Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Metrosideros_20polymorpha_20var._20glaberrima_20[genbank_20GCA_5F001 662345.1_202016-04-28] 36,376 sequences; 304,365,553 total letters Query= NC_023426.1 Length=245717 Score E Sequences producing significant alignments: (Bits) Value seq49 102 1e-16 seq652 86.0 1e-11 >seq49 Length=4798478 Score = 102 bits (112), Expect = 1e-16 Identities = 158/226 (70%), Gaps = 0/226 (0%) Strand=Plus/Plus Query 146032 TGCAAATATTCATAAAAACATTAACAGGAAAAACAATTACTATTGATGTAGAACATAACG 146091 ||||||| || | || || | || || |||||||| ||| | || || || | Sbjct 2869915 TGCAAATCTTTGTCAAGACCCTTACTGGGAAAACAATCACTTTGGAAGTTGAGAGCTCTG 2869974 Query 146092 ATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAAC 146151 | ||||| | ||||| ||| ||||| || |||||||||||||| || ||||| | Sbjct 2869975 ACACTATCGACAATGTCAAAGCAAAAATTCAGGACAAAGAAGGCATTCCCCCGGATCAGC 2870034 Query 146152 AAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAATA 146211 | || || |||||||| || ||||| |||| ||| ||| || | |||||||||| | Sbjct 2870035 AGAGGCTTATTTTTGCTGGGAAACAGCTAGAAGATGGTAGGACTCTGGCAGATTATAACA 2870094 Query 146212 TACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 | || ||||| |||||| | || || || | || | || ||||| Sbjct 2870095 TCCAGAAAGAGTCGACTCTTCACTTGGTTCTGCGTCTGAGGGGAGG 2870140 >seq652 Length=2384379 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 146091 GATACTATTCAAAATGTAAAAAATAAAATACAACTTAAAGAAGGCATTCCACCCGATCAA 146150 || || ||| | ||||| ||| ||||| || || ||||||||||| || ||||| Sbjct 465118 GACACCATTGACAATGTCAAAGCGAAAATTCAGGACAAGGAAGGCATTCCCCCAGATCAG 465177 Query 146151 CAAAGACTCATTTTTGCAGGTAAACAATTAGATGATAATAGAACGTTAACAGATTATAAT 146210 ||||| || || ||||| || |||||| | || ||| ||| || || | |||||||| Sbjct 465178 CAAAGGCTTATCTTTGCCGGGAAACAACTTGAGGATGGTAGGACTTTGGCGGATTATAAC 465237 Query 146211 ATACAAAAAGAATCGACTATCCATTTAGTATTACGATTAAGAGGAGG 146257 || || || || || ||| | || || || | ||||| || || || Sbjct 465238 ATCCAGAAGGAGTCCACTCTTCACTTGGTGCTGCGATTGAGGGGGGG 465284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 785808930137920