Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq652 95.1 2e-14 seq49 95.1 2e-14 seq203 91.5 3e-13 >seq652 Length=2384379 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| | || || | || | ||||| ||| | ||| || ||| || ||||| Sbjct 465515 ATTCCACCACGGAGGCGAAGCACAAGATGTAGAGTTGACTCCTTTTGGATGTTGTAATCC 465456 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | ||| || |||| || | || || |||||||| || || ||||| ||||| || Sbjct 465455 GCCAGTGTCCGGCCATCCTCGAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGGG 465396 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || || ||||| ||| ||| |||||| | | ||| || || Sbjct 465395 GGAATGCCTTCCTTGTCCTGTATCTTAGCTTTGACATTATCAACGGTATCCGAGCTCTCG 465336 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 ||||| | ||| ||||| || || || | || || | |||||||||||| Sbjct 465335 ACTTCCAAAGTTATGGTCTTCCCGGTAAGGGTCTTGACAAATATCTGCAT 465286 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || ||||| | || || || | || | || || || ||||||||| Sbjct 464603 ATGCCACCCCTGAGACGGAGAACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAATCA 464544 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || ||| |||| || | || || ||||||||||| | ||||| || || || Sbjct 464543 GCCAAAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGG 464484 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || |||||||| || |||||||| || || ||||| | | ||||| ||| Sbjct 464483 GGGATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAACTGTGTCTGAACTTTCA 464424 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 464423 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAAATTTGCAT 464374 >seq49 Length=4798478 Score = 95.1 bits (104), Expect = 2e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || |||||||| ||||| | || ||||| | || | || || ||| || |||||| Sbjct 2846209 ATGCCACCTCTCAGACGAAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCA 2846150 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | | || || |||| || | || || ||||||||||| | ||||| || ||||| Sbjct 2846149 GCCAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGA 2846090 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| ||||| ||||| || || || |||||| || | || || ||| Sbjct 2846089 GGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCA 2846030 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || |||||||| || || || | || || | ||| |||||||| Sbjct 2846029 ACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| ||||| || | || || |||| || | || || ||| || |||||| Sbjct 2845981 ATGCCACCCCTAAGGCGAAGGACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCA 2845922 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| |||| || || ||||||||||| | || || || ||||| Sbjct 2845921 GCCAAAGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCAGGG 2845862 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || |||||||| || |||||||| || | ||||| || Sbjct 2845861 GGAATTCCCTCCTTGTCTTGTATCTTGGCCTTTACATTGTCAATTGTGTCTGAACTCTCA 2845802 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | || || ||||| Sbjct 2845801 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATTTGCAT 2845752 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| ||||| || | || || |||| || | || || ||| || |||||| Sbjct 2840175 ATGCCACCCCTAAGGCGAAGGACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCA 2840116 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || |||||||||||||| | || || || ||||| Sbjct 2840115 GCCAAAGTGCGCCCATCCTCGAGCTGCTTACCAGCAAAGATGAGCCTTTGCTGGTCAGGA 2840056 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 | ||||| || || ||||| || || |||||||| || | ||||| || Sbjct 2840055 GTGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCGATTGTGTCTGAACTCTCA 2839996 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||| || ||||| Sbjct 2839995 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATTTGCAT 2839946 Score = 86.0 bits (94), Expect = 1e-11 Identities = 157/230 (68%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || ||||| || || || | || || |||| || | || || ||| || |||||| Sbjct 2869459 ATGCCACCCCTGAGGCGAAGAACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCA 2869400 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || || || |||| || | || || ||||||||||| | || || || ||||| Sbjct 2869399 GCCAAAGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCAGGA 2869340 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || ||||| || || ||||| || || |||||||| || | ||||| || Sbjct 2869339 GGGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCGATTGTGTCTGAACTCTCA 2869280 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || ||||| || ||||| | ||||| | ||| |||||||| Sbjct 2869279 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 2869230 >seq203 Length=8626763 Score = 91.5 bits (100), Expect = 3e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366 || || || || ||||| | || || || | |||| ||| || || |||||||| Sbjct 5730159 ATGCCTCCCCTGAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTATAATCG 5730100 Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426 | || ||||| |||| || | || || ||||||||||| | ||||| || || || Sbjct 5730099 GCCAAGGTTCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGA 5730040 Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486 || || ||||| || ||||| ||||| |||||||||| || | || || ||| Sbjct 5730039 GGGATCCCTTCCTTGTCTTGAATTTTTGCTTTTACATTATCGATTGTGTCGGAGCTTTCC 5729980 Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536 || || || || || || || || || | ||||| | ||| || ||||| Sbjct 5729979 ACCTCAAGGGTGATTGTCTTGCCCGTAAGGGTTTTCACAAAGATTTGCAT 5729930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 984021165867600