Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq161 233 3e-55 seq87 161 2e-33 seq74 134 2e-25 seq85 125 1e-22 >seq161 Length=5110746 Score = 233 bits (258), Expect = 3e-55 Identities = 225/289 (78%), Gaps = 6/289 (2%) Strand=Plus/Minus Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435 ||| || |||||||||||||||||||||||||| |||||||| ||||||||||| ||||| Sbjct 1384342 GAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAA 1384283 Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495 ||||||||||||||| ||| ||| ||| ||| |||||||| || | || ||| || Sbjct 1384282 GAAGATGCCCTCGACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCGGCGCCGTC 1384223 Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555 || ||| | ||||| || ||||| || | ||| || ||||||| Sbjct 1384222 ------GACCCAGCGGAGGGCCCAGTCCGCCTTGCGAGCGACGGCGGGGACGGTGTCGAC 1384169 Query 794556 GGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615 ||||| |||||| ||||||||||| | | ||||||||||||||| |||| |||||| Sbjct 1384168 CGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTAGGTCTCGAGGAGGAGGCT 1384109 Query 794616 GTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664 ||| |||| ||||||||||| |||||||||||||||||||| || ||| Sbjct 1384108 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAG 1384060 Score = 224 bits (248), Expect = 2e-52 Identities = 190/231 (82%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208 |||||||| | ||||||||||||||||||||| |||| |||||||| |||||||| Sbjct 1384054 GGCCTCGGAGAGCTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCC 1383995 Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268 |||| ||||||||| |||||||||| ||| ||| ||||| |||||||||||| |||| Sbjct 1383994 GTCGGAGGCGGCGAAGAAGGCGAGGATGTGGGTGACGAAGTGGCGCTCGTCGTCGGTGAG 1383935 Query 796269 CGAGACCCAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327 ||| |||||| ||| | ||| | |||||| ||||||||||||||||| ||||||| Sbjct 1383934 GGAGTCCCAGT-GACGGAGGTCCTGGGAGAGGTCAACCTCCTCGGCGGTCCAGAAGGAGG 1383876 Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378 |||||||||| |||||||||||||| ||| | |||| |||| ||||||| Sbjct 1383875 CCTCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTACTGGATAGGGAACA 1383825 Score = 150 bits (166), Expect = 3e-30 Identities = 227/313 (73%), Gaps = 10/313 (3%) Strand=Plus/Minus Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967 ||||| || || ||| |||||| ||||||||||| |||| |||||||| | ||||||| Sbjct 1384683 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 1384624 Query 793968 CACGGGAACGGGTT--GGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGC 794025 || ||| ||||| || || ||| |||| || | |||| | | || || | Sbjct 1384623 CAGTCGAAGGGGTTCGGGACGCT--GTACATCTTCCCGTAGTCGAGGGCGCCGAGGAGAC 1384566 Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-C 794084 ||||||||||||| || |||||||||| ||||||| | |||||| || | || || | Sbjct 1384565 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGC 1384506 Query 794085 ACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGC 794144 ||||| |||| |||| ||| ||||| ||||||| || ||||||||| | |||| | Sbjct 1384505 ACGGG-AGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATC-CC 1384448 Query 794145 CTGGGCACG-TCGGACGACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202 | | | || || |||||| || | |||| || ||||||||||||||| |||| Sbjct 1384447 CCGCACCCGCTCCTCGCTCGGCTTCCTCTTC-AGCAGCGAGTAGAGCAGGCAGGCGAAGT 1384389 Query 794203 CGCAATGCAGACC 794215 |||| || || || Sbjct 1384388 CGCAGTGGAGGCC 1384376 >seq87 Length=12262769 Score = 161 bits (178), Expect = 2e-33 Identities = 176/234 (75%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||||||||||||||| ||||| |||||||||||| ||||||| ||||| | | || Sbjct 10869215 TTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCCGGTAGGACG 10869274 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 ||||| ||||| ||||||||||| |||| | ||| || |||||| ||| || Sbjct 10869275 AGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGATGGTCGGCTTCTTGTTGTAGCGGGCG 10869334 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 ||||| || ||| | ||| |||| |||||||||| || ||||||||| Sbjct 10869335 AGGCGCGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATG 10869394 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| |||||||||| | ||||||||| |||||||||||||||||| Sbjct 10869395 CCCATAGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGCACCTTG 10869448 >seq74 Length=10145792 Score = 134 bits (148), Expect = 2e-25 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534 ||||| ||||||||||| ||||| |||||||||||| |||| || ||||| | | || Sbjct 4487325 TTGGTCACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCGCCCGGGAGGACG 4487384 Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594 || || ||||| ||||||||||| |||| | |||||| |||||| | || Sbjct 4487385 AGCCGGACGGCTGTCTGGATCTCCCGGGAGGTGATCGTCGGCTTCTTGTTGTACCTGGCG 4487444 Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654 |||||| || ||| | ||| |||| |||||||||| || ||||||||| Sbjct 4487445 AGGCGGGAGGACTCCTGGGCGAGTTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATG 4487504 Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 ||| | ||| ||||||| || | ||| ||||| |||||||| ||||||||| Sbjct 4487505 CCCATGGCCTTGCTGGAGATCCCGATGTCCGGGTGGACCTGCTTCAGCACCTTG 4487558 Score = 132 bits (146), Expect = 8e-25 Identities = 175/243 (72%), Gaps = 0/243 (0%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| ||||||||||| ||||| |||||||||||| |||| || |||||| | | Sbjct 4509495 TGAACTTGGTCACGGCCTTGGTTCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 4509554 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | || || || |||||||||||||| |||| | |||||| |||||| | Sbjct 4509555 GCACGAGCCGGACCGCGGTCTGGATCTCCCGGGAGGTGATCGTCGGCTTCTTGTTGTACC 4509614 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||| || | | |||||| | ||| |||| || ||||||| || ||||| Sbjct 4509615 TCGCGAGCCTGGAGGCCTCTTGGGCGAGCTTCTCGAAGATATCGTTGATGAAGCTGTTCA 4509674 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 |||| ||| | ||| ||||||| || | ||| || || |||||||| ||||||||| Sbjct 4509675 TGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGATGGACCTGCTTCAGCACCTTGA 4509734 Query 1485710 AAA 1485712 ||| Sbjct 4509735 AAA 4509737 Score = 129 bits (142), Expect = 9e-24 Identities = 179/244 (73%), Gaps = 10/244 (4%) Strand=Plus/Plus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || ||||| || ||||| |||||||||||| |||| || |||||| | | Sbjct 4504684 TGAACTTGGTCACCGCCTTCGTTCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 4504743 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || || |||||||||||||| |||| |||| |||| |||| || || Sbjct 4504744 GCACCAGCCGGACCGCGGTCTGGATCTCCCGGGAAGTGATC--GTTG-GCTTCTT-GT-T 4504798 Query 1485590 GCGCCAGGCG-GCC----GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644 | || |||| ||| |||||| | ||| |||| |||||||||| || Sbjct 4504799 GTACCTGGCGAGCCTAGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCT 4504858 Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704 ||||||||| ||| | ||| ||||||| || | ||||||||| |||||||| ||||| Sbjct 4504859 GTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCGGGGTGAACCTGCTTCAGCAC 4504918 Query 1485705 CTTG 1485708 |||| Sbjct 4504919 CTTG 4504922 >seq85 Length=5226098 Score = 125 bits (138), Expect = 1e-22 Identities = 171/239 (72%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 || ||||||| || |||||||| ||||| || ||||||||| |||| || |||||| | | Sbjct 2853556 TGAACTTGGTCACCGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCGAGCTCGCCGGGGA 2853497 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||||| ||||| ||||||||||| |||| | ||| || |||||| || Sbjct 2853496 GCACGAGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGATGGTCGGCTTCTTGTTGTAGC 2853437 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 |||| || || | ||| ||| | |||| |||||||||| || ||||| Sbjct 2853436 GCGCGAGCCGCGACGACTCCTGGCCCAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 2853377 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708 |||| ||| | ||| | |||||||| | ||| ||||| |||||||| |||||| || Sbjct 2853376 TGATGCCCATGGCCTTGCTCGAGATGCCGATGTCCGGGTGGACCTGCTTCAGCACCCTG 2853318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7912376918969064