Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_021071.1
Length=177211
Score E
Sequences producing significant alignments: (Bits) Value
seq444 578 4e-160
seq31551 246 3e-60
seq31730 241 1e-58
seq31523 156 5e-33
seq203 138 1e-27
seq134 114 1e-20
seq85 114 1e-20
seq77 104 3e-17
seq31544 87.8 2e-12
>seq444
Length=4271
Score = 578 bits (640), Expect = 4e-160
Identities = 707/962 (73%), Gaps = 12/962 (1%)
Strand=Plus/Plus
Query 67349 AGACTCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTC 67408
|| |||| ||||||| ||||| ||||||||||||||||| ||||| || |||||||||||
Sbjct 119 AGCCTCAACAGCAGCTAGGTCTAGAGGGAAGTTGTGAGCATTACGTTCATGCATAACTTC 178
Query 67409 CATTCCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGC 67468
||| ||||| || | ||||| || || ||||||||| ||| || || |||
Sbjct 179 CATACCAAGGTTAGCACGGTTAATAATATCAGCCCAAGTATTAATAAC---ACGTCCTTG 235
Query 67469 G---TCAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACAC 67525
||||| || ||||||||||| |||||||| || |||||||| |||||||| |
Sbjct 236 ACTATCAACTACTGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGTACTAAT 295
Query 67526 ACCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACT 67585
||| | ||||| ||||| || | || || || | || || | |||||| || | |
Sbjct 296 ACCTAAAGCAGTAAACCAAATACCTACTACCGGCCAAGCCGCTAAGAAGAAATGTAAAGA 355
Query 67586 TCTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGC 67645
| || ||||||||| ||||| ||||| ||||| || || || || || ||||||||
Sbjct 356 ACGAGAATTGTTGAAACTAGCATATTGGAAAATCAATCGGCCAAAATAACCGTGAGCAGC 415
Query 67646 AACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTG 67705
|||||||||||||| ||||||||||| ||||| ||||||| | || || || |
Sbjct 416 TACAATGTTGTAAGTTTCTTCTTCTTGCCCGAATCTGTAACCTTCATTAGCAGATTCATT 475
Query 67706 CTCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAG 67765
|| || ||||| ||||| | | |||||| || | ||||| |||||||||||||| ||
Sbjct 476 TTCTGTGGTTTCCCTGATCAAACTAGAAGTTACCAAGGAACCATGCATAGCACTAAAAAG 535
Query 67766 TGAACCACCGAATACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTG 67825
|| || ||||||||||| ||||| || | ||| || |||||||||||||| ||||||||
Sbjct 536 GGAGCCGCCGAATACACCAGCTACACCTAACATGTGAAATGGGTGCATAAGAATGTTGTG 595
Query 67826 CTCTGCTTGGAACACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTC 67885
||| || ||||| || | ||| |||| ||||||||||| || || |||||||| | ||
Sbjct 596 CTCAGCCTGGAATACAATCATAAAGTTGAAAGTACCAGAGATTCCTAGAGGCATACCATC 655
Query 67886 AGAGAAAGAACCTTGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGG 67945
||| ||| || ||||| | ||||||| |||||| ||||| || || | || ||
Sbjct 656 AGAAAAACTTCCCTGACCAATTGGATAGATCAAGAAAACAGCAGTCGCAGCTGCAACAGG 715
Query 67946 AGCAGAGTATGCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTG 68005
||| || ||||| ||| ||||||||||||||||| |||||| || |||||||||||
Sbjct 716 AGCTGAATATGCAACAGCAATCCAAGGACGCATACCCAGACGGAAACTAAGTTCCCACTC 775
Query 68006 ACGACC---ACAGTATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGG 68062
|||||| | | | ||| | || | | ||||| | || | |||| ||||
Sbjct 776 ACGACCCATATAACAAGCT---ACACCAAGTAAAAAGTGTAGAACAATTAGTTCATAAGG 832
Query 68063 TCCACCATTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAG 68122
|| || || || | ||| ||||| | | ||| ||||||||||| || || || || |
Sbjct 833 ACCGCCGTTGTATAGCCATTCATCAACGGATGCAGCTTCCCAGATTGGGTAAAAATGCAA 892
Query 68123 ACCGATTGCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAG 68182
|| || || ||| |||||| || ||||| ||||| || ||||| ||||| | ||
Sbjct 893 TCCAATAGCTGCAGAAGTAGGAATAATGGCACCGGAAATAATATTGTTTCCGTAAAGAAG 952
Query 68183 CGAACCTGCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGC 68242
|| || | ||||||||| | |||||||| ||||| |||||||| || |||||||||||
Sbjct 953 AGATCCAGAAACAGGTTCACGAATACCATCAATATCTACTGGAGGAGCAGCAATGAATGC 1012
Query 68243 AATGATGAAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCAACC 68302
|| || || || | ||| | | ||| ||| |||||||| ||||| ||||| ||
Sbjct 1013 GATAATAAAAACAGAAGTTGCGGTCAATAAGGTAGGGATCATCAAAACACCAAACCATCC 1072
Query 68303 AA 68304
||
Sbjct 1073 AA 1074
>seq31551
Length=1713
Score = 246 bits (272), Expect = 3e-60
Identities = 318/438 (73%), Gaps = 7/438 (2%)
Strand=Plus/Plus
Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412
||| ||||||| ||||| || |||||||| ||||| ||||| || ||||||||||||||
Sbjct 719 TCAACAGCAGCTAGGTCTAGGGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 778
Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCTGCGT-- 67470
||||| || | ||||| || || ||||| ||| ||| || | ||| | | |
Sbjct 779 CCAAGGTTAGCACGGTTAATGAGATCAGCCCAGGTATTAATTACATGACCTTTTCCTTGA 838
Query 67471 ----CAACGACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACA 67526
|||| || ||||||||||| ||||||||||| | || || ||||| || | |
Sbjct 839 CTATCAACTACAGATTGGTTGAAATTGAAACCGTTTAAGTGAAAAGCCATGGTGCTAATA 898
Query 67527 CCCATTGCAGTGAACCAGATGCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTT 67586
|| | |||||||||||||| | || ||||| | ||||| |||||||| || |
Sbjct 899 CCTAAAGCAGTGAACCAGATACCTACTACAGGCCAAGCAGCTAGGAAGAAATGTAAGGAA 958
Query 67587 CTTGAGTTGTTGAAAGATGCATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCA 67646
| || ||||||| | ||||| ||||||||||| || || || || |||||||||||
Sbjct 959 CGAGAATTGTTGACACTAGCATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCT 1018
Query 67647 ACAATGTTGTAAGTCTCTTCTTCTTGTCCGAACTTGTAACCGTAGTTCTGTGACTCTTGC 67706
|| || || ||||| ||||||||||| ||||| ||||||| || || || |
Sbjct 1019 ACGATATTATAAGTTTCTTCTTCTTGACCGAATCTGTAACCTACATTAGCAGATTCATTT 1078
Query 67707 TCAGTAGTTTCTCTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGT 67766
|| || ||||| ||||| | | ||| || || | ||||| ||||||||||| || ||
Sbjct 1079 TCTGTGGTTTCCCTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGA 1138
Query 67767 GAACCACCGAA-TACACC 67783
|| || ||||| ||||||
Sbjct 1139 GAGCCGCCGAAGTACACC 1156
>seq31730
Length=297
Score = 241 bits (266), Expect = 1e-58
Identities = 229/293 (78%), Gaps = 0/293 (0%)
Strand=Plus/Minus
Query 67719 CTGATAAGAGAAGAAGTAACAAGAGAACCGTGCATAGCACTAAAGAGTGAACCACCGAAT 67778
||||| | | ||| || || | ||||| ||||||||||| || || || || ||||||
Sbjct 296 CTGATCAAACTAGAGGTTACCAAGGAACCATGCATAGCACTGAATAGGGAGCCGCCGAAT 237
Query 67779 ACACCTGCTACTCCAAGCATATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAAC 67838
||||| ||||| || | ||| || |||||||||||||||||||||||||| || |||||
Sbjct 236 ACACCAGCTACGCCTAACATGTGAAATGGGTGCATAAGGATGTTGTGCTCAGCCTGGAAT 177
Query 67839 ACGAACATGTAGTTAAAAGTACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCT 67898
|| | |||| |||| |||||||||||||| || |||||||| | ||||| ||| |||
Sbjct 176 ACAATCATGAAGTTGAAAGTACCAGAAATTCCTAGAGGCATACCATCAGAAAAACTTCCT 117
Query 67899 TGACCGAAAGGATAGACCAAGAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCT 67958
||||| | || |||| |||||| ||||| || || | || ||||| || |||||
Sbjct 116 TGACCAATTGGGTAGATCAAGAAAACAGCAGTAGCAGCTGCAACAGGAGCTGAATATGCA 57
Query 67959 ACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACC 68011
||| |||||||| |||||||| |||||| || ||||||||||| ||||||
Sbjct 56 ACAGCAATCCAAGGGCGCATACCCAGACGGAAACTAAGTTCCCACTCACGACC 4
>seq31523
Length=225
Score = 156 bits (172), Expect = 5e-33
Identities = 155/201 (77%), Gaps = 0/201 (0%)
Strand=Plus/Minus
Query 67487 GAAGTTGAAACCGTTGAGGTTGAATGCCATAGTTGACACACCCATTGCAGTGAACCAGAT 67546
||| |||||||| || |||||||| |||||||| | ||| | ||||||||||||||
Sbjct 225 GAAATTGAAACCATTTAGGTTGAAAGCCATAGTGCTGATACCTAAAGCAGTGAACCAGAT 166
Query 67547 GCAGACCACAGGGAATGCAGCAAGGAAGAAGTGAAGACTTCTTGAGTTGTTGAAAGATGC 67606
| || ||||| | ||||| ||||||||||| | | | || ||||||||| ||
Sbjct 165 ACCTACTACAGGCCAAGCAGCTAGGAAGAAGTGTAAAGAACGAGAATTGTTGAAACTAGC 106
Query 67607 ATACTGGAAGATCAAGCGACCGAAGTATCCATGAGCAGCAACAATGTTGTAAGTCTCTTC 67666
||| ||||||||||| || || || || ||||||||||| || || || ||||| |||||
Sbjct 105 ATATTGGAAGATCAATCGGCCAAAATAACCATGAGCAGCTACGATATTATAAGTTTCTTC 46
Query 67667 TTCTTGTCCGAACTTGTAACC 67687
||||| ||||| |||||||
Sbjct 45 CTCTTGACCGAATCTGTAACC 25
>seq203
Length=8626763
Score = 138 bits (152), Expect = 1e-27
Identities = 154/206 (75%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 67799 ATGGAATGGGTGCATAAGGATGTTGTGCTCTGCTTGGAACACGAACATGTAGTTAAAAGT 67858
||| ||||| | |||||||||||||||||| |||||||| || | |||| | || ||||
Sbjct 3756300 ATGCAATGGATACATAAGGATGTTGTGCTCAGCTTGGAATACAATCATGAAATTGAAAGC 3756359
Query 67859 ACCAGAAATACCAAGAGGCATTGCGTCAGAGAAAGAACCTTGACCGAAAGGATAGACCAA 67918
|| ||||| || |||||||| | ||| | || |||||||| | || |||| |||
Sbjct 3756360 ACTGGAAATTCCTAGAGGCATATCATCATAAAATCTTCCTTGACCAATTGGGTAGATCAA 3756419
Query 67919 GAACACAGCGAATGCTGCAGACACTGGAGCAGAGTATGCTACACAGATCCAAGGACGCAT 67978
||| ||||| || | | || ||||| || ||||| ||| |||||||| |||||
Sbjct 3756420 GAAAACAGCAGTAGCAGTTGCAACCGGAGCTGAATATGCAACAACAATCCAAGGGCGCAT 3756479
Query 67979 ACCAAGACGGTAAGAAAGTTCCCACT 68004
||| |||||| || ||||||| |||
Sbjct 3756480 ACCTAGACGGAAACTAAGTTCCTACT 3756505
>seq134
Length=15115857
Score = 114 bits (126), Expect = 1e-20
Identities = 164/230 (71%), Gaps = 1/230 (0%)
Strand=Plus/Plus
Query 68070 TTATACAACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATT 68129
|| || ||||| ||||| | || |||||||||||| || | || || || | ||| ||
Sbjct 3765770 TTGTATAACCATTCATCAACAGATGCTGCTTCCCATATTGAGTAAAAATGCAAACCTATA 3765829
Query 68130 GCGTTTGAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCT 68189
| | | | |||||| || || || |||| || |||||||| || | || || ||
Sbjct 3765830 GTTGTAGGAGTAGGAATAATGCCATCATAAATAATATTGTTACCATAAAGTAGAGATCCA 3765889
Query 68190 GCAACAGGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAATGCAATGATG 68249
| || ||| | | ||||||||| |||||||||||||| || ||||||| ||||| ||
Sbjct 3765890 GAAATAGGCTTACAGATACCATCAATATCAACTGGAGGAGCAACAATGAAGGCAATAATA 3765949
Query 68250 AAGCAAGTTGCTGCTGCGAGCAAGCAAGGAATCATCAACACACCGAACCA 68299
|| || |||| | | ||| ||| |||||||| ||||| |||||
Sbjct 3765950 AATATAGAAGCTG-AGTCAATAAGGTAGGGATCATCAAAACACCAAACCA 3765998
>seq85
Length=5226098
Score = 114 bits (126), Expect = 1e-20
Identities = 125/165 (76%), Gaps = 6/165 (4%)
Strand=Plus/Plus
Query 67358 AGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATTCCAAG 67417
|| ||| ||||| ||||||||||| ||||| |||| || |||||||||||||| |||||
Sbjct 1123183 AGTAGCTAGGTCTAGAGGGAAGTTATGAGCATTACATTCATGCATAACTTCCATACCAAG 1123242
Query 67418 TCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCGTCAAC 67474
|| | |||| || || |||| ||| ||| || || |||| |||||
Sbjct 1123243 GTTAGCACAATTAATAATATCAACCCATGTATTAATTAC---ACGACCTTGACTATCAAC 1123299
Query 67475 GACGGATTGGTTGAAGTTGAAACCGTTGAGGTTGAATGCCATAGT 67519
|||||||||||||| |||||||| || |||||||| ||||||||
Sbjct 1123300 TACGGATTGGTTGAAATTGAAACCATTTAGGTTGAAAGCCATAGT 1123344
>seq77
Length=8408033
Score = 104 bits (114), Expect = 3e-17
Identities = 230/344 (67%), Gaps = 6/344 (2%)
Strand=Plus/Minus
Query 67899 TGACCGAAAGGATAGACCAAGAACACAGCGAATGC---TGCAGACACTGGAGCAGAGTAT 67955
||||| | || |||| |||||| ||| | || |||| || ||||| || |||
Sbjct 2699035 TGACCAATTGGGTAGATCAAGAAAACAATAATAGCAATTGCA---ACAGGAGCTGAATAT 2698979
Query 67956 GCTACACAGATCCAAGGACGCATACCAAGACGGTAAGAAAGTTCCCACTGACGACCACAG 68015
|| ||| ||||||| | |||||| ||||| || ||||||||||| |||||| |
Sbjct 2698978 GCAACAGCAATCCAAGAGCACATACCTAGACGAAAACTAAGTTCCCACTCACGACCCATG 2698919
Query 68016 TATGCTGTGATTCCGATAAGGAAGTGGAAGACTACAAGTTGGAAAGGTCCACCATTATAC 68075
|| | | || | | |||||| | || | || | |||| || || || ||
Sbjct 2698918 TAACAAGCTACACCAAGTAAGAAGTGTAGTACAATTAGCTCATAAGGACCGCCGTTGTAT 2698859
Query 68076 AACCACTCATCTAGAGTTGCTGCTTCCCAGATAGGATAGAAGTGAAGACCGATTGCGTTT 68135
||||| ||||| | | || ||||||| | || || || | || | ||| || ||
Sbjct 2698858 AACCATTCATCAACTGATGATGCTTCCTACATTGGGTAAATATGCAAACCTATAGCTGAA 2698799
Query 68136 GAACTAGGAACAACAGCACCAGAAATGATGTTGTTACCGTACATGAGCGAACCTGCAACA 68195
||| | |||| || ||||| || || || ||||| || || | || || | | || |
Sbjct 2698798 GAAGTTGGAATAATGGCACCGGAGATAATATTGTTTCCATAAAGTAGAGATCTGGAAATA 2698739
Query 68196 GGTTCTCTGATACCATCGATATCAACTGGAGGTGCTGCAATGAA 68239
|||| | |||||||| ||||| | |||||| || || |||||
Sbjct 2698738 GGTTTGCGAATACCATCAATATCTATTGGAGGAGCAGCCATGAA 2698695
>seq31544
Length=164
Score = 87.8 bits (96), Expect = 2e-12
Identities = 101/135 (75%), Gaps = 6/135 (4%)
Strand=Plus/Minus
Query 67353 TCAGCAGCAGCAAGGTCAAGAGGGAAGTTGTGAGCGTTACGCTCGTGCATAACTTCCATT 67412
||| ||||||| ||||| ||||||||||| ||||| ||||| || ||||||||||||||
Sbjct 132 TCAACAGCAGCTAGGTCTAGAGGGAAGTTATGAGCATTACGTTCATGCATAACTTCCATA 73
Query 67413 CCAAGTCCTGCTCTGTTAAGGATGTCTGCCCAAGTAGGAATCACTTTACCACCT---GCG 67469
||||| || | |||| || || ||||| ||| ||| || || ||||
Sbjct 72 CCAAGATTAGCACGATTAATAATATCAGCCCAGGTATTAATTAC---ACGACCTTGACTA 16
Query 67470 TCAACGACGGATTGG 67484
||||| |||||||||
Sbjct 15 TCAACTACGGATTGG 1
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 566689409108160
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