Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_021248.1
Length=307691
Score E
Sequences producing significant alignments: (Bits) Value
seq652 95.1 2e-14
seq49 95.1 2e-14
seq203 91.5 3e-13
>seq652
Length=2384379
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| | || || | || | ||||| ||| | ||| || ||| || |||||
Sbjct 465515 ATTCCACCACGGAGGCGAAGCACAAGATGTAGAGTTGACTCCTTTTGGATGTTGTAATCC 465456
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | ||| || |||| || | || || |||||||| || || ||||| ||||| ||
Sbjct 465455 GCCAGTGTCCGGCCATCCTCGAGCTGCTTCCCAGCAAAAATCAACCTCTGCTGATCTGGG 465396
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || || ||||| ||| ||| |||||| | | ||| || ||
Sbjct 465395 GGAATGCCTTCCTTGTCCTGTATCTTAGCTTTGACATTATCAACGGTATCCGAGCTCTCG 465336
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
||||| | ||| ||||| || || || | || || | ||||||||||||
Sbjct 465335 ACTTCCAAAGTTATGGTCTTCCCGGTAAGGGTCTTGACAAATATCTGCAT 465286
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| || ||||| | || || || | || | || || || |||||||||
Sbjct 464603 ATGCCACCCCTGAGACGGAGAACCAAGTGGAGGGTGGATTCCTTCTGAATGTTATAATCA 464544
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || ||| |||| || | || || ||||||||||| | ||||| || || ||
Sbjct 464543 GCCAAAGTGCGTCCATCCTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGG 464484
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| |||||||| || |||||||| || || ||||| | | ||||| |||
Sbjct 464483 GGGATTCCTTCCTTGTCTTGTATCTTGGCCTTCACATTGTCAACTGTGTCTGAACTTTCA 464424
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || ||||| || ||||| | ||||| | || || |||||
Sbjct 464423 ACCTCAAGGGTGATGGTCTTGCCAGTAAGGGTTTTCACGAAAATTTGCAT 464374
>seq49
Length=4798478
Score = 95.1 bits (104), Expect = 2e-14
Identities = 159/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| |||||||| ||||| | || ||||| | || | || || ||| || ||||||
Sbjct 2846209 ATGCCACCTCTCAGACGAAGCACCAAATGAAGGGTGGATTCCTTTTGGATGTTGTAATCA 2846150
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| | || || |||| || | || || ||||||||||| | ||||| || |||||
Sbjct 2846149 GCCAGGGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTCTGCTGGTCAGGA 2846090
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| ||||| ||||| || || || |||||| || | || || |||
Sbjct 2846089 GGGATTCCCTCTTTGTCTTGAATCTTGGCCTTGACATTATCAATCGTGTCCGAGCTTTCA 2846030
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || |||||||| || || || | || || | ||| ||||||||
Sbjct 2846029 ACCTCGAGGGTAATGGTCTTGCCGGTGAGGGTCTTCACAAAGATCTGCAT 2845980
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| ||||| || | || || |||| || | || || ||| || ||||||
Sbjct 2845981 ATGCCACCCCTAAGGCGAAGGACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCA 2845922
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || || |||| |||| || || ||||||||||| | || || || |||||
Sbjct 2845921 GCCAAAGTGCGCCCATCCTCCAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCAGGG 2845862
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || |||||||| || |||||||| || | ||||| ||
Sbjct 2845861 GGAATTCCCTCCTTGTCTTGTATCTTGGCCTTTACATTGTCAATTGTGTCTGAACTCTCA 2845802
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || ||||| || ||||| | ||||| | || || |||||
Sbjct 2845801 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACGAAGATTTGCAT 2845752
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| ||||| || | || || |||| || | || || ||| || ||||||
Sbjct 2840175 ATGCCACCCCTAAGGCGAAGGACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCA 2840116
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || || |||| || | || |||||||||||||| | || || || |||||
Sbjct 2840115 GCCAAAGTGCGCCCATCCTCGAGCTGCTTACCAGCAAAGATGAGCCTTTGCTGGTCAGGA 2840056
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
| ||||| || || ||||| || || |||||||| || | ||||| ||
Sbjct 2840055 GTGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCGATTGTGTCTGAACTCTCA 2839996
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || ||||| || ||||| | ||||| | ||| || |||||
Sbjct 2839995 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATTTGCAT 2839946
Score = 86.0 bits (94), Expect = 1e-11
Identities = 157/230 (68%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| ||||| || || || | || || |||| || | || || ||| || ||||||
Sbjct 2869459 ATGCCACCCCTGAGGCGAAGAACCAAGTGTAGGGTTGATTCCTTCTGGATGTTGTAATCA 2869400
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || || || |||| || | || || ||||||||||| | || || || |||||
Sbjct 2869399 GCCAAAGTGCGCCCATCCTCGAGCTGCTTGCCAGCAAAGATGAGCCTTTGCTGGTCAGGA 2869340
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| ||||| || || ||||| || || |||||||| || | ||||| ||
Sbjct 2869339 GGGATTCCCTCCTTGTCTTGAATCTTGGCCTTTACATTGTCGATTGTGTCTGAACTCTCA 2869280
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || ||||| || ||||| | ||||| | ||| ||||||||
Sbjct 2869279 ACCTCAAGGGTGATGGTCTTGCCAGTAAGAGTTTTCACAAAGATCTGCAT 2869230
>seq203
Length=8626763
Score = 91.5 bits (100), Expect = 3e-13
Identities = 158/230 (69%), Gaps = 0/230 (0%)
Strand=Plus/Minus
Query 192307 ATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATATTATAATCA 192366
|| || || || ||||| | || || || | |||| ||| || || ||||||||
Sbjct 5730159 ATGCCTCCCCTGAGACGGAGCACCAAGTGGAGGGTAGACTCCTTCTGAATGTTATAATCG 5730100
Query 192367 GATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTTGATCAGGT 192426
| || ||||| |||| || | || || ||||||||||| | ||||| || || ||
Sbjct 5730099 GCCAAGGTTCGGCCATCTTCAAGCTGCTTGCCAGCAAAGATAAGCCTCTGCTGGTCCGGA 5730040
Query 192427 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTGACGATTCT 192486
|| || ||||| || ||||| ||||| |||||||||| || | || || |||
Sbjct 5730039 GGGATCCCTTCCTTGTCTTGAATTTTTGCTTTTACATTATCGATTGTGTCGGAGCTTTCC 5729980
Query 192487 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCAT 192536
|| || || || || || || || || | ||||| | ||| || |||||
Sbjct 5729979 ACCTCAAGGGTGATTGTCTTGCCCGTAAGGGTTTTCACAAAGATTTGCAT 5729930
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 984021165867600
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |