Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq49 105 6e-18 seq652 96.9 3e-15 >seq49 Length=4798478 Score = 105 bits (116), Expect = 6e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||| ||||| || || | || || ||||| || || | ||| ||| | Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || ||| ||| ||| ||||| |||||| | ||| ||| Sbjct 2840917 TGAC---ACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGA 2840973 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || ||||||| ||| || |||||||| || |||| || || |||||||||| Sbjct 2840974 TCAGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTA 2841033 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| || ||||| || || | ||| |||| Sbjct 2841034 CAACATCCAGAAAGAGTCCACTCTTCACTTGGT 2841066 Score = 105 bits (116), Expect = 6e-18 Identities = 152/213 (71%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||| |||||||| || | || || ||||| || || | ||| ||| | Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| ||| ||| | | || ||| || ||| |||||||||||| | ||| ||| Sbjct 2869973 TGAC---ACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGA 2870029 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || ||||||| ||| || |||||||| || |||| || || |||| ||||| Sbjct 2870030 TCAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTA 2870089 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 ||||| || ||||| || || | ||| |||| Sbjct 2870090 TAACATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Plus Query 110272 AATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGC---C 110328 ||||||||| ||||| || || | || || ||||| || || | ||| ||| | Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904 Query 110329 TGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGA 110388 |||| || ||| | | || ||| || ||| ||||| |||||| | ||| ||| Sbjct 2846905 TGAC---ACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGA 2846961 Query 110389 TCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTA 110448 ||| || || ||||||| ||| || |||||||| || |||| || || |||||||||| Sbjct 2846962 TCAGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTA 2847021 Query 110449 CAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||| || || || || || | ||| |||| Sbjct 2847022 CAACATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 ||| | |||||||| ||||| |||||| | || ||||| ||||| ||| | || ||| Sbjct 2839940 TTTCAGATGCAAATCTTTGTGAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAG 2839999 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 | || || ||| | | ||||| |||||| ||||| || || | | Sbjct 2840000 AGTTCAGACACAATCGACAATGTAAAGGCCAAGATTCAAGACAAGGAGGGAATCACTCCT 2840059 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || || ||||| || || | ||| ||||| ||||| ||||||| | || |||| ||| Sbjct 2840060 GACCAGCAAAGGCTCATCTTTGCTGGTAAGCAGCTCGAGGATGGGCGCACTTTGGCTGAT 2840119 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || ||||| || | ||| |||| Sbjct 2840120 TACAACATCCAGAAGGAATCAACCCTACACTTGGT 2840154 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 ||||| || ||||| || ||| | |||||||| |||||||| | || |||| | | Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 ||||| | | | | || || || || ||||||||||| | ||| || || Sbjct 2869746 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACCAG 2869805 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || | | |||| ||| || || || || ||||||| | | ||| | ||||| |||||| Sbjct 2869806 CAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACAAC 2869865 Query 110453 ATTCAAAAAGAATCTACGTTGCACATGGT 110481 || ||||| ||||| || | ||| |||| Sbjct 2869866 ATCCAAAAGGAATCCACCCTTCACTTGGT 2869894 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 ||| | |||||||| || || |||||| | || ||||| ||||| ||| | || ||| Sbjct 2845746 TTTCAGATGCAAATCTTCGTGAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAG 2845805 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 | || || | | | | ||||| ||||| ||||| || || | ||| Sbjct 2845806 AGTTCAGACACAATTGACAATGTAAAGGCCAAGATACAAGACAAGGAGGGAATTCCCCCT 2845865 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || || ||||| || || | ||| || || ||||||||||||| | || |||| ||| Sbjct 2845866 GACCAGCAAAGGCTCATCTTTGCTGGCAAGCAGCTGGAGGATGGGCGCACTTTGGCTGAT 2845925 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || ||||| || | ||| |||| Sbjct 2845926 TACAACATCCAGAAGGAATCAACCCTACACTTGGT 2845960 Score = 82.4 bits (90), Expect = 6e-11 Identities = 147/215 (68%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 110267 TTTAAAATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAG 110326 ||| | ||||| || ||||| |||||| | || ||||| ||||| ||| | || ||| Sbjct 2869224 TTTCAGATGCAGATCTTTGTGAAAACTCTTACTGGCAAGACCATCACCCTTGAGGTTGAG 2869283 Query 110327 CCTGACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTG 110386 | || || ||| | | ||||| |||||| ||||| || || | || Sbjct 2869284 AGTTCAGACACAATCGACAATGTAAAGGCCAAGATTCAAGACAAGGAGGGAATCCCTCCT 2869343 Query 110387 GATCAACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGAT 110446 || || ||||| || || | ||| || || ||||| ||||||| | || |||| ||| Sbjct 2869344 GACCAGCAAAGGCTCATCTTTGCTGGCAAGCAGCTCGAGGATGGGCGCACTTTGGCTGAT 2869403 Query 110447 TACAACATTCAAAAAGAATCTACGTTGCACATGGT 110481 |||||||| || || ||||| || | ||| |||| Sbjct 2869404 TACAACATCCAGAAGGAATCAACCCTACACTTGGT 2869438 >seq652 Length=2384379 Score = 96.9 bits (106), Expect = 3e-15 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAA-CG-GAGCCTG 110330 ||||| ||||||||||| || | ||||| || ||||| || | ||| || |||| | Sbjct 465286 ATGCAGATATTTGTCAAGACCCTTACCGGGAAGACCATAACTTTGGAAGTCGAGAGCTCG 465345 Query 110331 ACGATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATC 110390 ||||| || | | || ||| ||||| ||||| |||||| | ||| |||| Sbjct 465346 --GATACCGTTGATAATGTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATC 465403 Query 110391 AACAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACA 110450 | || || | |||| ||| || || ||||| ||||||| | | ||| |||||||||||| Sbjct 465404 AGCAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAGGATGGCCGGACACTGGCGGATTACA 465463 Query 110451 ACATTCAAAAAGAATCTAC 110469 |||| ||||| || || || Sbjct 465464 ACATCCAAAAGGAGTCAAC 465482 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412658573901368