = 2e-12 Identities = 88/115 (77%), Gaps = 0/115 (0%) Strand=Plus/Minus Query 40720 CAATAACCGGGAAAGCACCAAGAAAGAAGTGTAGCGCACGGCTATTGTTGAATGAAGCAT 40779 ||| |||| | ||||| | || |||||||||| || ||| ||||||||| ||||| Sbjct 2328135 CAAAAACCAGTGAAGCAGCTAGGAAGAAGTGTAACGAACGAGAATTGTTGAAACTAGCAT 2328076 Query 40780 ATTGAAATATTAGTCTACCAAAGTAACCGTGTGCAGCTACGATGTTATAAGTCTC 40834 || | || || | || ||||| ||||| || ||||||||||| |||||||| || Sbjct 2328075 ATAGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTC 2328021 >seq134 Length=15115857 Score = 84.2 bits (92), Expect = 6e-12 Identities = 181/269 (67%), Gaps = 5/269 (2%) Strand=Plus/Plus Query 41204 TAAAAAGTGAAAGACAATGAGTTGATATGGTCCGCCGTTGTATAGCCACTCGTCCAGTGT 41263 ||| ||||| | ||||| || | ||| || | | ||||||||| ||| || || | | Sbjct 3765733 TAAGAAGTGTAGAACAATTAGCTCATAAGGACTGTCGTTGTATAACCATTCATCAACAGA 3765792 Query 41264 GCCGGCTTCCCAGATTGGGTAGAAATGTAGTCCGATTGCGTTAGAGCTCGGAACGACAGC 41323 | |||||||| |||| ||| ||||| | || || | ||| | |||| | | Sbjct 3765793 TGCTGCTTCCCATATTGAGTAAAAATGCAAACCTATAGTTGTAGGAGTAGGAATAATGCC 3765852 Query 41324 TCCAGATATAATATTGTTCCCGTACATTAACGAGCCGGAAACGGGCTCACGTATGCCATC 41383 || | ||||||||||| || || | || || || |||| |||| || || ||||| Sbjct 3765853 ATCATAAATAATATTGTTACCATAAAGTAGAGATCCAGAAATAGGCTTACAGATACCATC 3765912 Query 41384 TATATCTACAGGCGGTGCTGCGATAAAGGCGATTATGAAACATGTGGTAGC--AGTTAGT 41441 ||||| || || || || | || ||||| || || | || | | ||| ||| | | Sbjct 3765913 AATATCAACTGGAGGAGCAACAATGAAGGCAATAAT---AAATATAGAAGCTGAGTCAAT 3765969 Query 41442 AATGCTGGAATCATTAGCACACCAAACCA 41470 || | || ||||| | ||||||||||| Sbjct 3765970 AAGGTAGGGATCATCAAAACACCAAACCA 3765998 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 143640325592784