Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq161 271 9e-67
seq87 105 8e-17
seq134 87.8 2e-11
>seq161
Length=5110746
Score = 271 bits (300), Expect = 9e-67
Identities = 238/294 (81%), Gaps = 2/294 (1%)
Strand=Plus/Minus
Query 869633 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGG 869692
||||||||||||||||||||||||||||||||||| ||||| | |||| | | |||
Sbjct 1384098 GAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAGGCGCGGGCCTCGGAGAGCTGG 1384039
Query 869693 ACCTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAA 869752
|||||||||||||| ||| |||| ||||||||| |||||||||||| |||||||||
Sbjct 1384038 ACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCCGTCGGAGGCGGCGAAG 1383979
Query 869753 AAAGCCAGGACGTGCTTGATAAAGTGGCGCTCGTCGTCGCTGAGCGACACCCAGTGGACG 869812
|| || |||| ||| ||| |||||||||||||||||| |||| || ||||||| |||
Sbjct 1383978 AAGGCGAGGATGTGGGTGACGAAGTGGCGCTCGTCGTCGGTGAGGGAGTCCCAGTG-ACG 1383920
Query 869813 GTG-TCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCTTTTTGTA 869871
| | || | |||||| ||||||||||||||||||| |||||||||||||| |||||
Sbjct 1383919 GAGGTCCTGGGAGAGGTCAACCTCCTCGGCGGTCCAGAAGGAGGCCTCGGCCTTCTTGTA 1383860
Query 869872 CATCTCCCATACTTGCTGGTAGCGGATAGGGAAGAGGACAAAGCGGTTGGGGTT 869925
||||||||| | ||| |||| |||||||||| | | || |||| |||||
Sbjct 1383859 CATCTCCCAGATCTGCGGGTACTGGATAGGGAACATGCAGAAACGGTCCGGGTT 1383806
Score = 190 bits (210), Expect = 2e-42
Identities = 190/246 (77%), Gaps = 14/246 (6%)
Strand=Plus/Minus
Query 869210 AAGGCGAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCC 869269
|||| ||| || |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1384347 AAGGTGAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCG 1384288
Query 869270 GAGAAAAAGATGCCCTCGACGGCGGCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGG 869329
||||| ||||||||||||||| ||| ||| ||| ||| |||||||| |||| ||| |
Sbjct 1384287 GAGAAGAAGATGCCCTCGACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCGGCG 1384228
Query 869330 CCCTCCTTGTTGATCCACTTCATCGCCCAGTCGGCCTTTTTCCTCACCGACGGC----AC 869385
|| || || ||| | |||||||| ||||| | ||||||| ||
Sbjct 1384227 CC------GTCGACCCAGCGGAGGGCCCAGTCCGCCTT----GCGAGCGACGGCGGGGAC 1384178
Query 869386 CGTGTCGATGGCGCGAAAGAGGTGGTCCTTTTCGGCCGGGTCCTTGACATAGGTGTCGAT 869445
||||||| ||||| |||||| ||||||| ||||| | ||||||||| ||||| ||||
Sbjct 1384177 GGTGTCGACCGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTAGGTCTCGAG 1384118
Query 869446 CAGGAG 869451
|||||
Sbjct 1384117 GAGGAG 1384112
Score = 161 bits (178), Expect = 1e-33
Identities = 225/314 (72%), Gaps = 6/314 (2%)
Strand=Plus/Minus
Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750
||||| |||||| || || ||| |||||| ||||||||||| |||| ||||||||
Sbjct 1384692 GCCTTCTGGTACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATG 1384633
Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810
| ||||||||| ||| ||||| || |||| ||| || | |||| | ||
Sbjct 1384632 AGCTCCATCCAGTCGAAGGGGTTCGGGACGCTGTACATCTTCCCGTAGTCGAGGGCGCCG 1384573
Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870
|| || ||||||||||| |||||||||||||||| ||||||| | |||||| || |
Sbjct 1384572 AGGAGACGGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACC 1384513
Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCG---ACG 868927
|| || ||| |||| |||| || ||||| ||||||| || ||||||||| |||
Sbjct 1384512 AGGGCGCACGGGAGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACG 1384453
Query 868928 ATGATCTGCCTGGGCACGTCGGCCGAGGGCTTGTTGACGAGCATCGTGTAGAGCAGGCAG 868987
|| | || || | ||| | ||||| | |||| || |||||||||||||
Sbjct 1384452 ATCCCCCGCACCCGCTCCTCGCTC---GGCTTCCTCTTCAGCAGCGAGTAGAGCAGGCAG 1384396
Query 868988 GCAAAGTCGCAGTG 869001
|| |||||||||||
Sbjct 1384395 GCGAAGTCGCAGTG 1384382
>seq87
Length=12262769
Score = 105 bits (116), Expect = 8e-17
Identities = 147/206 (71%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 1254343 GCCTGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGA 1254402
|| ||||||| ||||| | | || ||||| ||||| ||||||||||| || | | ||
Sbjct 10869249 GCTTGGCCAGCTCGCCCGGTAGGACGAGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGA 10869308
Query 1254403 TCGTGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCA 1254462
| || |||||| || | || || || || ||| | ||| |||| |
Sbjct 10869309 TGGTCGGCTTCTTGTTGTAGCGGGCGAGGCGCGAGGACTCCTGGGCGAGCTTCTCGAAGA 10869368
Query 1254463 TGTCGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGT 1254522
||||||||| || |||||||| ||| | |||| |||||||||| | ||||||||
Sbjct 10869369 TGTCGTTGATGAAGCTGTTCATGATGCCCATAGCCTTGCTGGAGATGCCGATGTCGGGGT 10869428
Query 1254523 GCACCTGCTTGAGCACCTTGTAGATG 1254548
| |||||||||||||||||| |||||
Sbjct 10869429 GGACCTGCTTGAGCACCTTGAAGATG 10869454
>seq134
Length=15115857
Score = 87.8 bits (96), Expect = 2e-11
Identities = 86/111 (77%), Gaps = 0/111 (0%)
Strand=Plus/Plus
Query 1592186 GCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAAC 1592245
|| || |||||||| |||||||| ||| | || || |||| || | ||||| ||
Sbjct 12934342 GCTGCAAACTACCTGAACATCAAGAGCCTGTTGGACCTGACGTGCCAGACAGTGGCTGAC 12934401
Query 1592246 ATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296
|||||||| ||||| | || |||||||| ||||||||||| |||||||||
Sbjct 12934402 ATGATCAAAAGCAAGACCCCTGAGGAGATACGCAAGACCTTCAACATCAAG 12934452
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6104154015091192
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |