Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq161 233 3e-55
seq87 161 2e-33
seq74 134 2e-25
seq85 125 1e-22
>seq161
Length=5110746
Score = 233 bits (258), Expect = 3e-55
Identities = 225/289 (78%), Gaps = 6/289 (2%)
Strand=Plus/Minus
Query 794376 GAGGCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAA 794435
||| || |||||||||||||||||||||||||| |||||||| ||||||||||| |||||
Sbjct 1384342 GAGCCCCGGCATGAGGCCGCGCTTCTTGAGCCAGAAGATGGCGCAGAAACTGCCGGAGAA 1384283
Query 794436 AAAGATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTC 794495
||||||||||||||| ||| ||| ||| ||| |||||||| || | || ||| ||
Sbjct 1384282 GAAGATGCCCTCGACGCAGGCGAAGGCGAGGAGGCGCTCGGCGAAGGACTCGGCGCCGTC 1384223
Query 794496 TTTGTTGATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGAT 794555
|| ||| | ||||| || ||||| || | ||| || |||||||
Sbjct 1384222 ------GACCCAGCGGAGGGCCCAGTCCGCCTTGCGAGCGACGGCGGGGACGGTGTCGAC 1384169
Query 794556 GGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATGAGGAGCGA 794615
||||| |||||| ||||||||||| | | ||||||||||||||| |||| ||||||
Sbjct 1384168 CGCGCGGAAGAGGCGGTCCTTCTCGGCGGAGTCCTTGACGTAGGTCTCGAGGAGGAGGCT 1384109
Query 794616 GTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAG 794664
||| |||| ||||||||||| |||||||||||||||||||| || |||
Sbjct 1384108 GTACATCTCGGAGTGGATGTTCTCGATGGCGATCTGGAAGCCGTAGAAG 1384060
Score = 224 bits (248), Expect = 2e-52
Identities = 190/231 (82%), Gaps = 2/231 (1%)
Strand=Plus/Minus
Query 796149 GGCCTCGGGTACTTGGACCTCCTTCATGAAGCGGCCGGCCAGGTTCTCAGCCACGATGCC 796208
|||||||| | ||||||||||||||||||||| |||| |||||||| ||||||||
Sbjct 1384054 GGCCTCGGAGAGCTGGACCTCCTTCATGAAGCGGACGGCGAGGTTCTCGAGGACGATGCC 1383995
Query 796209 GTCGCTGGCGGCGAAAAAGGCGAGGACGTGCTTGATAAAGTGACGCTCGTCGTCGCTGAG 796268
|||| ||||||||| |||||||||| ||| ||| ||||| |||||||||||| ||||
Sbjct 1383994 GTCGGAGGCGGCGAAGAAGGCGAGGATGTGGGTGACGAAGTGGCGCTCGTCGTCGGTGAG 1383935
Query 796269 CGAGACCCAGTGGACCG-TGTCGGCGCCGAGGTCGACCTCCTCGGCGGTCCAAAAGGAGG 796327
||| |||||| ||| | ||| | |||||| ||||||||||||||||| |||||||
Sbjct 1383934 GGAGTCCCAGT-GACGGAGGTCCTGGGAGAGGTCAACCTCCTCGGCGGTCCAGAAGGAGG 1383876
Query 796328 CCTCGGCCTTTTTGTACATCTCCCATATCCGTTGGTAGCGGATGGGGAACA 796378
|||||||||| |||||||||||||| ||| | |||| |||| |||||||
Sbjct 1383875 CCTCGGCCTTCTTGTACATCTCCCAGATCTGCGGGTACTGGATAGGGAACA 1383825
Score = 150 bits (166), Expect = 3e-30
Identities = 227/313 (73%), Gaps = 10/313 (3%)
Strand=Plus/Minus
Query 793908 TACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATCAACTCCATC 793967
||||| || || ||| |||||| ||||||||||| |||| |||||||| | |||||||
Sbjct 1384683 TACTCCCCGACCCGCTTCTCGAAGAAGTTGGTCTTCCCCTGCAGCGAGATGAGCTCCATC 1384624
Query 793968 CACGGGAACGGGTT--GGCCGTCAGGTAGTGCTTCTCGCACCCGAGCGACGCAAGCAGGC 794025
|| ||| ||||| || || ||| |||| || | |||| | | || || |
Sbjct 1384623 CAGTCGAAGGGGTTCGGGACGCT--GTACATCTTCCCGTAGTCGAGGGCGCCGAGGAGAC 1384566
Query 794026 GGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTTCATGCCGATGAGCGC-C 794084
||||||||||||| || |||||||||| ||||||| | |||||| || | || || |
Sbjct 1384565 GGTCGGCGACGAACTCGATGTACTGGCCCATGAGGTCCCGGTTCATCCCCACCAGGGCGC 1384506
Query 794085 ACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGCCTCGATGATGATCTGC 794144
||||| |||| |||| ||| ||||| ||||||| || ||||||||| | |||| |
Sbjct 1384505 ACGGG-AGCGCGTCGCAGACGAACTCCCTCTCGATGTCCACGGCCTCGCGCACGATC-CC 1384448
Query 794145 CTGGGCACG-TCGGACGACGGCTT-GTCGACGAGCATCGTGTAGAGCAGGCAGGCAAAGT 794202
| | | || || |||||| || | |||| || ||||||||||||||| ||||
Sbjct 1384447 CCGCACCCGCTCCTCGCTCGGCTTCCTCTTC-AGCAGCGAGTAGAGCAGGCAGGCGAAGT 1384389
Query 794203 CGCAATGCAGACC 794215
|||| || || ||
Sbjct 1384388 CGCAGTGGAGGCC 1384376
>seq87
Length=12262769
Score = 161 bits (178), Expect = 2e-33
Identities = 176/234 (75%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534
||||||||||||||||| ||||| |||||||||||| ||||||| ||||| | | ||
Sbjct 10869215 TTGGTGACGGCCTTGGTGCCCTCGGAGACGGCGTGCTTGGCCAGCTCGCCCGGTAGGACG 10869274
Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594
||||| ||||| ||||||||||| |||| | ||| || |||||| ||| ||
Sbjct 10869275 AGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGATGGTCGGCTTCTTGTTGTAGCGGGCG 10869334
Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654
||||| || ||| | ||| |||| |||||||||| || |||||||||
Sbjct 10869335 AGGCGCGAGGACTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATG 10869394
Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||| | ||| |||||||||| | ||||||||| ||||||||||||||||||
Sbjct 10869395 CCCATAGCCTTGCTGGAGATGCCGATGTCGGGGTGGACCTGCTTGAGCACCTTG 10869448
>seq74
Length=10145792
Score = 134 bits (148), Expect = 2e-25
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 1485475 TTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCATGATC 1485534
||||| ||||||||||| ||||| |||||||||||| |||| || ||||| | | ||
Sbjct 4487325 TTGGTCACGGCCTTGGTGCCCTCAGAGACGGCGTGCTTGGCGAGCTCGCCCGGGAGGACG 4487384
Query 1485535 AGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCGCGCC 1485594
|| || ||||| ||||||||||| |||| | |||||| |||||| | ||
Sbjct 4487385 AGCCGGACGGCTGTCTGGATCTCCCGGGAGGTGATCGTCGGCTTCTTGTTGTACCTGGCG 4487444
Query 1485595 AGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCATGATC 1485654
|||||| || ||| | ||| |||| |||||||||| || |||||||||
Sbjct 4487445 AGGCGGGAGGACTCCTGGGCGAGTTTCTCGAAGATGTCGTTGATGAAGCTGTTCATGATG 4487504
Query 1485655 GACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
||| | ||| ||||||| || | ||| ||||| |||||||| |||||||||
Sbjct 4487505 CCCATGGCCTTGCTGGAGATCCCGATGTCCGGGTGGACCTGCTTCAGCACCTTG 4487558
Score = 132 bits (146), Expect = 8e-25
Identities = 175/243 (72%), Gaps = 0/243 (0%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| ||||||| ||||||||||| ||||| |||||||||||| |||| || |||||| | |
Sbjct 4509495 TGAACTTGGTCACGGCCTTGGTTCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 4509554
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| || || || |||||||||||||| |||| | |||||| |||||| |
Sbjct 4509555 GCACGAGCCGGACCGCGGTCTGGATCTCCCGGGAGGTGATCGTCGGCTTCTTGTTGTACC 4509614
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
||| || | | |||||| | ||| |||| || ||||||| || |||||
Sbjct 4509615 TCGCGAGCCTGGAGGCCTCTTGGGCGAGCTTCTCGAAGATATCGTTGATGAAGCTGTTCA 4509674
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
|||| ||| | ||| ||||||| || | ||| || || |||||||| |||||||||
Sbjct 4509675 TGATGCCCATGGCCTTGCTGGAGATCCCGATGTCCGGATGGACCTGCTTCAGCACCTTGA 4509734
Query 1485710 AAA 1485712
|||
Sbjct 4509735 AAA 4509737
Score = 129 bits (142), Expect = 9e-24
Identities = 179/244 (73%), Gaps = 10/244 (4%)
Strand=Plus/Plus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| ||||||| || ||||| || ||||| |||||||||||| |||| || |||||| | |
Sbjct 4504684 TGAACTTGGTCACCGCCTTCGTTCCCTCGGAGACGGCGTGCTTGGCGAGCTCGCCGGGGA 4504743
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| || || |||||||||||||| |||| |||| |||| |||| || ||
Sbjct 4504744 GCACCAGCCGGACCGCGGTCTGGATCTCCCGGGAAGTGATC--GTTG-GCTTCTT-GT-T 4504798
Query 1485590 GCGCCAGGCG-GCC----GGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGA 1485644
| || |||| ||| |||||| | ||| |||| |||||||||| ||
Sbjct 4504799 GTACCTGGCGAGCCTAGAGGCCTCCTGGGCGAGCTTCTCGAAGATGTCGTTGATGAAGCT 4504858
Query 1485645 GTTCATGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCAC 1485704
||||||||| ||| | ||| ||||||| || | ||||||||| |||||||| |||||
Sbjct 4504859 GTTCATGATGCCCATGGCCTTGCTGGAGATCCCGATGTCGGGGTGAACCTGCTTCAGCAC 4504918
Query 1485705 CTTG 1485708
||||
Sbjct 4504919 CTTG 4504922
>seq85
Length=5226098
Score = 125 bits (138), Expect = 1e-22
Identities = 171/239 (72%), Gaps = 0/239 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
|| ||||||| || |||||||| ||||| || ||||||||| |||| || |||||| | |
Sbjct 2853556 TGAACTTGGTCACCGCCTTGGTGCCCTCCGACACGGCGTGCTTGGCGAGCTCGCCGGGGA 2853497
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||||| ||||| ||||||||||| |||| | ||| || |||||| ||
Sbjct 2853496 GCACGAGGCGGACGGCCGTCTGGATCTCCCGGGAGGTGATGGTCGGCTTCTTGTTGTAGC 2853437
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
|||| || || | ||| ||| | |||| |||||||||| || |||||
Sbjct 2853436 GCGCGAGCCGCGACGACTCCTGGCCCAGCTTCTCGAAGATGTCGTTGATGAAGCTGTTCA 2853377
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTG 1485708
|||| ||| | ||| | |||||||| | ||| ||||| |||||||| |||||| ||
Sbjct 2853376 TGATGCCCATGGCCTTGCTCGAGATGCCGATGTCCGGGTGGACCTGCTTCAGCACCCTG 2853318
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7912376918969064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |