Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_021247.1
Length=228750
Score E
Sequences producing significant alignments: (Bits) Value
seq49 104 3e-17
seq652 89.7 8e-13
>seq49
Length=4798478
Score = 104 bits (114), Expect = 3e-17
Identities = 149/210 (71%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 155822 AATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTC 155881
||||||||| ||| | || || | ||||| ||||| || || || ||||| || ||
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 155882 TGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACA 155941
||| | ||| || || ||| ||||| || || ||||||||||| || || || ||
Sbjct 2869973 TGACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATCA 2870032
Query 155942 ACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAA 156001
|| || | |||| ||| || || ||||| |||||| || ||| | ||||||||||
Sbjct 2870033 GCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATAA 2870092
Query 156002 TATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| |||||| |||| ||||| || ||
Sbjct 2870093 CATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122
Score = 98.7 bits (108), Expect = 1e-15
Identities = 147/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||| ||||| ||||| || || ||||| || |||
Sbjct 2841314 ATGCAGATCTTTGTCAAGACCCTGACCGGAAAGACTATCACTTTGGAAGTGGAGAGTTCA 2841373
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| |||||||| || || || ||||| || ||||| || || || ||
Sbjct 2841374 GACACCATTGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 2841433
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || |||| | |||||| |||||||||||||| || ||||| | || |||||
Sbjct 2841434 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAAGACGGGAGGACTTTGGCTGACTATAAC 2841493
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| |||||| |||| || || || ||
Sbjct 2841494 ATCCAGAAAGAGTCGACTCTACACTTGGT 2841522
Score = 93.3 bits (102), Expect = 6e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || |||||||||| || || || || ||||| || |||
Sbjct 2847302 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTTTGGAAGTGGAGAGTTCA 2847361
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|| | ||| || ||||| || || || ||||| || ||||| || || || ||
Sbjct 2847362 GACACCATTGACAATGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCTGACCAG 2847421
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || |||| | |||||| |||||||||||||| || ||||| | || |||||
Sbjct 2847422 CAGAGGCTGATCTTTGCCGGGAAGCAGCTCGAAGACGGGAGGACTTTGGCTGACTATAAC 2847481
Query 156003 ATATCCAAAGAGGCGACGCTTCATTTAGT 156031
|| |||||| |||| || || || ||
Sbjct 2847482 ATCCAGAAAGAGTCGACTCTACACTTGGT 2847510
Score = 87.8 bits (96), Expect = 3e-12
Identities = 147/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| || ||| | || || | ||||| || || ||||| | || ||||| |||
Sbjct 2840630 ATGCAGATCTTTGTGAAGACCCTCACTGGCAAGACAATTACTCTGGAGGTCGAGAGTTCC 2840689
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| ||| || ||||| |||||| || || |||||||| || || ||||| ||
Sbjct 2840690 GATACCATTGACAATGTGAAGGCTAAAATCCAGGACAAAGAAGGGATCCCCCCAGACCAG 2840749
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| | ||||| | ||| || ||||||||||| ||| ||| || | |||| || |
Sbjct 2840750 CAGCGGTTGATCTTTGCTGGCAAGCAGCTCGAGGATGGCAGGACGCTTGCAGACTACA-- 2840807
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGT 156031
| ||||||| || | || ||||| || ||
Sbjct 2840808 ACATCCAAAAGGAATCCACCCTTCACTTGGT 2840838
>seq652
Length=2384379
Score = 89.7 bits (98), Expect = 8e-13
Identities = 148/212 (70%), Gaps = 4/212 (2%)
Strand=Plus/Plus
Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882
||||| |||||| | || || | || || || || || || || |||||||| ||
Sbjct 465286 ATGCAGATATTTGTCAAGACCCTTACCGGGAAGACCATAACTTTGGAAGTCGAGAGCTCG 465345
Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942
|||| || || || ||| ||| ||||| || || |||||||| || ||||| ||
Sbjct 465346 GATACCGTTGATAATGTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATCAG 465405
Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002
|| || ||||||| ||| || ||||||||||| ||| | | || | | ||||| |
Sbjct 465406 CAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAGGATGGCCGGACACTGGCGGATTACA-- 465463
Query 156003 ATATCCAAA--GAGGCGACGCTTCATTTAGTG 156032
| ||||||| ||| | || || ||| | |||
Sbjct 465464 ACATCCAAAAGGAGTCAACTCTACATCTTGTG 465495
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 731539217801600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |