Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_021246.1
Length=281182
Score E
Sequences producing significant alignments: (Bits) Value
seq49 102 1e-16
seq203 91.5 3e-13
>seq49
Length=4798478
Score = 102 bits (112), Expect = 1e-16
Identities = 161/231 (70%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| || || |||| || || |||| || | || | |||||| || || || ||
Sbjct 2841087 ATGCCTCCCCTCAGGCGCAGAACCAAGTGAAGAGTGGACTCTTTCTGGATGTTGTAATCC 2841028
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| || || ||| ||| |||| ||||| ||||||||||| | ||||| ||||| ||
Sbjct 2841027 GCCAAAGTCCTACCATCTTCTAGCTGTTTCCCGGCAAAAATAAGCCTCTGCTGATCCGGG 2840968
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || ||||| || || || ||||| | ||| | || || || || || ||||
Sbjct 2840967 GGAATGCCTTCCTTGTCCTGAATTTTCGCTTTGACGTTGTCGATGGTGTCAGAGCTCTCA 2840908
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCATT 193361
||||| | ||| || ||||| || || || || || ||||| |||||||||
Sbjct 2840907 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTCACAAAAATTTGCATT 2840857
>seq203
Length=8626763
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 193131 ATACCACCTCTCAATCGAAGTACCAGATGCAATGTAGCCTCTTTAGAAATATTATAGTCG 193190
|| ||||| | ||| || || |||| || | ||| | ||||| || || |||||
Sbjct 5730387 ATCCCACCCCGCAAACGGAGCACCAAGTGGAGTGTGGATTCTTTCTGGATGTTGTAGTCC 5730328
Query 193191 GATAACGTTCTAGAATCGTCTAATTGTTTTCCGGCAAAAATTAATCTCTGTTGATCAGGA 193250
| | ||| || ||| || | || ||||| |||||||| | ||||| || || ||
Sbjct 5730327 GCAAGCGTCCTGCCATCTTCAAGCTGCTTTCCTGCAAAAATGAGCCTCTGCTGGTCCGGT 5730268
Query 193251 GGTATTCCTTCTTTATCTTGTATTTTGGTTTTTATATTTAAAATAGTATCGGAAGACTCA 193310
|| || || || || ||||| || || | || | ||| ||| || || || ||||
Sbjct 5730267 GGAATACCCTCCTTGTCTTGGATCTTAGCCTTGACATTGTCAATGGTGTCAGAGCTCTCA 5730208
Query 193311 ACTTCTAGAGTTATAGTTTTACCTGTTAGCGTTTTTACAAATATTTGCAT 193360
|||||||| || || || || || || || || || ||||| ||||||||
Sbjct 5730207 ACTTCTAGGGTAATTGTCTTCCCAGTGAGGGTCTTCACAAAGATTTGCAT 5730158
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 899245327144320
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |