Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq49 107 2e-18 seq203 96.9 3e-15 seq652 93.3 3e-14 >seq49 Length=4798478 Score = 107 bits (118), Expect = 2e-18 Identities = 152/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || || | || || ||||| || || | ||| ||| ||| Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || ||| ||| ||| || || |||||| | ||| ||||| Sbjct 2846905 T-GACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2846963 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || |||||||| || || | | || ||||||| |||| Sbjct 2846964 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2847023 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || |||||||| || | ||| |||| Sbjct 2847024 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054 Score = 104 bits (114), Expect = 2e-17 Identities = 151/211 (72%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||| |||||||| || | || || ||||| || || | ||| ||| ||| Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || ||| ||| | | || ||| ||| ||| || ||||||||| | ||| ||||| Sbjct 2869973 T-GACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATC 2870031 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || |||||||| || || | | || |||| || || | Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || || ||||| || | ||| |||| Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122 Score = 98.7 bits (108), Expect = 8e-16 Identities = 150/211 (71%), Gaps = 2/211 (1%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613 ||||||||||||||| || || | || || ||||| || || | ||| ||| ||| Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916 Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673 || || ||| | | || ||| || ||| || || |||||| | ||| ||||| Sbjct 2840917 T-GACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2840975 Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733 ||||||| ||||||| ||| || |||||||| || || | | || ||||||| |||| Sbjct 2840976 AGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2841035 Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764 |||| || || ||||| || | ||| |||| Sbjct 2841036 ACATCCAGAAAGAGTCCACTCTTCACTTGGT 2841066 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || ||||| || ||| | || ||||| |||||||| | || |||| | | Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 ||||| | | | | || || || || || |||||||| | ||| || ||| Sbjct 2869746 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACCAG 2869805 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||| | | |||| ||| || || || || ||||| | | ||| | |||||||||||| Sbjct 2869806 CAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACAAC 2869865 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || |||||||| || || | ||| |||| | | ||| |||| |||| Sbjct 2869866 ATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTTTGAGAGGAGGAA 2869914 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||| || |||||||| || | || || || ||||| || | || |||| | Sbjct 2870370 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGTTCA 2870429 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || ||| | | || || ||||| ||||| || ||| | || ||| ||| Sbjct 2870430 GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 2870489 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| || || | ||| || || || || ||||||| | || |||| ||||||||| Sbjct 2870490 CAGAGGCTGATCTTTGCCGGGAAGCAACTCGAGGACGGGAGGACTTTGGCTGACTACAAC 2870549 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||||| || ||||| || |||||| |||| Sbjct 2870550 ATTCAGAAAGAGTCGACTTTGCACTTGGT 2870578 Score = 82.4 bits (90), Expect = 6e-11 Identities = 139/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| |||||||| || ||| | || ||||| || || || | ||| ||| ||| | Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || | | | || ||| ||||| || || |||||| | ||| || || Sbjct 2841146 -GACACGATTGATAATGTCAAAGCGAAGATACAGGACAAGGAAGGCATTCCCCCAGACCA 2841204 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | |||| ||| || |||||||| ||||| | | ||| |||| || ||||| Sbjct 2841205 GCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTACAA 2841264 Query 107735 CATTCAAAAGGAGTCTACG 107753 |||||||||||||| ||| Sbjct 2841265 TATTCAAAAGGAGTCGACG 2841283 >seq203 Length=8626763 Score = 96.9 bits (106), Expect = 3e-15 Identities = 153/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609 ||| | |||||||| ||||| ||||| | || ||||| || || ||| | || ||| Sbjct 5729924 TTTCAGATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAA 5729983 Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668 ||| ||| || ||| | |||||| ||| ||| || || ||||| | || Sbjct 5729984 AGCTC-CGACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCC 5730042 Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728 ||| |||||||| ||||| | ||| || || ||||| || || | | ||| |||| || Sbjct 5730043 GGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGA 5730102 Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765 || |||||||| ||||||||||| | ||| ||||| Sbjct 5730103 TTATAACATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139 >seq652 Length=2384379 Score = 93.3 bits (102), Expect = 3e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614 ||||| || |||||||| || | || || || ||||| || | ||| ||| ||| | Sbjct 465286 ATGCAGATATTTGTCAAGACCCTTACCGGGAAGACCATAACTTTGGAAGTCGAGAGCTCG 465345 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| || | | || ||| ||||| || || |||||| | ||| ||||| Sbjct 465346 -GATACCGTTGATAATGTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATCA 465404 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| | |||| ||| || || ||||| ||||| | | ||| ||||||| ||||| Sbjct 465405 GCAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAGGATGGCCGGACACTGGCGGATTACAA 465464 Query 107735 CATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || Sbjct 465465 CATCCAAAAGGAGTCAAC 465482 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| ||||||||||| ||| | || || || ||||| || | || |||| | Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 || || ||| | | || || |||||| || || || ||| | || || || Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 465632 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||||| || |||| ||| || || || ||||| |||| | ||| |||| || || || Sbjct 465633 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATAA 465692 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764 ||| || || ||||| || ||||| |||| Sbjct 465693 CATCCAGAAAGAGTCAACTCTGCACTTGGT 465722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398699964951064