Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq161 271 9e-67 seq87 105 8e-17 seq134 87.8 2e-11 >seq161 Length=5110746 Score = 271 bits (300), Expect = 9e-67 Identities = 238/294 (81%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692 ||||||||||||||||||||||||||||||||||| ||||| | |||| | | ||| Sbjct 1384098 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGAGCTGG 1384039 Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752 |||||||||||||| ||| |||| ||||||||| |||||||||||| ||||||||| Sbjct 1384038 ACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 1383979 Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812 || || |||| ||| ||| |||||||||||||||||| |||| || ||||||| ||| Sbjct 1383978 AAGGCGAGGATGTGGGTGACGAAGTGGCGCTCGTCGTCGGTGAGGGAGTCCCAGTG-ACG 1383920 Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871 | | || | |||||| ||||||||||||||||||| |||||||||||||| ||||| Sbjct 1383919 GAGGTCCTGGGAGAGGTCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTA 1383860 Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925 ||||||||| | ||| |||| |||||||||| | | || |||| ||||| Sbjct 1383859 CATCTCCCAGATCTGCGGGTACTGGATAGGGAACATGCAGAAACGGTCCGGGTT 1383806 Score = 190 bits (210), Expect = 2e-42 Identities = 190/246 (77%), Gaps = 14/246 (6%) Strand=Plus/Minus Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269 |||| ||| || |||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 1384347 AAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCG 1384288 Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329 ||||| ||||||||||||||| ||| ||| ||| ||| |||||||| |||| ||| | Sbjct 1384287 GAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCGGCG 1384228 Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGC----AC 869385 || || || ||| | |||||||| ||||| | ||||||| || Sbjct 1384227 CC------GTCGACCCAGCGGAGGGCCCAGTCCGCCTT----GCGAGCGACGGCGGGGAC 1384178 Query 869386 CGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445 ||||||| ||||| |||||| ||||||| ||||| | ||||||||| ||||| |||| Sbjct 1384177 GGTGTCGACCGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTAGGTCTCGAG 1384118 Query 869446 CAGGAG 869451 ||||| Sbjct 1384117 GAGGAG 1384112 Score = 161 bits (178), Expect = 1e-33 Identities = 225/314 (72%), Gaps = 6/314 (2%) Strand=Plus/Minus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| |||||| || || ||| |||||| ||||||||||| |||| |||||||| Sbjct 1384692 GCCTTCTGGTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATG 1384633 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 | ||||||||| ||| ||||| || |||| ||| || | |||| | || Sbjct 1384632 AGCTCCATCCAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCCG 1384573 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || || ||||||||||| |||||||||||||||| ||||||| | |||||| || | Sbjct 1384572 AGGAGACGGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACC 1384513 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG---ACG 868927 || || ||| |||| |||| || ||||| ||||||| || ||||||||| ||| Sbjct 1384512 AGGGCGCACGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACG 1384453 Query 868928 ATGATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987 || | || || | ||| | ||||| | |||| || ||||||||||||| Sbjct 1384452 ATCCCCCGCACCCGCTCCTCGCTC---GGCTTCCTCTTCAGCAGCGAGTAGAGCAGGCAG 1384396 Query 868988 GCAAAGTCGCAGTG 869001 || ||||||||||| Sbjct 1384395 GCGAAGTCGCAGTG 1384382 >seq87 Length=12262769 Score = 105 bits (116), Expect = 8e-17 Identities = 147/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402 || ||||||| ||||| | | || ||||| ||||| ||||||||||| || | | || Sbjct 10869249 GCTTGGCCAGCTCGCCCGGTAGGACGAGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGA 10869308 Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462 | || |||||| || | || || || || ||| | ||| |||| | Sbjct 10869309 TGGTCGGCTTCTTGTTGTAGCGGGCGAGGCGCGAGGACTCCTGGGCGAGCTTCTCGAAGA 10869368 Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522 ||||||||| || |||||||| ||| | |||| |||||||||| | |||||||| Sbjct 10869369 TGTCGTTGATGAAGCTGTTCATGATGCCCATAGCCTTGCTGGAGATGCCGATGTCGGGGT 10869428 Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548 | |||||||||||||||||| ||||| Sbjct 10869429 GGACCTGCTTGAGCACCTTGAAGATG 10869454 >seq134 Length=15115857 Score = 87.8 bits (96), Expect = 2e-11 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245 || || |||||||| |||||||| ||| | || || |||| || | ||||| || Sbjct 12934342 GCTGCAAACTACCTGAACATCAAGAGCCTGTTGGACCTGACGTGCCAGACAGTGGCTGAC 12934401 Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||| ||||| | || |||||||| ||||||||||| ||||||||| Sbjct 12934402 ATGATCAAAAGCAAGACCCCTGAGGAGATACGCAAGACCTTCAACATCAAG 12934452 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6104154015091192