Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_021924.1
Length=129052
Score E
Sequences producing significant alignments: (Bits) Value
seq49 105 6e-18
seq652 96.9 3e-15
>seq49
Length=4798478
Score = 105 bits (116), Expect = 6e-18
Identities = 152/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328
||||||||| ||||| || || | || || ||||| || || | ||| ||| |
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
|||| || ||| | | || ||| ||| ||| ||||| |||||| | ||| |||
Sbjct 2840917 TGAC---ACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGA 2840973
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| || || ||||||| ||| || |||||||| || |||| || || ||||||||||
Sbjct 2840974 TCAGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTA 2841033
Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||| || ||||| || || | ||| ||||
Sbjct 2841034 CAACATCCAGAAAGAGTCCACTCTTCACTTGGT 2841066
Score = 105 bits (116), Expect = 6e-18
Identities = 152/213 (71%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328
||||||||| |||||||| || | || || ||||| || || | ||| ||| |
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
|||| ||| ||| | | || ||| || ||| |||||||||||| | ||| |||
Sbjct 2869973 TGAC---ACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGA 2870029
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| || || ||||||| ||| || |||||||| || |||| || || |||| |||||
Sbjct 2870030 TCAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTA 2870089
Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481
||||| || ||||| || || | ||| ||||
Sbjct 2870090 TAACATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122
Score = 96.9 bits (106), Expect = 3e-15
Identities = 150/213 (70%), Gaps = 6/213 (3%)
Strand=Plus/Plus
Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328
||||||||| ||||| || || | || || ||||| || || | ||| ||| |
Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904
Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388
|||| || ||| | | || ||| || ||| ||||| |||||| | ||| |||
Sbjct 2846905 TGAC---ACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGA 2846961
Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448
||| || || ||||||| ||| || |||||||| || |||| || || ||||||||||
Sbjct 2846962 TCAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTA 2847021
Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||| || || || || || | ||| ||||
Sbjct 2847022 CAACATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054
Score = 86.0 bits (94), Expect = 5e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326
||| | |||||||| ||||| |||||| | || ||||| ||||| ||| | || |||
Sbjct 2839940 TTTCAGATGCAAATCTTTGTGAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAG 2839999
Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386
| || || ||| | | ||||| |||||| ||||| || || | |
Sbjct 2840000 AGTTCAGACACAATCGACAATGTAAAGGCCAAGATTCAAGACAAGGAGGGAATCACTCCT 2840059
Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446
|| || ||||| || || | ||| ||||| ||||| ||||||| | || |||| |||
Sbjct 2840060 GACCAGCAAAGGCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGGCGCACTTTGGCTGAT 2840119
Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||||| || || ||||| || | ||| ||||
Sbjct 2840120 TACAACATCCAGAAGGAATCAACCCTACACTTGGT 2840154
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332
||||| || ||||| || ||| | |||||||| |||||||| | || |||| | |
Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745
Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392
||||| | | | | || || || || ||||||||||| | ||| || ||
Sbjct 2869746 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACCAG 2869805
Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452
|| | | |||| ||| || || || || ||||||| | | ||| | ||||| ||||||
Sbjct 2869806 CAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACAAC 2869865
Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481
|| ||||| ||||| || | ||| ||||
Sbjct 2869866 ATCCAAAAGGAATCCACCCTTCACTTGGT 2869894
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326
||| | |||||||| || || |||||| | || ||||| ||||| ||| | || |||
Sbjct 2845746 TTTCAGATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAG 2845805
Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386
| || || | | | | ||||| ||||| ||||| || || | |||
Sbjct 2845806 AGTTCAGACACAATTGACAATGTAAAGGCCAAGATACAAGACAAGGAGGGAATTCCCCCT 2845865
Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446
|| || ||||| || || | ||| || || ||||||||||||| | || |||| |||
Sbjct 2845866 GACCAGCAAAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACTTTGGCTGAT 2845925
Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||||| || || ||||| || | ||| ||||
Sbjct 2845926 TACAACATCCAGAAGGAATCAACCCTACACTTGGT 2845960
Score = 82.4 bits (90), Expect = 6e-11
Identities = 147/215 (68%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326
||| | ||||| || ||||| |||||| | || ||||| ||||| ||| | || |||
Sbjct 2869224 TTTCAGATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAG 2869283
Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386
| || || ||| | | ||||| |||||| ||||| || || | ||
Sbjct 2869284 AGTTCAGACACAATCGACAATGTAAAGGCCAAGATTCAAGACAAGGAGGGAATCCCTCCT 2869343
Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446
|| || ||||| || || | ||| || || ||||| ||||||| | || |||| |||
Sbjct 2869344 GACCAGCAAAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACTTTGGCTGAT 2869403
Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481
|||||||| || || ||||| || | ||| ||||
Sbjct 2869404 TACAACATCCAGAAGGAATCAACCCTACACTTGGT 2869438
>seq652
Length=2384379
Score = 96.9 bits (106), Expect = 3e-15
Identities = 143/199 (72%), Gaps = 4/199 (2%)
Strand=Plus/Plus
Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330
||||| ||||||||||| || | ||||| || ||||| || | ||| || |||| |
Sbjct 465286 ATGCAGATATTTGTCAAGACCCTTACCGGGAAGACCATAACTTTGGAAGTCGAGAGCTCG 465345
Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390
||||| || | | || ||| ||||| ||||| |||||| | ||| ||||
Sbjct 465346 --GATACCGTTGATAATGTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATC 465403
Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450
| || || | |||| ||| || || ||||| ||||||| | | ||| ||||||||||||
Sbjct 465404 AGCAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAGGATGGCCGGACACTGGCGGATTACA 465463
Query 110451 ACATTCAAAAAGAATCTAC 110469
|||| ||||| || || ||
Sbjct 465464 ACATCCAAAAGGAGTCAAC 465482
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 412658573901368
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |