Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_021071.1 Length=177211 Score E Sequences producing significant alignments: (Bits) Value seq444 578 4e-160 seq31551 246 3e-60 seq31730 241 1e-58 seq31523 156 5e-33 seq203 138 1e-27 seq134 114 1e-20 seq85 114 1e-20 seq77 104 3e-17 seq31544 87.8 2e-12 >seq444 Length=4271 Score = 578 bits (640), Expect = 4e-160 Identities = 707/962 (73%), Gaps = 12/962 (1%) Strand=Plus/Plus Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408 || |||| ||||||| ||||| ||||||||||||||||| ||||| || ||||||||||| Sbjct 119 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 178 Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468 ||| ||||| || | ||||| || || ||||||||| ||| || || ||| Sbjct 179 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 235 Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525 ||||| || ||||||||||| |||||||| || |||||||| |||||||| | Sbjct 236 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 295 Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585 ||| | ||||| ||||| || | || || || | || || | |||||| || | | Sbjct 296 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 355 Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645 | || ||||||||| ||||| ||||| ||||| || || || || || |||||||| Sbjct 356 ACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 415 Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705 |||||||||||||| ||||||||||| ||||| ||||||| | || || || | Sbjct 416 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 475 Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765 || || ||||| ||||| | | |||||| || | ||||| |||||||||||||| || Sbjct 476 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 535 Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825 || || ||||||||||| ||||| || | ||| || |||||||||||||| |||||||| Sbjct 536 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 595 Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885 ||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | || Sbjct 596 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 655 Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945 ||| ||| || ||||| | ||||||| |||||| ||||| || || | || || Sbjct 656 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 715 Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005 ||| || ||||| ||| ||||||||||||||||| |||||| || ||||||||||| Sbjct 716 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 775 Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062 |||||| | | | ||| | || | | ||||| | || | |||| |||| Sbjct 776 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 832 Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122 || || || || | ||| ||||| | | ||| ||||||||||| || || || || | Sbjct 833 ACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAA 892 Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182 || || || ||| |||||| || ||||| ||||| || ||||| ||||| | || Sbjct 893 TCCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAG 952 Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242 || || | ||||||||| | |||||||| ||||| |||||||| || ||||||||||| Sbjct 953 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 1012 Query 68243 AATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302 || || || || | ||| | | ||| ||| |||||||| ||||| ||||| || Sbjct 1013 GATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 1072 Query 68303 AA 68304 || Sbjct 1073 AA 1074 >seq31551 Length=1713 Score = 246 bits (272), Expect = 3e-60 Identities = 318/438 (73%), Gaps = 7/438 (2%) Strand=Plus/Plus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| || |||||||| ||||| ||||| || |||||||||||||| Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGT-- 67470 ||||| || | ||||| || || ||||| ||| ||| || | ||| | | | Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838 Query 67471 ----CAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACA 67526 |||| || ||||||||||| ||||||||||| | || || ||||| || | | Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898 Query 67527 CCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTT 67586 || | |||||||||||||| | || ||||| | ||||| |||||||| || | Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958 Query 67587 CTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCA 67646 | || ||||||| | ||||| ||||||||||| || || || || ||||||||||| Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018 Query 67647 ACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGC 67706 || || || ||||| ||||||||||| ||||| ||||||| || || || | Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTACATTAGCAGATTCATTT 1078 Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766 || || ||||| ||||| | | ||| || || | ||||| ||||||||||| || || Sbjct 1079 TCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGA 1138 Query 67767 GAACCACCGAA-TACACC 67783 || || ||||| |||||| Sbjct 1139 GAGCCGCCGAAGTACACC 1156 >seq31730 Length=297 Score = 241 bits (266), Expect = 1e-58 Identities = 229/293 (78%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 67719 CTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAAT 67778 ||||| | | ||| || || | ||||| ||||||||||| || || || || |||||| Sbjct 296 CTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 237 Query 67779 ACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAAC 67838 ||||| ||||| || | ||| || |||||||||||||||||||||||||| || ||||| Sbjct 236 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 177 Query 67839 ACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCT 67898 || | |||| |||| |||||||||||||| || |||||||| | ||||| ||| ||| Sbjct 176 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCT 117 Query 67899 TGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCT 67958 ||||| | || |||| |||||| ||||| || || | || ||||| || ||||| Sbjct 116 TGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 57 Query 67959 ACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011 ||| |||||||| |||||||| |||||| || ||||||||||| |||||| Sbjct 56 ACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 4 >seq31523 Length=225 Score = 156 bits (172), Expect = 5e-33 Identities = 155/201 (77%), Gaps = 0/201 (0%) Strand=Plus/Minus Query 67487 GAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546 ||| |||||||| || |||||||| |||||||| | ||| | |||||||||||||| Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166 Query 67547 GCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGC 67606 | || ||||| | ||||| ||||||||||| | | | || ||||||||| || Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106 Query 67607 ATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTC 67666 ||| ||||||||||| || || || || ||||||||||| || || || ||||| ||||| Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46 Query 67667 TTCTTGTCCGAACTTGTAACC 67687 ||||| ||||| ||||||| Sbjct 45 CTCTTGACCGAATCTGTAACC 25 >seq203 Length=8626763 Score = 138 bits (152), Expect = 1e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 67799 ATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGT 67858 ||| ||||| | |||||||||||||||||| |||||||| || | |||| | || |||| Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359 Query 67859 ACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAA 67918 || ||||| || |||||||| | ||| | || |||||||| | || |||| ||| Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419 Query 67919 GAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCAT 67978 ||| ||||| || | | || ||||| || ||||| ||| |||||||| ||||| Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479 Query 67979 ACCAAGACGGTAAGAAAGTTCCCACT 68004 ||| |||||| || ||||||| ||| Sbjct 3756480 ACCTAGACGGAAACTAAGTTCCTACT 3756505 >seq134 Length=15115857 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129 || || ||||| ||||| | || |||||||||||| || | || || || | ||| || Sbjct 3765770 TTGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGAGTAAAAATGCAAACCTATA 3765829 Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCT 68189 | | | | |||||| || || || |||| || |||||||| || | || || || Sbjct 3765830 GTTGTAGGAGTAGGAATAATGCCATCATAAATAATATTGTTACCATAAAGTAGAGATCCA 3765889 Query 68190 GCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATG 68249 | || ||| | | ||||||||| |||||||||||||| || ||||||| ||||| || Sbjct 3765890 GAAATAGGCTTACAGATACCATCAATATCAACTGGAGGAGCAACAATGAAGGCAATAATA 3765949 Query 68250 AAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299 || || |||| | | ||| ||| |||||||| ||||| ||||| Sbjct 3765950 AATATAGAAGCTG-AGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 3765998 >seq85 Length=5226098 Score = 114 bits (126), Expect = 1e-20 Identities = 125/165 (76%), Gaps = 6/165 (4%) Strand=Plus/Plus Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417 || ||| ||||| ||||||||||| ||||| |||| || |||||||||||||| ||||| Sbjct 1123183 AGTAGCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAG 1123242 Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAAC 67474 || | |||| || || |||| ||| ||| || || |||| ||||| Sbjct 1123243 GTTAGCACAATTAATAATATCAACCCATGTATTAATTAC---ACGACCTTGACTATCAAC 1123299 Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519 |||||||||||||| |||||||| || |||||||| |||||||| Sbjct 1123300 TACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 1123344 >seq77 Length=8408033 Score = 104 bits (114), Expect = 3e-17 Identities = 230/344 (67%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 67899 TGACCGAAAGGATAGACCAAGAACACAGCGAATGC---TGCAGACACTGGAGCAGAGTAT 67955 ||||| | || |||| |||||| ||| | || |||| || ||||| || ||| Sbjct 2699035 TGACCAATTGGGTAGATCAAGAAAACAATAATAGCAATTGCA---ACAGGAGCTGAATAT 2698979 Query 67956 GCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAG 68015 || ||| ||||||| | |||||| ||||| || ||||||||||| |||||| | Sbjct 2698978 GCAACAGCAATCCAAGAGCACATACCTAGACGAAAACTAAGTTCCCACTCACGACCCATG 2698919 Query 68016 TATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075 || | | || | | |||||| | || | || | |||| || || || || Sbjct 2698918 TAACAAGCTACACCAAGTAAGAAGTGTAGTACAATTAGCTCATAAGGACCGCCGTTGTAT 2698859 Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135 ||||| ||||| | | || ||||||| | || || || | || | ||| || || Sbjct 2698858 AACCATTCATCAACTGATGATGCTTCCTACATTGGGTAAATATGCAAACCTATAGCTGAA 2698799 Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195 ||| | |||| || ||||| || || || ||||| || || | || || | | || | Sbjct 2698798 GAAGTTGGAATAATGGCACCGGAGATAATATTGTTTCCATAAAGTAGAGATCTGGAAATA 2698739 Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAA 68239 |||| | |||||||| ||||| | |||||| || || ||||| Sbjct 2698738 GGTTTGCGAATACCATCAATATCTATTGGAGGAGCAGCCATGAA 2698695 >seq31544 Length=164 Score = 87.8 bits (96), Expect = 2e-12 Identities = 101/135 (75%), Gaps = 6/135 (4%) Strand=Plus/Minus Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412 ||| ||||||| ||||| ||||||||||| ||||| ||||| || |||||||||||||| Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73 Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCG 67469 ||||| || | |||| || || ||||| ||| ||| || || |||| Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTA 16 Query 67470 TCAACGACGGATTGG 67484 ||||| ||||||||| Sbjct 15 TCAACTACGGATTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 566689409108160