Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq31095 129 2e-24 seq12 111 5e-19 seq109 105 2e-17 seq45 87.8 5e-12 seq134 86.0 2e-11 seq74 84.2 6e-11 >seq31095 Length=6821297 Score = 129 bits (142), Expect = 2e-24 Identities = 219/314 (70%), Gaps = 4/314 (1%) Strand=Plus/Plus Query 302565 CATAATGTCTTCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTT 302624 |||||| || |||||| ||| | ||| || | ||| ||||| ||||| ||| || || Sbjct 3134407 CATAATATCCTCCATAGCCTTCACTAATCGCCTCTGGATATATCCAGTCTCAGAAGTCTT 3134466 Query 302625 TACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGG 302684 ||||| |||||||| ||||| | | ||||||||||||||||| || | ||| | ||| Sbjct 3134467 GACAGCAGTATCAATCAGACCTTCCCTCCCACCCATAGCATGGAAAAAGAACTCCTGCGG 3134526 Query 302685 TCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAA 302744 | ||| | || | | || |||| || || ||||| || || || || Sbjct 3134527 AGTCAACCCACGAAGATACAAGTTCTCGACAAATCCACGACTTTCTGGTCCATAATCATC 3134586 Query 302745 CTTGGTAAAGTGTGGCAGGGTCCTGTTCTCAT--AGCCGTATGGGATACGCTTTCCATCA 302802 || ||||| || ||||| || | | ||| || | || | ||||| ||||| || || Sbjct 3134587 TTTTGTAAAATGGGGCAGAGTTC-GATCT-ATGAATCCAAACGGGATCCGCTTACCCTCG 3134644 Query 302803 ACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTGCCCTTGGAG 302862 || |||||||| || | || | | ||||||| |||||||| | || |||||||| Sbjct 3134645 ACATTCTGCTGACCAACACAAGCAGTCATCTGAGAAATATTGATGAAACCTCCCTTGGAT 3134704 Query 302863 CCAGCATTTACCAT 302876 |||||| | ||||| Sbjct 3134705 CCAGCAGTAACCAT 3134718 >seq12 Length=4956709 Score = 111 bits (122), Expect = 5e-19 Identities = 161/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 156042 GCAAAACTACCATTCCTCTTGCCACCC---TGATCTACATACCGAGCAGTCTTATTGAAG 156098 |||||| ||| || |||||||||||| ||||||||||| ||||| || | ||| || Sbjct 4011942 GCAAAATCACCTTTTCTCTTGCCACCCCCTTGATCTACATAACGAGCTGTATCATTAAAT 4012001 Query 156099 ACACCTAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCA 156158 || | |||||| |||| ||| ||||||||||| ||||| || || || || | |||| Sbjct 4012002 ACTCGTAGCATCGGAACAATGCCATTGGAAGTTCCATTCGTACCACGTATGTAACTACCA 4012061 Query 156159 GATGAGCGAACATTATGAATATGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCG 156218 | | |||| |||||||| | || ||||| || || | | ||||| || ||| Sbjct 4012062 GTGGCCCGAATATTATGAACAGATACACCAATCCCTCCAGCCGATTTACTGATAACAGCA 4012121 Query 156219 CATTCCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCAT 156265 || || || | | || | || || |||||| ||| |||| ||| Sbjct 4012122 CACTCTTTCAAGGCATCATATATGCCCTCAATACTATCTTCTTTCAT 4012168 >seq109 Length=8785251 Score = 105 bits (116), Expect = 2e-17 Identities = 340/514 (66%), Gaps = 28/514 (5%) Strand=Plus/Minus Query 288850 CTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGCT 288909 || ||||| || |||| | | || || | ||| || || || || | ||| ||||| Sbjct 6755167 CTGTCAAATCTTCCAGGCCTAAGCAAAGCAGAGTCCAAAATGTCTGCACGGTTAGTTGCC 6755108 Query 288910 GCCAATACAACAAT-AGATTCGG-TTTGCTT-AAATCCATCCATACTTGTTAAAATTTGA 288966 || | ||||||| | | || ||| ||| ||| |||||||| ||| || | ||| Sbjct 6755107 GCAA---CAACAATGATACCCGTATTTCCTTCAAAACCATCCATTTCTGTCAACAGCTGA 6755051 Query 288967 TTAAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATC--GCTCCttt 289024 ||||| || || ||||||||||||||| |||| | || | || | |||| | Sbjct 6755050 TTAAGGGTCTGCTCCCTTTCATCATTT---CCTCCT-------CCAATTCCAGTTCCTCT 6755001 Query 289025 ttttA--CCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGC 289082 | || || ||||||||||| |||| || | | || |||| ||| | | | || Sbjct 6755000 CTGCCGTCCCACGGCATCAATTTCATCAACAAAGACAATGCAGGGAGCATTCTCTTTGGC 6754941 Query 289083 --AATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAAT 289140 ||| ||| | || | || | ||| || |||| |||||| |||| || || || Sbjct 6754940 CTTCTTGAAAAGA--TCACGAACTCTGGAAGCACCAACACCAACGAACATCTCAACGAAC 6754883 Query 289141 TCAGAAGCGGATACTTGA-ATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAG 289199 |||||| | || | | || | || | ||| |||||| || || | |||| | || || Sbjct 6754882 TCAGAACCTGA-AATGGAGAAAAAAGGAACACCTGCTTCACCAGCAATTGCCTTGGCAAG 6754824 Query 289200 AAGTGTCTTACCTGTTCCAGGTGGTCCCTCTAATAGAACTCCCTTTGGTACTTTTGCCCC 289259 || || || || ||||| || || || ||| || || ||||| || | ||||| Sbjct 6754823 CAGCGTTTTTCCAGTTCCTGGAGGACCAACTAGAAGGACACCCTTAGGGATACGAGCCCC 6754764 Query 289260 AGCAGACTTATATTTCTCAGGGCTCTTTAAAAATTCTACAATTTCC-TCAAGTTCATATT 289318 | | | || | ||||||| |||||| ||| || || | |||| | ||| || | | Sbjct 6754763 AACTGCAGTAAACCTCTCAGGTTTCTTTAGAAACTCCACCACTTCCATGAAG-TCCTGCT 6754705 Query 289319 TTGCCTCATCACATCCTGCTACATCAGCAAAAGT 289352 | ||||||||| || || |||||| |||| || Sbjct 6754704 TGGCCTCATCAACACCAGCAACATCATCAAATGT 6754671 >seq45 Length=3313612 Score = 87.8 bits (96), Expect = 5e-12 Identities = 168/248 (68%), Gaps = 0/248 (0%) Strand=Plus/Minus Query 251413 CCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGACCCTTG 251472 ||||| || | |||||| ||||| || || ||||| | ||| | | || | ||| Sbjct 1755589 CCACATTTTTCACACACGTGGACTCTATATGCATCGCTTTGGTCGAACAACCTCTCTTTG 1755530 Query 251473 GTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGA 251532 || ||| || || || | |||||| ||||| | ||||| || || || || ||| Sbjct 1755529 AGAAAATGAGCGGCTCCATGAGCAATCATGCAATCTCTTTCCATCTCTCCAAATCGGAGA 1755470 Query 251533 CCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATG 251592 |||||||| |||| || ||||| |||||||| | || ||| | || |||||| Sbjct 1755469 CCACCATCTCGAGACCGTCCCTCAGCAGGCTGCCTTGTAAGAATTTGCACAGGACCCCGA 1755410 Query 251593 GAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCG 251652 ||| ||| |||||||| ||||| ||||| || | ||| || ||| ||||| Sbjct 1755409 CCACGGGAATGGATCTTATCATCCACCATGTGCTTAAGTCTCTGATAATATGTTGGACCC 1755350 Query 251653 ATGAAGAT 251660 | ||| || Sbjct 1755349 AGGAAAAT 1755342 >seq134 Length=15115857 Score = 86.0 bits (94), Expect = 2e-11 Identities = 102/136 (75%), Gaps = 3/136 (2%) Strand=Plus/Minus Query 301831 GGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATTCAGA 301890 ||||||||| | || ||||| ||| || || ||||||| ||||||| ||||| ||| Sbjct 13036688 GGAACACCAAGAGTGACGTTCT--TTGCACTCA-CACCAGCGTAGTGGAAGGTATTGAGA 13036632 Query 301891 GTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTCTCCT 301950 || | || || | ||||||||||||| |||||| |||| ||||| |||||| ||| Sbjct 13036631 GTCATCTGGGTGGCTGGCTCACCAATAGATTGTGCAGCAACACAACCAATCATTTCCCCT 13036572 Query 301951 GGTGCTACAATAGACT 301966 || || || | |||| Sbjct 13036571 GGAGCCACTAATGACT 13036556 >seq74 Length=10145792 Score = 84.2 bits (92), Expect = 6e-11 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 408951 TAACTCAGTTGGTTAGAGTGTCGGTCTTATGAGCCGAAAGTCGTGGGTTCGAGTCCCACA 409010 || ||||||||||||||| || |||||||||||||||| |||| ||||||||| ||| | Sbjct 3692518 TAGCTCAGTTGGTTAGAGCGTTGGTCTTATGAGCCGAAGGTCGCGGGTTCGAGCCCCGCC 3692459 Query 409011 TAGAACAtttttttAA 409026 || ||| ||||||| Sbjct 3692458 GGGACCATCTTTTTAA 3692443 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471131633650712