Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq49 104 3e-17 seq652 89.7 8e-13 >seq49 Length=4798478 Score = 104 bits (114), Expect = 3e-17 Identities = 149/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881 ||||||||| ||| | || || | ||||| ||||| || || || ||||| || || Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941 ||| | ||| || || ||| ||||| || || ||||||||||| || || || || Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATCA 2870032 Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001 || || | |||| ||| || || ||||| |||||| || ||| | |||||||||| Sbjct 2870033 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATAA 2870092 Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| |||| ||||| || || Sbjct 2870093 CATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122 Score = 98.7 bits (108), Expect = 1e-15 Identities = 147/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||| ||||| ||||| || || ||||| || ||| Sbjct 2841314 ATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACTATCACTTTGGAAGTGGAGAGTTCA 2841373 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| || || || ||||| || ||||| || || || || Sbjct 2841374 GACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 2841433 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||| |||||||||||||| || ||||| | || ||||| Sbjct 2841434 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAAGACGGGAGGACTTTGGCTGACTATAAC 2841493 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| |||| || || || || Sbjct 2841494 ATCCAGAAAGAGTCGACTCTACACTTGGT 2841522 Score = 93.3 bits (102), Expect = 6e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || |||||||||| || || || || ||||| || ||| Sbjct 2847302 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTTTGGAAGTGGAGAGTTCA 2847361 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| || || || ||||| || ||||| || || || || Sbjct 2847362 GACACCATTGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 2847421 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || |||| | |||||| |||||||||||||| || ||||| | || ||||| Sbjct 2847422 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAAGACGGGAGGACTTTGGCTGACTATAAC 2847481 Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031 || |||||| |||| || || || || Sbjct 2847482 ATCCAGAAAGAGTCGACTCTACACTTGGT 2847510 Score = 87.8 bits (96), Expect = 3e-12 Identities = 147/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | || || | ||||| || || ||||| | || ||||| ||| Sbjct 2840630 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACAATTACTCTGGAGGTCGAGAGTTCC 2840689 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| || ||||| |||||| || || |||||||| || || ||||| || Sbjct 2840690 GATACCATTGACAATGTGAAGGCTAAAATCCAGGACAAAGAAGGGATCCCCCCAGACCAG 2840749 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | ||| || ||||||||||| ||| ||| || | |||| || | Sbjct 2840750 CAGCGGTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACGCTTGCAGACTACA-- 2840807 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031 | ||||||| || | || ||||| || || Sbjct 2840808 ACATCCAAAAGGAATCCACCCTTCACTTGGT 2840838 >seq652 Length=2384379 Score = 89.7 bits (98), Expect = 8e-13 Identities = 148/212 (70%), Gaps = 4/212 (2%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| |||||| | || || | || || || || || || || |||||||| || Sbjct 465286 ATGCAGATATTTGTCAAGACCCTTACCGGGAAGACCATAACTTTGGAAGTCGAGAGCTCG 465345 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| || || || ||| ||| ||||| || || |||||||| || ||||| || Sbjct 465346 GATACCGTTGATAATGTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATCAG 465405 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||||| ||| || ||||||||||| ||| | | || | | ||||| | Sbjct 465406 CAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAGGATGGCCGGACACTGGCGGATTACA-- 465463 Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032 | ||||||| ||| | || || ||| | ||| Sbjct 465464 ACATCCAAAAGGAGTCAACTCTACATCTTGTG 465495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731539217801600