Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_021249.1
Length=282895
Score E
Sequences producing significant alignments: (Bits) Value
seq91 86.0 1e-11
seq49 84.2 4e-11
>seq91
Length=4251426
Score = 86.0 bits (94), Expect = 1e-11
Identities = 104/142 (73%), Gaps = 0/142 (0%)
Strand=Plus/Plus
Query 171835 TCATAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTAT 171894
||||| | || || || || | || || | ||| | ||| | ||| || || ||||
Sbjct 285767 TCATAGTTCCTCCCCTGAGCCTCAACACCAGATGAAGAGTCGACTCCTTTTGGATGTTAT 285826
Query 171895 AATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGT 171954
| |||| | || |||| | || |||||||| |||||||||||||| |||| ||||||||
Sbjct 285827 AGTCTGCAAGAGTTCGTCCATCTTCCAATTGCTTACCAGCAAAAATCAATCGCTGTTGGT 285886
Query 171955 CAGGTGGTATTCCTTCTTTATC 171976
| || || || ||||| || ||
Sbjct 285887 CCGGAGGAATACCTTCCTTGTC 285908
>seq49
Length=4798478
Score = 84.2 bits (92), Expect = 4e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Minus
Query 171840 ATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAATATTATAATCT 171899
|| || || || || || | || || || | ||| | |||||| || |||||||||
Sbjct 2870143 ATGCCTCCCCTCAGACGCAGAACCAAGTGAAGAGTCGACTCTTTCTGGATGTTATAATCT 2870084
Query 171900 GATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCTGTTGGTCAGGT 171959
| | || | | || || | ||||| ||||||||||| | ||||| || || ||
Sbjct 2870083 GCCAGAGTCCTACCATCTTCTAGCTGTTTCCCAGCAAAAATAAGCCTCTGCTGATCCGGG 2870024
Query 171960 GGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGATTCT 172019
|| || |||||||| || || ||||| ||| ||||| ||||| || || ||
Sbjct 2870023 GGAATGCCTTCTTTGTCCTGAATTTTTGCTTTGACATTGTCGATAGTGTCAGAGCTCTCA 2869964
Query 172020 ACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATT 172070
||||| | ||| || ||||| ||||| | || || | || || ||||||
Sbjct 2869963 ACTTCCAAAGTGATTGTTTTCCCAGTAAGGGTCTTGACAAAGATTTGCATT 2869913
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 904724434660800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |