Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001
662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters
Query= NC_023177.1
Length=124688
Score E
Sequences producing significant alignments: (Bits) Value
seq49 107 2e-18
seq203 96.9 3e-15
seq652 93.3 3e-14
>seq49
Length=4798478
Score = 107 bits (118), Expect = 2e-18
Identities = 152/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||||||||| || || | || || ||||| || || | ||| ||| |||
Sbjct 2846845 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2846904
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|| || ||| | | || ||| ||| ||| || || |||||| | ||| |||||
Sbjct 2846905 T-GACACCATCGACAACGTCAAAGCAAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2846963
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| ||||||| ||| || |||||||| || || | | || ||||||| ||||
Sbjct 2846964 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2847023
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|||| || |||||||| || | ||| ||||
Sbjct 2847024 ACATCCAGAAGGAGTCCACTCTTCACTTGGT 2847054
Score = 104 bits (114), Expect = 2e-17
Identities = 151/211 (72%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||| |||||||| || | || || ||||| || || | ||| ||| |||
Sbjct 2869913 AATGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2869972
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|| ||| ||| | | || ||| ||| ||| || ||||||||| | ||| |||||
Sbjct 2869973 T-GACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATC 2870031
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| ||||||| ||| || |||||||| || || | | || |||| || || |
Sbjct 2870032 AGCAGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATA 2870091
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|||| || || ||||| || | ||| ||||
Sbjct 2870092 ACATCCAGAAAGAGTCGACTCTTCACTTGGT 2870122
Score = 98.7 bits (108), Expect = 8e-16
Identities = 150/211 (71%), Gaps = 2/211 (1%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTG 107613
||||||||||||||| || || | || || ||||| || || | ||| ||| |||
Sbjct 2840857 AATGCAAATTTTTGTGAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTC 2840916
Query 107614 GCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATC 107673
|| || ||| | | || ||| || ||| || || |||||| | ||| |||||
Sbjct 2840917 T-GACACCATCGACAACGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCGGATC 2840975
Query 107674 AGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACA 107733
||||||| ||||||| ||| || |||||||| || || | | || ||||||| ||||
Sbjct 2840976 AGCAGAGGCTTATTTTTGCCGGGAAACAGCTAGAAGATGGTAGGACTTTGGCGGATTACA 2841035
Query 107734 ACATTCAAAAGGAGTCTACGTTGCACATGGT 107764
|||| || || ||||| || | ||| ||||
Sbjct 2841036 ACATCCAGAAAGAGTCCACTCTTCACTTGGT 2841066
Score = 84.2 bits (92), Expect = 2e-11
Identities = 156/229 (68%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || ||||| || ||| | || ||||| |||||||| | || |||| | |
Sbjct 2869686 ATGCAGATCTTTGTGAAGACTCTCACCGGCAAGACCATTACTCTTGAGGTGGAGAGTTCC 2869745
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
||||| | | | | || || || || || |||||||| | ||| || |||
Sbjct 2869746 GATACCATTGACAATGTGAAGGCCAAAATCCAGGACAAAGAAGGGATTCCCCCAGACCAG 2869805
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||| | | |||| ||| || || || || ||||| | | ||| | ||||||||||||
Sbjct 2869806 CAGCGGTTGATTTTTGCTGGAAAGCAACTCGAGGATGGCCGGACACTAGCGGACTACAAC 2869865
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784
|| |||||||| || || | ||| |||| | | ||| |||| ||||
Sbjct 2869866 ATCCAAAAGGAATCCACCCTTCACTTGGTCCTCCGTTTGAGAGGAGGAA 2869914
Score = 84.2 bits (92), Expect = 2e-11
Identities = 144/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615
||||| || |||||||| || | || || || ||||| || | || |||| |
Sbjct 2870370 ATGCAGATCTTTGTCAAGACCCTGACTGGAAAGACCATCACTTTGGAGGTGGAGAGTTCA 2870429
Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675
|| || ||| | | || || ||||| ||||| || ||| | || ||| |||
Sbjct 2870430 GACACCATCGACAACGTGAAGGCGAAGATCCAGGATAAGGAGGGCATCCCACCGGACCAG 2870489
Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735
||||| || || | ||| || || || || ||||||| | || |||| |||||||||
Sbjct 2870490 CAGAGGCTGATCTTTGCCGGGAAGCAACTCGAGGACGGGAGGACTTTGGCTGACTACAAC 2870549
Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||||| || ||||| || |||||| ||||
Sbjct 2870550 ATTCAGAAAGAGTCGACTTTGCACTTGGT 2870578
Score = 82.4 bits (90), Expect = 6e-11
Identities = 139/199 (70%), Gaps = 2/199 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| |||||||| || ||| | || ||||| || || || | ||| ||| ||| |
Sbjct 2841086 ATGCAGATTTTTGTGAAGACTCTGACTGGCAAGACTATCACTTTGGAAGTCGAGAGCTCG 2841145
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || | | | || ||| ||||| || || |||||| | ||| || ||
Sbjct 2841146 -GACACGATTGATAATGTCAAAGCGAAGATACAGGACAAGGAAGGCATTCCCCCAGACCA 2841204
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||| | | |||| ||| || |||||||| ||||| | | ||| |||| || |||||
Sbjct 2841205 GCAGCGGTTGATTTTTGCAGGGAAACAGCTCGAGGATGGCCGGACACTGGCCGATTACAA 2841264
Query 107735 CATTCAAAAGGAGTCTACG 107753
|||||||||||||| |||
Sbjct 2841265 TATTCAAAAGGAGTCGACG 2841283
>seq203
Length=8626763
Score = 96.9 bits (106), Expect = 3e-15
Identities = 153/217 (71%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 107550 TTTAAAATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG 107609
||| | |||||||| ||||| ||||| | || ||||| || || ||| | || |||
Sbjct 5729924 TTTCAGATGCAAATCTTTGTGAAAACCCTTACGGGCAAGACAATCACCCTTGAGGTGGAA 5729983
Query 107610 -GCTGGCGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGT 107668
||| ||| || ||| | |||||| ||| ||| || || ||||| | ||
Sbjct 5729984 AGCTC-CGACACAATCGATAATGTAAAAGCAAAAATTCAAGACAAGGAAGGGATCCCTCC 5730042
Query 107669 GGATCAGCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGA 107728
||| |||||||| ||||| | ||| || || ||||| || || | | ||| |||| ||
Sbjct 5730043 GGACCAGCAGAGGCTTATCTTTGCTGGCAAGCAGCTTGAAGATGGCCGAACCTTGGCCGA 5730102
Query 107729 CTACAACATTCAAAAGGAGTCTACGTTGCACATGGTG 107765
|| |||||||| ||||||||||| | ||| |||||
Sbjct 5730103 TTATAACATTCAGAAGGAGTCTACCCTCCACTTGGTG 5730139
>seq652
Length=2384379
Score = 93.3 bits (102), Expect = 3e-14
Identities = 141/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAG-GCTGG 107614
||||| || |||||||| || | || || || ||||| || | ||| ||| ||| |
Sbjct 465286 ATGCAGATATTTGTCAAGACCCTTACCGGGAAGACCATAACTTTGGAAGTCGAGAGCTCG 465345
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
||||| || | | || ||| ||||| || || |||||| | ||| |||||
Sbjct 465346 -GATACCGTTGATAATGTCAAAGCTAAGATACAGGACAAGGAAGGCATTCCCCCAGATCA 465404
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| | |||| ||| || || ||||| ||||| | | ||| ||||||| |||||
Sbjct 465405 GCAGAGGTTGATTTTTGCTGGGAAGCAGCTCGAGGATGGCCGGACACTGGCGGATTACAA 465464
Query 107735 CATTCAAAAGGAGTCTAC 107752
||| ||||||||||| ||
Sbjct 465465 CATCCAAAAGGAGTCAAC 465482
Score = 82.4 bits (90), Expect = 6e-11
Identities = 144/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614
|||||| ||||||||||| ||| | || || || ||||| || | || |||| |
Sbjct 465513 AATGCAGATTTTTGTCAAGACTCTGACCGGAAAGACCATCACTCTGGAGGTGGAGAGTTC 465572
Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674
|| || ||| | | || || |||||| || || || ||| | || || ||
Sbjct 465573 AGACACCATCGACAATGTGAAGGCAAAGATCCAGGACAAGGAGGGCATCCCTCCAGACCA 465632
Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734
|||||| || |||| ||| || || || ||||| |||| | ||| |||| || || ||
Sbjct 465633 GCAGAGGCTGATTTTTGCCGGGAAGCAACTGGAAGACGGAAGGACACTGGCCGATTATAA 465692
Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGT 107764
||| || || ||||| || ||||| ||||
Sbjct 465693 CATCCAGAAAGAGTCAACTCTGCACTTGGT 465722
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 398699964951064
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |